Wall clock time and date at job start Tue Mar 31 2020 14:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46933 * 2 1 4 4 C 1.53006 * 109.46836 * 119.99948 * 2 1 3 5 5 C 1.53002 * 109.46886 * 185.00211 * 4 2 1 6 6 N 1.46496 * 109.46704 * 179.97438 * 5 4 2 7 7 C 1.34779 * 119.99914 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99695 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00395 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47242 * 179.97438 * 9 7 6 11 11 N 1.46506 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00072 * 180.02562 * 11 10 9 13 13 O 1.21695 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.46656 * 119.99664 * 179.97438 * 12 11 10 15 15 C 1.36547 * 125.98712 * 179.71513 * 14 12 11 16 16 C 1.40360 * 106.70786 * 179.91428 * 15 14 12 17 17 C 1.35127 * 107.11856 * 0.34971 * 16 15 14 18 18 O 1.33936 * 108.76478 * 359.78384 * 17 16 15 19 19 N 1.46495 * 109.47039 * 239.99360 * 2 1 3 20 20 C 1.36941 * 119.99846 * 85.00442 * 19 2 1 21 21 H 1.08003 * 119.99952 * 359.97438 * 20 19 2 22 22 C 1.38806 * 120.00344 * 179.97438 * 20 19 2 23 23 N 1.31615 * 120.00182 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99941 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47460 * 89.99898 * 24 22 20 26 26 H 1.48504 * 109.47245 * 210.00154 * 24 22 20 27 27 H 1.48506 * 109.47079 * 329.99808 * 24 22 20 28 28 H 1.09000 * 109.47335 * 300.00128 * 1 2 3 29 29 H 1.09002 * 109.47028 * 60.00286 * 1 2 3 30 30 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47372 * 64.99617 * 4 2 1 32 32 H 1.09001 * 109.46611 * 304.99908 * 4 2 1 33 33 H 1.09001 * 109.47142 * 59.99820 * 5 4 2 34 34 H 1.08996 * 109.46698 * 299.99766 * 5 4 2 35 35 H 0.96994 * 120.00700 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.46948 * 60.00339 * 9 7 6 37 37 H 1.08996 * 109.47390 * 299.99981 * 9 7 6 38 38 H 1.09001 * 109.47289 * 60.00043 * 10 9 7 39 39 H 1.09004 * 109.47261 * 300.00299 * 10 9 7 40 40 H 0.97001 * 119.99251 * 0.02562 * 11 10 9 41 41 H 1.08001 * 126.64429 * 0.03573 * 15 14 12 42 42 H 1.08005 * 126.44123 * 180.15674 * 16 15 14 43 43 H 1.07996 * 125.62326 * 179.78059 * 17 16 15 44 44 H 0.96998 * 120.00747 * 264.99885 * 19 2 1 45 45 H 0.97004 * 120.00169 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3739 -1.3395 2.7756 8 8 6.1584 -0.8011 2.0235 9 6 5.8761 -2.0488 4.0067 10 6 7.4011 -1.9420 4.0704 11 7 7.8894 -2.6322 5.2670 12 6 9.2103 -2.6683 5.5321 13 8 9.9974 -2.1282 4.7775 14 6 9.6990 -3.3587 6.7302 15 6 11.0046 -3.4751 7.1128 16 6 11.0104 -4.2067 8.3106 17 6 9.7251 -4.5079 8.5990 18 8 8.9378 -3.9952 7.6444 19 7 2.0183 -0.6907 -1.1961 20 6 2.1492 -0.0077 -2.3757 21 1 1.8920 1.0402 -2.4244 22 6 2.6124 -0.6619 -3.5089 23 7 2.7376 -0.0055 -4.6428 24 14 3.0565 -2.4743 -3.4250 25 1 1.8595 -3.2927 -3.7450 26 1 4.1324 -2.7663 -4.4061 27 1 3.5310 -2.8049 -2.0572 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4370 1.3574 34 1 3.9994 -1.0728 0.4261 35 1 3.4257 -1.7343 3.1116 36 1 5.5873 -3.0990 3.9641 37 1 5.4419 -1.5882 4.8940 38 1 7.6903 -0.8920 4.1128 39 1 7.8350 -2.4029 3.1831 40 1 7.2619 -3.0630 5.8683 41 1 11.8657 -3.0791 6.5951 42 1 11.8792 -4.4804 8.8909 43 1 9.3880 -5.0694 9.4577 44 1 2.2491 -1.6318 -1.1525 45 1 3.0617 -0.4626 -5.4347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690878275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:40 Heat of formation + Delta-G solvation = -83.538373 kcal Electronic energy + Delta-G solvation = -25759.183075 eV Core-core repulsion = 21777.332986 eV Total energy + Delta-G solvation = -3981.850089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.64805 -41.02348 -40.42024 -38.31141 -36.52471 -35.85759 -34.20851 -34.06551 -32.64441 -31.59409 -30.68204 -29.50871 -26.13831 -25.41236 -24.01636 -23.22342 -22.67433 -21.91116 -21.57745 -21.09656 -19.74968 -19.54108 -18.18521 -17.50354 -17.31346 -17.14807 -16.87260 -16.79229 -16.64910 -16.08802 -15.81688 -15.35390 -15.22418 -14.82005 -14.72904 -14.44302 -14.13761 -14.09664 -13.95336 -13.70572 -13.57697 -13.55169 -13.00807 -12.90805 -12.62172 -12.53700 -12.27829 -12.21103 -12.05060 -11.78467 -11.66586 -11.59748 -11.06833 -11.03230 -10.91471 -10.42944 -10.09660 -9.66364 -9.29188 -8.01678 -5.33253 -0.01018 1.34110 1.39081 1.41523 1.45302 1.53193 1.62081 1.96503 2.03519 2.43601 2.47869 3.30546 3.53021 3.63852 3.75540 3.92333 3.94594 3.99872 4.02475 4.12351 4.19662 4.30924 4.48711 4.60094 4.65788 4.77746 4.78698 4.82749 4.85881 4.91384 4.95377 5.02573 5.09340 5.14306 5.19931 5.37879 5.38013 5.46144 5.60131 5.80062 5.80390 6.23026 6.34928 6.58486 6.93289 7.10462 7.29943 7.87961 8.05012 9.20304 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.001876 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.654282 B =14923.967140 C =15660.446372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.040 0.960 4 C -0.117 4.117 5 C 0.125 3.875 6 N -0.710 5.710 7 C 0.504 3.496 8 O -0.595 6.595 9 C -0.133 4.133 10 C 0.135 3.865 11 N -0.701 5.701 12 C 0.597 3.403 13 O -0.566 6.566 14 C -0.108 4.108 15 C -0.129 4.129 16 C -0.237 4.237 17 C 0.017 3.983 18 O -0.165 6.165 19 N -0.750 5.750 20 C -0.222 4.222 21 H 0.056 0.944 22 C -0.069 4.069 23 N -0.987 5.987 24 Si 0.953 3.047 25 H -0.274 1.274 26 H -0.303 1.303 27 H -0.255 1.255 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.422 0.578 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.423 0.577 41 H 0.153 0.847 42 H 0.181 0.819 43 H 0.259 0.741 44 H 0.364 0.636 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.626 -13.531 37.259 40.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 H 0.058 0.942 4 C -0.155 4.155 5 C 0.000 4.000 6 N -0.363 5.363 7 C 0.291 3.709 8 O -0.475 6.475 9 C -0.172 4.172 10 C 0.011 3.989 11 N -0.353 5.353 12 C 0.385 3.615 13 O -0.447 6.447 14 C -0.160 4.160 15 C -0.150 4.150 16 C -0.256 4.256 17 C -0.053 4.053 18 O -0.061 6.061 19 N -0.395 5.395 20 C -0.353 4.353 21 H 0.074 0.926 22 C -0.260 4.260 23 N -0.638 5.638 24 Si 0.781 3.219 25 H -0.200 1.200 26 H -0.230 1.230 27 H -0.180 1.180 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.260 0.740 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.261 0.739 41 H 0.171 0.829 42 H 0.199 0.801 43 H 0.274 0.726 44 H 0.197 0.803 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.337 -12.585 36.020 38.854 hybrid contribution 0.327 -0.838 -0.756 1.176 sum 7.664 -13.423 35.263 38.502 Atomic orbital electron populations 1.22243 0.96618 1.01624 1.00897 1.20461 0.93391 0.95280 0.85105 0.94226 1.21951 0.92302 1.02573 0.98666 1.21157 0.95503 0.96367 0.86933 1.45837 1.07356 1.56455 1.26630 1.21134 0.82394 0.79837 0.87496 1.90787 1.56732 1.48105 1.51903 1.21735 0.93951 1.04660 0.96894 1.20938 0.94004 0.97228 0.86732 1.45634 1.06686 1.56086 1.26899 1.16825 0.82866 0.78964 0.82834 1.90903 1.56850 1.47732 1.49243 1.21658 0.91141 1.08163 0.95055 1.22278 0.96121 0.99205 0.97399 1.22225 0.99857 1.05016 0.98515 1.25422 0.89065 0.97800 0.92978 1.84042 1.37720 1.54682 1.29633 1.42842 1.79927 1.09553 1.07132 1.19039 1.34444 0.94400 0.87435 0.92640 1.25487 1.02747 1.02445 0.95361 1.69885 1.55083 1.37636 1.01173 0.85430 0.77569 0.81140 0.77735 1.20016 1.23040 1.17970 0.90320 0.95460 0.92579 0.89833 0.87112 0.93339 0.94535 0.74014 0.84512 0.83985 0.92352 0.92816 0.73900 0.82926 0.80132 0.72562 0.80288 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.49 71.98 0.68 -3.95 16 2 C 0.17 5.68 2.89 45.00 0.13 5.81 16 3 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 4 C -0.12 -2.73 4.87 30.60 0.15 -2.58 16 5 C 0.12 3.59 5.56 86.38 0.48 4.07 16 6 N -0.71 -13.94 5.56 -463.07 -2.57 -16.52 16 7 C 0.50 11.91 7.83 87.66 0.69 12.60 16 8 O -0.59 -22.01 15.98 -3.04 -0.05 -22.06 16 9 C -0.13 -1.57 5.81 29.85 0.17 -1.39 16 10 C 0.14 2.69 4.96 86.38 0.43 3.12 16 11 N -0.70 -11.05 5.55 -467.09 -2.59 -13.64 16 12 C 0.60 13.48 7.79 86.44 0.67 14.16 16 13 O -0.57 -18.16 16.87 -4.33 -0.07 -18.23 16 14 C -0.11 -1.91 7.13 24.07 0.17 -1.74 16 15 C -0.13 -2.08 10.62 22.39 0.24 -1.84 16 16 C -0.24 -2.07 10.87 22.07 0.24 -1.83 16 17 C 0.02 0.09 12.08 67.10 0.81 0.90 16 18 O -0.17 -1.88 10.40 -5.08 -0.05 -1.93 16 19 N -0.75 -33.99 4.38 -322.94 -1.41 -35.40 16 20 C -0.22 -12.76 10.41 84.03 0.87 -11.89 16 21 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 23 N -0.99 -65.19 13.97 21.65 0.30 -64.89 16 24 Si 0.95 47.08 27.74 68.60 1.90 48.99 16 25 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 27 H -0.25 -11.45 6.52 99.48 0.65 -10.80 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.38 7.75 -2.39 -0.02 1.36 16 35 H 0.42 4.12 8.47 -92.71 -0.79 3.33 16 36 H 0.14 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.05 1.40 8.10 -2.38 -0.02 1.38 16 40 H 0.42 3.35 8.23 -92.71 -0.76 2.58 16 41 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 43 H 0.26 -1.29 8.06 -2.91 -0.02 -1.32 16 44 H 0.36 15.88 5.66 -92.71 -0.52 15.36 16 45 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -92.20 387.05 0.55 -91.65 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -1.11 Total: 20.34 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.21 Total: 11.69 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -6.28 Total: -130.44 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.17 Total: -42.22 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.90 Total: 48.99 kcal Total: -92.20 0.55 -91.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690878275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.111 kcal (2) G-P(sol) polarization free energy of solvation -92.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds