Wall clock time and date at job start Tue Mar 31 2020 14:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47102 * 2 1 4 4 C 1.42904 * 114.00086 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.28930 * 30.68220 * 4 3 2 6 6 C 1.54005 * 110.32380 * 268.54702 * 4 3 2 7 7 N 1.47485 * 107.24392 * 242.31459 * 6 4 3 8 8 C 1.34786 * 127.03052 * 154.61643 * 7 6 4 9 9 O 1.21488 * 119.99670 * 180.02562 * 8 7 6 10 10 C 1.48325 * 119.99814 * 0.02562 * 8 7 6 11 11 C 1.42283 * 126.93681 * 180.02562 * 10 8 7 12 12 C 1.35311 * 103.92097 * 180.02562 * 11 10 8 13 13 C 1.50700 * 126.66456 * 179.97438 * 12 11 10 14 14 O 1.34017 * 106.67269 * 359.97438 * 12 11 10 15 15 N 1.20910 * 111.84463 * 359.70696 * 14 12 11 16 16 C 1.48377 * 105.79701 * 334.78511 * 7 6 4 17 17 C 1.54616 * 110.32746 * 152.92610 * 4 3 2 18 18 H 1.09001 * 110.74249 * 22.22172 * 17 4 3 19 19 C 1.52999 * 110.73839 * 259.07630 * 17 4 3 20 20 N 1.46503 * 109.47039 * 174.99908 * 19 17 4 21 21 C 1.36932 * 120.00188 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99597 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00204 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00101 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47280 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47173 * 120.00073 * 25 23 21 28 28 H 1.48507 * 109.46910 * 239.99921 * 25 23 21 29 29 H 1.09006 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47187 * 299.99786 * 1 2 3 31 31 H 1.09004 * 109.47222 * 60.00374 * 1 2 3 32 32 H 1.09001 * 109.46793 * 240.00107 * 2 1 3 33 33 H 1.09000 * 109.47022 * 120.00089 * 2 1 3 34 34 H 1.09002 * 109.91501 * 1.77436 * 6 4 3 35 35 H 1.08999 * 109.90987 * 122.86047 * 6 4 3 36 36 H 1.07992 * 128.03761 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.47097 * 89.99624 * 13 12 11 38 38 H 1.09002 * 109.47061 * 209.99452 * 13 12 11 39 39 H 1.08996 * 109.46983 * 329.99663 * 13 12 11 40 40 H 1.09005 * 110.51886 * 280.62106 * 16 7 6 41 41 H 1.09003 * 110.69336 * 157.59072 * 16 7 6 42 42 H 1.08993 * 109.47040 * 294.99926 * 19 17 4 43 43 H 1.08996 * 109.46892 * 55.00553 * 19 17 4 44 44 H 0.97001 * 119.99785 * 0.02562 * 20 19 17 45 45 H 0.96998 * 119.99559 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8768 0.6135 -0.5226 6 6 3.9618 1.5386 1.4429 7 7 4.6262 2.8467 1.5938 8 6 4.8079 3.5378 2.7367 9 8 5.3760 4.6114 2.7135 10 6 4.3141 2.9875 4.0225 11 6 4.4246 3.5875 5.3080 12 6 3.8267 2.6985 6.1346 13 6 3.6587 2.8291 7.6265 14 8 3.4130 1.6795 5.3688 15 7 3.6830 1.8540 4.2032 16 6 5.0486 3.2451 0.2284 17 6 3.8640 2.7896 -0.6605 18 1 3.0533 3.5175 -0.6307 19 6 4.3259 2.5546 -2.1000 20 7 4.6157 3.8421 -2.7362 21 6 5.0484 3.8822 -4.0347 22 1 5.1757 2.9647 -4.5901 23 6 5.3234 5.1020 -4.6373 24 7 5.1688 6.2202 -3.9603 25 14 5.9131 5.1567 -6.4090 26 1 6.0047 3.7742 -6.9431 27 1 4.9528 5.9411 -7.2263 28 1 7.2511 5.7985 -6.4658 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1342 1.4590 2.1478 35 1 4.6779 0.7360 1.6192 36 1 4.8798 4.5326 5.5643 37 1 2.7172 3.3337 7.8433 38 1 3.6522 1.8377 8.0795 39 1 4.4851 3.4102 8.0357 40 1 5.9641 2.7259 -0.0551 41 1 5.1828 4.3251 0.1665 42 1 5.2261 1.9401 -2.0970 43 1 3.5391 2.0440 -2.6552 44 1 4.5017 4.6661 -2.2373 45 1 5.3614 7.0726 -4.3814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692017275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:58 Heat of formation + Delta-G solvation = 2.767978 kcal Electronic energy + Delta-G solvation = -27597.459243 eV Core-core repulsion = 23619.351678 eV Total energy + Delta-G solvation = -3978.107565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.30448 -40.14370 -38.49776 -36.55395 -34.73873 -34.37265 -33.62700 -32.16294 -31.28474 -29.69090 -28.34828 -28.12380 -26.29056 -24.34487 -23.47198 -22.88447 -22.51433 -21.75536 -20.13140 -19.33834 -18.08535 -17.55346 -17.36207 -17.01669 -16.60329 -16.05202 -15.51586 -15.22828 -14.70860 -14.45798 -14.29846 -14.00287 -13.84955 -13.72097 -13.63135 -13.27269 -13.09446 -12.88521 -12.78237 -12.54971 -12.40038 -12.13433 -11.82393 -11.52585 -11.33555 -11.22388 -11.02432 -10.77112 -10.73899 -10.66071 -10.40971 -10.25473 -10.01511 -9.77367 -9.70683 -9.53409 -8.88346 -8.68731 -6.92112 -5.74198 -3.04006 0.91771 1.43815 2.58120 2.77655 3.08475 3.45229 3.50075 3.52949 3.60405 3.74571 4.14299 4.53200 4.55253 4.63731 4.71819 4.85063 4.94108 4.96710 5.00046 5.05541 5.15056 5.21827 5.27989 5.33916 5.37082 5.40489 5.58060 5.61478 5.65135 5.68606 5.75172 5.82933 5.87455 6.01980 6.04730 6.13845 6.28279 6.32931 6.68589 6.74678 7.26619 7.39271 7.71542 7.72808 8.01636 8.43492 9.54992 10.11009 10.45809 11.48434 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003098 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.055130 B = 9034.464950 C =10738.670151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.371 6.371 4 C 0.084 3.916 5 H 0.083 0.917 6 C 0.077 3.923 7 N -0.604 5.604 8 C 0.612 3.388 9 O -0.519 6.519 10 C -0.015 4.015 11 C -0.184 4.184 12 C -0.036 4.036 13 C -0.073 4.073 14 O 0.117 5.883 15 N -0.329 5.329 16 C 0.117 3.883 17 C -0.102 4.102 18 H 0.097 0.903 19 C 0.166 3.834 20 N -0.732 5.732 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.181 0.819 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.022 0.978 43 H 0.027 0.973 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -13.585 22.922 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.290 6.290 4 C 0.025 3.975 5 H 0.100 0.900 6 C -0.047 4.047 7 N -0.337 5.337 8 C 0.398 3.602 9 O -0.393 6.393 10 C -0.174 4.174 11 C -0.206 4.206 12 C -0.099 4.099 13 C -0.130 4.130 14 O 0.042 5.958 15 N -0.032 5.032 16 C -0.004 4.004 17 C -0.122 4.122 18 H 0.115 0.885 19 C 0.038 3.962 20 N -0.376 5.376 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.198 0.802 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.070 -13.795 21.941 26.619 hybrid contribution 0.734 0.757 -0.526 1.178 sum -5.336 -13.039 21.415 25.633 Atomic orbital electron populations 1.21731 0.93851 1.02000 1.03215 1.22530 0.95640 0.84109 1.00008 1.88023 1.20095 1.26150 1.94695 1.23025 0.81628 0.99328 0.93532 0.89950 1.22834 0.98137 0.84835 0.98861 1.48597 1.56745 1.21074 1.07319 1.16413 0.79607 0.83617 0.80526 1.90836 1.42709 1.20491 1.85308 1.23481 1.03333 0.93647 0.96897 1.22451 1.05291 1.03020 0.89862 1.24486 1.00011 0.88449 0.96955 1.20366 1.04369 1.04426 0.83861 1.84782 1.59135 1.39332 1.12530 1.74244 1.14328 1.18086 0.96505 1.22739 0.97029 1.03093 0.77497 1.22614 0.97774 0.95880 0.95895 0.88463 1.20613 0.96897 0.90418 0.88248 1.42352 1.80652 1.02215 1.12388 1.19235 1.36701 0.92642 0.88612 0.91099 1.24758 1.02421 0.95380 0.98356 1.69677 1.55064 0.96880 1.36253 0.86119 0.78042 0.77263 0.84750 1.20578 1.21864 1.21859 0.91290 0.92029 0.91657 0.93101 0.93537 0.88636 0.90999 0.80169 0.89164 0.89627 0.88765 0.89910 0.88380 0.95987 0.95550 0.78117 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.59 6.51 37.16 0.24 0.83 16 3 O -0.37 -5.39 9.94 -35.23 -0.35 -5.74 16 4 C 0.08 1.18 3.04 -25.36 -0.08 1.10 16 5 H 0.08 1.01 7.56 -51.93 -0.39 0.62 16 6 C 0.08 1.04 6.10 -2.98 -0.02 1.02 16 7 N -0.60 -9.65 3.30 -170.47 -0.56 -10.21 16 8 C 0.61 10.33 7.92 -12.11 -0.10 10.23 16 9 O -0.52 -10.24 17.18 5.38 0.09 -10.15 16 10 C -0.01 -0.20 7.04 -82.52 -0.58 -0.78 16 11 C -0.18 -1.97 10.92 -39.07 -0.43 -2.40 16 12 C -0.04 -0.30 7.47 -35.35 -0.26 -0.56 16 13 C -0.07 -0.26 10.45 36.01 0.38 0.12 16 14 O 0.12 1.21 11.18 17.24 0.19 1.40 16 15 N -0.33 -4.21 9.41 33.30 0.31 -3.89 16 16 C 0.12 2.01 6.46 -1.98 -0.01 1.99 16 17 C -0.10 -1.75 2.82 -88.75 -0.25 -2.00 16 18 H 0.10 1.86 8.08 -51.93 -0.42 1.44 16 19 C 0.17 3.32 5.58 -4.04 -0.02 3.30 16 20 N -0.73 -18.65 5.52 -59.91 -0.33 -18.98 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 25 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.32 6.05 -51.93 -0.31 1.01 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 1.35 7.94 -51.93 -0.41 0.94 16 41 H 0.10 1.91 7.87 -51.93 -0.41 1.50 16 42 H 0.02 0.43 7.99 -51.93 -0.42 0.01 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -34.65 379.27 -7.09 -41.75 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.87 Total: 6.00 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.00 Total: 4.38 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.14 Total: -61.00 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.06 Total: -14.48 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.65 -7.09 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692017275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.516 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds