Wall clock time and date at job start Tue Mar 31 2020 14:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47155 * 2 1 4 4 C 1.52999 * 109.47140 * 239.99562 * 2 1 3 5 5 C 1.53008 * 109.47164 * 174.99882 * 4 2 1 6 6 N 1.46502 * 109.47144 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00230 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99435 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00299 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47435 * 180.02562 * 9 7 6 11 11 N 1.46493 * 109.47245 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99793 * 179.97438 * 11 10 9 13 13 O 1.21695 * 120.00192 * 359.97438 * 12 11 10 14 14 C 1.46661 * 119.99796 * 179.97438 * 12 11 10 15 15 C 1.36547 * 125.98711 * 179.97438 * 14 12 11 16 16 C 1.40360 * 106.70833 * 180.02562 * 15 14 12 17 17 C 1.35131 * 107.11647 * 359.97438 * 16 15 14 18 18 O 1.33934 * 108.76477 * 0.02562 * 17 16 15 19 19 N 1.46510 * 109.47250 * 119.99636 * 2 1 3 20 20 C 1.36933 * 120.00069 * 275.00063 * 19 2 1 21 21 H 1.08001 * 120.00039 * 359.97438 * 20 19 2 22 22 C 1.38812 * 120.00131 * 180.02562 * 20 19 2 23 23 N 1.31620 * 119.99931 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47137 * 59.99899 * 24 22 20 26 26 H 1.48495 * 109.46884 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46741 * 299.99730 * 24 22 20 28 28 H 1.08994 * 109.47299 * 60.00469 * 1 2 3 29 29 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46974 * 300.00015 * 1 2 3 31 31 H 1.08999 * 109.47116 * 55.00496 * 4 2 1 32 32 H 1.09001 * 109.47235 * 295.00096 * 4 2 1 33 33 H 1.08999 * 109.46602 * 60.00300 * 5 4 2 34 34 H 1.09001 * 109.47219 * 300.00224 * 5 4 2 35 35 H 0.97006 * 119.99440 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.47542 * 59.99831 * 9 7 6 37 37 H 1.09001 * 109.46974 * 300.00200 * 9 7 6 38 38 H 1.08997 * 109.47315 * 59.99176 * 10 9 7 39 39 H 1.09001 * 109.46782 * 299.99802 * 10 9 7 40 40 H 0.96998 * 120.00266 * 359.97438 * 11 10 9 41 41 H 1.08005 * 126.64485 * 0.02562 * 15 14 12 42 42 H 1.08003 * 126.44294 * 180.02562 * 16 15 14 43 43 H 1.07997 * 125.61851 * 180.26772 * 17 16 15 44 44 H 0.97001 * 119.99939 * 95.00145 * 19 2 1 45 45 H 0.96997 * 120.00413 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 7 4.0533 -1.3046 -2.5095 7 6 5.3740 -1.3400 -2.7752 8 8 6.1583 -0.8000 -2.0239 9 6 5.8764 -2.0506 -4.0055 10 6 7.4012 -1.9427 -4.0699 11 7 7.8894 -2.6329 -5.2663 12 6 9.2103 -2.6682 -5.5320 13 8 9.9973 -2.1264 -4.7783 14 6 9.6991 -3.3597 -6.7294 15 6 11.0042 -3.4703 -7.1155 16 6 11.0106 -4.2067 -8.3104 17 6 9.7254 -4.5101 -8.5974 18 8 8.9382 -3.9978 -7.6426 19 7 2.0184 -0.6906 1.1963 20 6 2.1491 -0.0074 2.3758 21 1 1.8927 1.0406 2.4241 22 6 2.6124 -0.6615 3.5091 23 7 2.9254 -1.9386 3.4501 24 14 2.7901 0.2703 5.1183 25 1 1.4674 0.8060 5.5288 26 1 3.2992 -0.6481 6.1684 27 1 3.7446 1.3934 4.9371 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 -2.1369 32 1 1.7516 -1.7716 -1.2055 33 1 3.9994 -1.0729 -0.4259 34 1 3.8532 0.4369 -1.3574 35 1 3.4258 -1.7361 -3.1104 36 1 5.4415 -1.5915 -4.8933 37 1 5.5883 -3.1009 -3.9615 38 1 7.8358 -2.4020 -3.1821 39 1 7.6896 -0.8924 -4.1137 40 1 7.2621 -3.0645 -5.8672 41 1 11.8649 -3.0688 -6.6011 42 1 11.8793 -4.4803 -8.8908 43 1 9.3888 -5.0760 -9.4534 44 1 2.2491 -1.6317 1.1528 45 1 3.2488 -2.3959 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690878273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:37 Heat of formation + Delta-G solvation = -85.964791 kcal Electronic energy + Delta-G solvation = -25661.860090 eV Core-core repulsion = 21679.904783 eV Total energy + Delta-G solvation = -3981.955307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.64088 -41.00446 -40.40325 -38.16523 -36.50671 -35.80446 -34.15111 -34.05471 -32.59702 -31.13476 -30.52900 -29.41810 -26.16962 -25.63390 -24.05106 -23.22040 -22.66550 -21.87549 -21.52081 -20.95438 -19.63424 -19.25776 -18.17549 -17.49215 -17.30313 -17.08578 -16.83833 -16.77407 -16.59994 -16.11081 -15.66348 -15.37809 -15.21078 -14.92024 -14.67547 -14.21357 -14.10766 -14.05067 -13.94377 -13.56665 -13.54570 -13.23591 -12.99747 -12.79518 -12.62717 -12.53916 -12.30599 -12.21586 -12.10738 -11.66581 -11.62455 -11.58662 -11.05967 -10.98147 -10.87959 -10.41878 -10.06837 -9.65546 -8.97127 -7.92776 -5.19097 -0.00107 1.42364 1.45189 1.48358 1.53649 1.54274 1.64098 1.98009 2.04437 2.45678 2.56976 3.41315 3.54136 3.76434 3.93594 3.93897 3.95853 4.03217 4.04496 4.13071 4.25438 4.39635 4.49944 4.60893 4.68485 4.79693 4.80013 4.83663 4.91063 4.92206 4.96113 5.04893 5.12739 5.15365 5.25485 5.38910 5.41801 5.48877 5.54329 5.63380 5.81003 6.30437 6.35902 6.60357 6.94160 7.31686 7.36442 8.15287 8.35993 9.30484 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.001772 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.906295 B =15799.107004 C =16710.664918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.131 3.869 6 N -0.710 5.710 7 C 0.504 3.496 8 O -0.595 6.595 9 C -0.133 4.133 10 C 0.136 3.864 11 N -0.701 5.701 12 C 0.597 3.403 13 O -0.566 6.566 14 C -0.108 4.108 15 C -0.129 4.129 16 C -0.237 4.237 17 C 0.016 3.984 18 O -0.166 6.166 19 N -0.735 5.735 20 C -0.234 4.234 21 H 0.073 0.927 22 C -0.079 4.079 23 N -0.969 5.969 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.298 1.298 27 H -0.283 1.283 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.420 0.580 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.423 0.577 41 H 0.153 0.847 42 H 0.182 0.818 43 H 0.259 0.741 44 H 0.372 0.628 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 -7.062 -33.211 34.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.006 3.994 6 N -0.362 5.362 7 C 0.291 3.709 8 O -0.476 6.476 9 C -0.172 4.172 10 C 0.012 3.988 11 N -0.353 5.353 12 C 0.385 3.615 13 O -0.447 6.447 14 C -0.160 4.160 15 C -0.150 4.150 16 C -0.256 4.256 17 C -0.053 4.053 18 O -0.061 6.061 19 N -0.375 5.375 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.271 4.271 23 N -0.620 5.620 24 Si 0.796 3.204 25 H -0.202 1.202 26 H -0.224 1.224 27 H -0.210 1.210 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.258 0.742 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.261 0.739 41 H 0.171 0.829 42 H 0.199 0.801 43 H 0.274 0.726 44 H 0.204 0.796 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.835 -6.143 -31.975 33.270 hybrid contribution 0.202 -0.171 1.210 1.239 sum 7.038 -6.314 -30.765 32.185 Atomic orbital electron populations 1.22255 0.97087 1.01067 1.00822 1.20490 0.93201 0.95195 0.85827 0.94144 1.21901 0.92389 1.02132 0.98802 1.21088 0.95405 0.96079 0.86792 1.45849 1.07385 1.56369 1.26639 1.21134 0.82355 0.79868 0.87495 1.90778 1.56711 1.48173 1.51945 1.21730 0.94039 1.04569 0.96879 1.20924 0.93919 0.97243 0.86733 1.45634 1.06726 1.56058 1.26876 1.16832 0.82838 0.78983 0.82847 1.90901 1.56837 1.47702 1.49280 1.21657 0.91178 1.08118 0.95060 1.22277 0.96098 0.99210 0.97379 1.22225 0.99842 1.04922 0.98587 1.25425 0.89075 0.97818 0.92978 1.84042 1.37749 1.54685 1.29640 1.42636 1.78395 1.10223 1.06281 1.19571 1.34447 0.94087 0.88553 0.90875 1.25487 1.03350 0.96899 1.01346 1.69792 1.52881 1.10113 1.29257 0.85312 0.77924 0.77297 0.79884 1.20179 1.22418 1.20979 0.90498 0.93555 0.95067 0.87450 0.90804 0.94890 0.93335 0.74164 0.83926 0.84677 0.92888 0.92256 0.73915 0.82897 0.80095 0.72569 0.79632 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.49 71.98 0.68 -4.20 16 2 C 0.16 5.91 2.89 44.99 0.13 6.04 16 3 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 4 C -0.11 -3.07 4.87 30.60 0.15 -2.92 16 5 C 0.13 4.18 5.56 86.38 0.48 4.66 16 6 N -0.71 -16.06 5.56 -463.05 -2.57 -18.63 16 7 C 0.50 13.15 7.83 87.66 0.69 13.83 16 8 O -0.60 -23.41 15.98 -3.05 -0.05 -23.45 16 9 C -0.13 -1.83 5.81 29.85 0.17 -1.66 16 10 C 0.14 2.92 4.96 86.38 0.43 3.35 16 11 N -0.70 -11.95 5.55 -467.11 -2.59 -14.54 16 12 C 0.60 14.09 7.79 86.44 0.67 14.76 16 13 O -0.57 -18.68 16.86 -4.33 -0.07 -18.75 16 14 C -0.11 -2.00 7.13 24.08 0.17 -1.83 16 15 C -0.13 -2.16 10.62 22.39 0.24 -1.92 16 16 C -0.24 -2.22 10.87 22.07 0.24 -1.98 16 17 C 0.02 0.10 12.08 67.10 0.81 0.91 16 18 O -0.17 -2.03 10.40 -5.01 -0.05 -2.08 16 19 N -0.73 -36.31 4.57 -322.94 -1.48 -37.79 16 20 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 21 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 23 N -0.97 -60.77 13.06 21.65 0.28 -60.48 16 24 Si 0.97 47.81 29.55 68.60 2.03 49.84 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 27 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.41 7.75 -2.39 -0.02 1.39 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.42 5.44 8.47 -92.70 -0.79 4.65 16 36 H 0.14 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.42 3.91 8.23 -92.71 -0.76 3.14 16 41 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.26 -1.11 8.06 -2.91 -0.02 -1.13 16 44 H 0.37 19.84 7.80 -92.71 -0.72 19.12 16 45 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -88.02 390.17 0.41 -87.61 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -1.25 Total: 25.74 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.16 Total: 12.54 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -6.36 Total: -131.44 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.17 Total: -44.29 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -88.02 0.41 -87.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690878273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.644 kcal (2) G-P(sol) polarization free energy of solvation -88.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds