Wall clock time and date at job start Tue Mar 31 2020 14:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47612 * 2 1 4 4 C 1.42897 * 114.00400 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.30337 * 27.82031 * 4 3 2 6 6 C 1.54391 * 110.43023 * 265.59312 * 4 3 2 7 7 N 1.48150 * 104.61300 * 264.94649 * 6 4 3 8 8 C 1.34776 * 127.83335 * 140.41116 * 7 6 4 9 9 O 1.21683 * 119.99866 * 179.97438 * 8 7 6 10 10 C 1.46723 * 120.00579 * 359.97289 * 8 7 6 11 11 O 1.35346 * 126.63939 * 359.69372 * 10 8 7 12 12 C 1.33662 * 107.68620 * 179.83791 * 11 10 8 13 13 N 1.30614 * 109.15011 * 0.42856 * 12 11 10 14 14 C 1.33690 * 108.99994 * 359.73520 * 13 12 11 15 15 C 1.50704 * 126.27803 * 179.97438 * 14 13 12 16 16 C 1.48415 * 104.33809 * 320.38760 * 7 6 4 17 17 C 1.54281 * 110.34535 * 150.00032 * 4 3 2 18 18 H 1.09002 * 110.34289 * 0.10428 * 17 4 3 19 19 C 1.52997 * 110.34394 * 237.95172 * 17 4 3 20 20 N 1.46502 * 109.47500 * 176.47423 * 19 17 4 21 21 C 1.36935 * 120.00199 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00030 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99696 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99812 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00295 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46775 * 90.00327 * 25 23 21 27 27 H 1.48500 * 109.47612 * 210.00231 * 25 23 21 28 28 H 1.48500 * 109.47473 * 330.00671 * 25 23 21 29 29 H 1.08995 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46742 * 300.00049 * 1 2 3 31 31 H 1.09003 * 109.46919 * 59.99464 * 1 2 3 32 32 H 1.09002 * 109.47146 * 239.99623 * 2 1 3 33 33 H 1.09002 * 109.47215 * 120.00083 * 2 1 3 34 34 H 1.08999 * 110.40947 * 23.73411 * 6 4 3 35 35 H 1.09001 * 110.40962 * 146.04809 * 6 4 3 36 36 H 1.08004 * 125.42969 * 180.16138 * 12 11 10 37 37 H 1.08994 * 109.46816 * 270.03661 * 15 14 13 38 38 H 1.08996 * 109.46848 * 30.03670 * 15 14 13 39 39 H 1.09004 * 109.47140 * 150.03726 * 15 14 13 40 40 H 1.08997 * 110.44874 * 280.87091 * 16 7 6 41 41 H 1.09004 * 110.48780 * 158.35620 * 16 7 6 42 42 H 1.09004 * 109.47061 * 296.47873 * 19 17 4 43 43 H 1.09006 * 109.47167 * 56.47442 * 19 17 4 44 44 H 0.97001 * 119.99550 * 359.97438 * 20 19 17 45 45 H 0.97007 * 120.00050 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8792 0.5887 -0.4780 6 6 3.9600 1.6132 1.4417 7 7 4.0939 3.0756 1.6374 8 6 3.8025 3.7920 2.7412 9 8 3.9689 4.9974 2.7456 10 6 3.2846 3.1187 3.9375 11 8 3.0438 1.7943 4.0784 12 6 2.5832 1.5948 5.3172 13 7 2.5218 2.7407 5.9411 14 6 2.9472 3.7065 5.1205 15 6 3.0368 5.1758 5.4434 16 6 4.6222 3.5729 0.3427 17 6 3.8665 2.7514 -0.7238 18 1 2.9937 3.3006 -1.0771 19 6 4.7938 2.4185 -1.8943 20 7 5.1278 3.6479 -2.6177 21 6 5.9503 3.5968 -3.7114 22 1 6.3525 2.6502 -4.0409 23 6 6.2672 4.7618 -4.3964 24 7 7.0573 4.7127 -5.4479 25 14 5.5711 6.3990 -3.8269 26 1 6.4997 7.0176 -2.8470 27 1 5.4105 7.3019 -4.9948 28 1 4.2497 6.1790 -3.1859 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2472 1.1980 2.1542 35 1 4.9285 1.1239 1.5453 36 1 2.3022 0.6391 5.7344 37 1 2.0979 5.6633 5.1812 38 1 3.2268 5.3025 6.5092 39 1 3.8506 5.6241 4.8734 40 1 5.6945 3.3904 0.2737 41 1 4.4082 4.6353 0.2261 42 1 5.7073 1.9603 -1.5152 43 1 4.2924 1.7247 -2.5692 44 1 4.7658 4.4979 -2.3224 45 1 7.2785 5.5267 -5.9269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691744064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:01 Heat of formation + Delta-G solvation = -32.146294 kcal Electronic energy + Delta-G solvation = -28106.041266 eV Core-core repulsion = 24126.419704 eV Total energy + Delta-G solvation = -3979.621562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.74075 -40.23780 -38.62967 -36.76796 -35.66487 -34.81684 -32.44276 -31.81749 -31.45186 -30.18100 -28.51309 -28.21541 -25.90829 -24.27453 -23.38828 -22.86863 -21.92293 -21.71612 -20.30470 -20.07952 -17.99991 -17.43177 -17.35172 -17.12696 -16.76991 -16.17549 -15.79248 -15.24501 -15.02686 -14.67071 -14.41188 -14.19352 -13.95054 -13.58481 -13.44307 -13.30907 -13.09671 -12.81519 -12.58041 -12.51647 -12.44788 -12.08143 -11.97756 -11.74872 -11.41570 -11.39352 -11.24061 -11.12258 -10.89646 -10.82480 -10.60924 -10.26847 -10.13515 -9.80563 -9.61319 -9.29754 -8.94660 -8.78103 -7.29107 -5.79802 -3.16634 0.55550 2.11111 2.13804 2.78358 2.89181 3.38760 3.42164 3.44996 3.47338 3.70630 4.19814 4.38876 4.44221 4.57790 4.61773 4.83344 4.88961 4.98736 5.07279 5.13534 5.17390 5.18086 5.23964 5.39732 5.44589 5.47999 5.50754 5.56970 5.58352 5.61442 5.67862 5.70800 5.73629 5.91256 5.96188 6.00367 6.05430 6.12735 6.49345 6.56740 7.12500 7.14820 7.31181 7.81333 7.94055 8.38559 9.16577 9.89090 10.07632 11.38232 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.003707 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.317818 B = 7552.466882 C = 9159.129369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.084 3.916 5 H 0.088 0.912 6 C 0.076 3.924 7 N -0.608 5.608 8 C 0.626 3.374 9 O -0.514 6.514 10 C -0.103 4.103 11 O -0.188 6.188 12 C 0.195 3.805 13 N -0.493 5.493 14 C 0.077 3.923 15 C -0.082 4.082 16 C 0.115 3.885 17 C -0.111 4.111 18 H 0.097 0.903 19 C 0.169 3.831 20 N -0.755 5.755 21 C -0.248 4.248 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.255 0.745 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 -11.491 21.498 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.292 6.292 4 C 0.024 3.976 5 H 0.105 0.895 6 C -0.047 4.047 7 N -0.340 5.340 8 C 0.414 3.586 9 O -0.391 6.391 10 C -0.158 4.158 11 O -0.074 6.074 12 C -0.030 4.030 13 N -0.222 5.222 14 C -0.047 4.047 15 C -0.139 4.139 16 C -0.006 4.006 17 C -0.131 4.131 18 H 0.115 0.885 19 C 0.042 3.958 20 N -0.401 5.401 21 C -0.377 4.377 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.202 1.202 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.271 0.729 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.587 -10.688 21.956 27.029 hybrid contribution -0.180 0.514 -0.288 0.616 sum -11.767 -10.174 21.667 26.673 Atomic orbital electron populations 1.21732 0.93852 1.02075 1.03152 1.22541 0.95610 0.84034 1.00071 1.88016 1.20259 1.26227 1.94717 1.23021 0.81667 0.99115 0.93770 0.89454 1.23140 1.02021 0.81230 0.98315 1.48809 1.63321 1.08906 1.12980 1.15843 0.77855 0.85305 0.79588 1.90883 1.54690 1.12143 1.81417 1.22889 1.12815 0.80874 0.99213 1.84576 1.63081 1.26121 1.33642 1.28332 0.95638 1.00057 0.79001 1.70347 1.19970 0.98754 1.33127 1.22057 0.96410 0.97863 0.88344 1.20406 1.04455 0.86086 1.02962 1.22630 0.98557 1.00246 0.79183 1.22521 1.00012 0.94944 0.95587 0.88490 1.20663 0.94710 0.90310 0.90137 1.42691 1.59296 1.03760 1.34319 1.19011 1.20397 0.95733 1.02600 0.89145 1.24661 0.99421 0.97383 0.97398 1.69701 1.39833 1.27613 1.20869 0.86589 0.79082 0.85167 0.77977 1.20847 1.21632 1.20221 0.91196 0.92140 0.91681 0.92945 0.93593 0.88883 0.89661 0.72942 0.89939 0.90455 0.88554 0.89326 0.89214 0.94989 0.94891 0.80498 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.50 6.50 37.16 0.24 0.74 16 3 O -0.37 -4.71 9.95 -35.23 -0.35 -5.06 16 4 C 0.08 0.99 3.19 -25.33 -0.08 0.91 16 5 H 0.09 0.89 7.38 -51.93 -0.38 0.51 16 6 C 0.08 0.84 6.46 -2.41 -0.02 0.82 16 7 N -0.61 -8.44 3.32 -170.60 -0.57 -9.01 16 8 C 0.63 9.36 7.89 -12.83 -0.10 9.26 16 9 O -0.51 -8.88 15.07 5.20 0.08 -8.80 16 10 C -0.10 -1.32 7.01 -36.84 -0.26 -1.58 16 11 O -0.19 -1.91 8.01 4.42 0.04 -1.88 16 12 C 0.19 1.53 13.21 52.24 0.69 2.22 16 13 N -0.49 -5.41 11.26 -10.88 -0.12 -5.53 16 14 C 0.08 0.94 7.16 -82.47 -0.59 0.35 16 15 C -0.08 -0.88 9.87 36.01 0.36 -0.52 16 16 C 0.12 1.73 6.35 -2.26 -0.01 1.72 16 17 C -0.11 -1.65 2.92 -89.22 -0.26 -1.91 16 18 H 0.10 1.60 7.98 -51.93 -0.41 1.18 16 19 C 0.17 3.01 5.37 -4.04 -0.02 2.99 16 20 N -0.75 -17.33 5.26 -59.91 -0.32 -17.64 16 21 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -29.10 13.97 55.49 0.78 -28.33 16 25 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.96 5.51 -51.93 -0.29 0.67 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.25 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.14 6.47 -51.93 -0.34 0.80 16 40 H 0.09 1.32 7.78 -51.93 -0.40 0.92 16 41 H 0.09 1.48 7.89 -51.93 -0.41 1.07 16 42 H 0.03 0.55 8.02 -51.93 -0.42 0.14 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.36 8.25 5.42 -40.82 -0.22 8.03 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -35.09 371.60 -6.20 -41.28 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.69 Total: 4.68 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.07 Total: 7.23 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.23 Total: -60.51 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.24 Total: -15.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.09 -6.20 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691744064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.136 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds