Wall clock time and date at job start Tue Mar 31 2020 14:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 O 1.42900 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.42907 * 114.00024 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46942 * 180.02562 * 11 10 9 13 13 C 1.38830 * 120.75853 * 90.00287 * 12 11 10 14 14 C 1.38043 * 119.28789 * 179.97438 * 13 12 11 15 15 N 1.31964 * 120.83823 * 359.97438 * 14 13 12 16 16 C 1.32247 * 121.64819 * 0.02562 * 15 14 13 17 17 O 1.35674 * 119.68754 * 180.02562 * 16 15 14 18 18 C 1.38380 * 120.75625 * 269.71865 * 12 11 10 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.36941 * 120.00103 * 84.99785 * 19 2 1 21 21 H 1.08000 * 119.99734 * 0.02562 * 20 19 2 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 2 23 23 N 1.31613 * 120.00446 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47005 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47173 * 119.99511 * 24 22 20 27 27 H 1.48497 * 109.46943 * 239.99759 * 24 22 20 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.09007 * 109.46657 * 300.00230 * 11 10 9 39 39 H 1.08996 * 109.47170 * 59.99906 * 11 10 9 40 40 H 1.08000 * 120.35728 * 359.97438 * 13 12 11 41 41 H 1.08005 * 119.58187 * 179.97438 * 14 13 12 42 42 H 0.96700 * 113.99459 * 89.99870 * 17 16 15 43 43 H 1.08000 * 120.44559 * 0.02562 * 18 12 11 44 44 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 45 45 H 0.96996 * 120.00501 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 8 7.3005 -1.9487 4.0661 11 6 7.8813 -2.5927 5.2019 12 6 9.3783 -2.4239 5.1641 13 6 9.9852 -1.3324 5.7704 14 6 11.3590 -1.2081 5.7177 15 7 12.0968 -2.1116 5.1007 16 6 11.5556 -3.1647 4.5116 17 8 12.3521 -4.0695 3.8889 18 6 10.1798 -3.3563 4.5292 19 7 2.0183 -0.6905 -1.1963 20 6 2.1490 -0.0072 -2.3758 21 1 1.8925 1.0408 -2.4241 22 6 2.6112 -0.6616 -3.5094 23 7 2.9242 -1.9386 -3.4505 24 14 2.7902 0.2706 -5.1183 25 1 2.3762 1.6830 -4.9207 26 1 4.2070 0.2269 -5.5607 27 1 1.9290 -0.3571 -6.1525 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.4883 -2.1441 6.1144 39 1 7.6344 -3.6542 5.1835 40 1 9.3890 -0.5885 6.2779 41 1 11.8361 -0.3606 6.1875 42 1 12.6525 -4.7886 4.4613 43 1 9.7414 -4.2196 4.0508 44 1 2.2489 -1.6317 -1.1529 45 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690848453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:46 Heat of formation + Delta-G solvation = -108.972008 kcal Electronic energy + Delta-G solvation = -25774.718052 eV Core-core repulsion = 21791.765077 eV Total energy + Delta-G solvation = -3982.952974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.50452 -40.79841 -38.89562 -38.13591 -37.86027 -35.82786 -34.28857 -34.13253 -31.36894 -31.26998 -30.17670 -28.80862 -27.17001 -25.80871 -24.50444 -23.87953 -23.09800 -21.93884 -21.14067 -19.57332 -19.27634 -18.24292 -18.07243 -17.90382 -17.27426 -17.09919 -16.84242 -16.64460 -16.38936 -16.06577 -15.52546 -15.42960 -15.33921 -15.05045 -14.48217 -14.22209 -14.15467 -14.02753 -13.55568 -13.39475 -13.23325 -12.86951 -12.86197 -12.75406 -12.68286 -12.62336 -12.25763 -12.21056 -12.09639 -11.62929 -11.59236 -11.01881 -10.95036 -10.75463 -10.73799 -10.51380 -10.10101 -9.95188 -8.97621 -7.93629 -5.19831 -0.02663 0.03669 1.44415 1.46335 1.55028 1.60567 1.86610 2.52708 2.56274 2.68901 3.12929 3.41024 3.62530 3.70163 3.83190 3.93042 4.02812 4.04882 4.05337 4.20567 4.24736 4.25108 4.34876 4.40886 4.43845 4.57766 4.68233 4.73276 4.79296 4.84323 4.90215 5.04472 5.12373 5.23036 5.23746 5.41639 5.45317 5.54463 5.54803 5.63536 6.00557 6.30091 6.58954 6.61933 6.89605 7.30773 7.35932 8.14724 8.35102 9.30205 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.002028 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.029503 B =13803.760642 C =15156.107561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.133 3.867 6 N -0.708 5.708 7 C 0.497 3.503 8 O -0.587 6.587 9 C 0.053 3.947 10 O -0.398 6.398 11 C 0.098 3.902 12 C -0.042 4.042 13 C -0.159 4.159 14 C 0.112 3.888 15 N -0.532 5.532 16 C 0.289 3.711 17 O -0.496 6.496 18 C -0.174 4.174 19 N -0.735 5.735 20 C -0.230 4.230 21 H 0.074 0.926 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.300 1.300 27 H -0.293 1.293 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.031 0.969 35 H 0.421 0.579 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.169 0.831 41 H 0.190 0.810 42 H 0.419 0.581 43 H 0.151 0.849 44 H 0.372 0.628 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -3.994 30.244 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.362 5.362 7 C 0.284 3.716 8 O -0.466 6.466 9 C -0.026 4.026 10 O -0.317 6.317 11 C 0.022 3.978 12 C -0.050 4.050 13 C -0.179 4.179 14 C -0.044 4.044 15 N -0.253 5.253 16 C 0.111 3.889 17 O -0.307 6.307 18 C -0.195 4.195 19 N -0.376 5.376 20 C -0.362 4.362 21 H 0.092 0.908 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.795 3.205 25 H -0.190 1.190 26 H -0.228 1.228 27 H -0.220 1.220 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.259 0.741 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.186 0.814 41 H 0.207 0.793 42 H 0.280 0.720 43 H 0.169 0.831 44 H 0.204 0.796 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.257 -2.973 28.932 30.234 hybrid contribution -0.576 -0.767 -0.986 1.376 sum 7.681 -3.740 27.946 29.222 Atomic orbital electron populations 1.22255 0.96987 1.01098 1.00876 1.20495 0.93260 0.95200 0.85769 0.94104 1.21903 0.92143 1.02224 0.98908 1.21085 0.95505 0.96018 0.86522 1.45734 1.06943 1.56724 1.26834 1.21243 0.82482 0.80210 0.87696 1.90761 1.56856 1.47477 1.51550 1.22364 0.82151 1.02276 0.95782 1.88063 1.19515 1.77586 1.46540 1.21590 0.87474 0.99152 0.89539 1.20229 0.96017 0.93837 0.94952 1.22452 0.96334 0.98193 1.00900 1.23067 0.91085 0.96404 0.93864 1.67173 1.43675 1.04366 1.10042 1.19371 0.87705 0.89666 0.92136 1.84768 1.68650 1.38370 1.38864 1.22234 0.93326 1.02814 1.01170 1.42667 1.78366 1.10244 1.06332 1.19638 1.34106 0.94057 0.88445 0.90804 1.25486 1.03457 0.96896 1.01361 1.69802 1.53076 1.10166 1.29124 0.85182 0.76528 0.78378 0.80414 1.18988 1.22761 1.21975 0.93532 0.90436 0.95029 0.90725 0.87270 0.93334 0.95007 0.74087 0.85643 0.86758 0.88132 0.89434 0.81364 0.79347 0.72005 0.83124 0.79647 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.49 71.98 0.68 -4.15 16 2 C 0.16 5.88 2.89 44.99 0.13 6.01 16 3 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 4 C -0.11 -3.05 4.87 30.59 0.15 -2.90 16 5 C 0.13 4.30 5.56 86.38 0.48 4.78 16 6 N -0.71 -16.50 5.56 -463.06 -2.57 -19.07 16 7 C 0.50 13.93 7.91 87.66 0.69 14.63 16 8 O -0.59 -25.01 16.50 16.01 0.26 -24.74 16 9 C 0.05 0.82 6.42 71.24 0.46 1.28 16 10 O -0.40 -8.71 9.86 -129.94 -1.28 -9.99 16 11 C 0.10 1.18 6.11 71.23 0.44 1.61 16 12 C -0.04 -0.70 5.54 -19.69 -0.11 -0.81 16 13 C -0.16 -2.28 9.81 22.37 0.22 -2.06 16 14 C 0.11 1.84 11.17 84.63 0.95 2.79 16 15 N -0.53 -12.01 10.39 -308.95 -3.21 -15.22 16 16 C 0.29 6.29 7.74 84.79 0.66 6.95 16 17 O -0.50 -9.69 13.56 -89.91 -1.22 -10.90 16 18 C -0.17 -3.29 9.75 22.47 0.22 -3.07 16 19 N -0.74 -36.35 4.57 -322.95 -1.48 -37.83 16 20 C -0.23 -12.92 9.93 84.03 0.83 -12.09 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 23 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 24 Si 0.96 47.94 29.55 68.60 2.03 49.96 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 27 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.03 1.38 7.75 -2.39 -0.02 1.36 16 35 H 0.42 5.48 8.47 -92.71 -0.79 4.70 16 36 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.53 8.10 -2.38 -0.02 0.51 16 39 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 40 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.42 3.32 9.06 -74.06 -0.67 2.65 16 43 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.37 19.87 7.80 -92.71 -0.72 19.14 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -91.29 389.88 -2.08 -93.37 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -1.15 Total: 26.51 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.26 Total: 8.71 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -6.98 Total: -132.90 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.24 Total: -45.64 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Total: -91.29 -2.08 -93.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690848453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.605 kcal (2) G-P(sol) polarization free energy of solvation -91.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds