Wall clock time and date at job start Tue Mar 31 2020 13:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47275 * 2 1 4 4 H 1.09000 * 109.46443 * 55.37236 * 3 2 1 5 5 C 1.53000 * 109.47360 * 175.37565 * 3 2 1 6 6 N 1.46500 * 109.47115 * 174.99974 * 5 3 2 7 7 C 1.34773 * 119.99765 * 179.97438 * 6 5 3 8 8 O 1.21690 * 120.00147 * 0.02562 * 7 6 5 9 9 C 1.46666 * 119.99725 * 180.02562 * 7 6 5 10 10 O 1.34909 * 125.98607 * 0.02677 * 9 7 6 11 11 C 1.33934 * 109.38256 * 179.97438 * 10 9 7 12 12 C 1.35131 * 108.76551 * 359.72321 * 11 10 9 13 13 C 1.36542 * 125.98434 * 180.02562 * 9 7 6 14 14 C 1.50694 * 126.64702 * 0.02562 * 13 9 7 15 15 N 1.46897 * 109.46852 * 295.37585 * 3 2 1 16 16 C 1.46901 * 111.00287 * 302.88374 * 15 3 2 17 17 C 1.50698 * 109.46989 * 185.63699 * 16 15 3 18 18 O 1.21289 * 120.00379 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99587 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99751 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00165 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99958 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99859 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00000 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46998 * 90.00933 * 24 22 20 26 26 H 1.48506 * 109.46920 * 210.00190 * 24 22 20 27 27 H 1.48496 * 109.47287 * 330.00269 * 24 22 20 28 28 H 1.09000 * 109.47429 * 58.73270 * 1 2 3 29 29 H 1.09003 * 109.47241 * 178.73245 * 1 2 3 30 30 H 1.08996 * 109.47547 * 298.73172 * 1 2 3 31 31 H 1.09005 * 109.47581 * 240.00296 * 2 1 3 32 32 H 1.09004 * 109.47046 * 119.99942 * 2 1 3 33 33 H 1.09001 * 109.46778 * 54.99926 * 5 3 2 34 34 H 1.09004 * 109.46925 * 295.00150 * 5 3 2 35 35 H 0.97003 * 119.99558 * 0.02562 * 6 5 3 36 36 H 1.07995 * 125.61333 * 180.02562 * 11 10 9 37 37 H 1.08001 * 126.43883 * 180.25898 * 12 11 10 38 38 H 1.08995 * 109.47333 * 90.00133 * 14 13 9 39 39 H 1.09000 * 109.47266 * 329.99787 * 14 13 9 40 40 H 1.09011 * 109.46932 * 210.00027 * 14 13 9 41 41 H 1.00907 * 111.00148 * 66.83792 * 15 3 2 42 42 H 1.08996 * 109.47004 * 305.63593 * 16 15 3 43 43 H 1.09000 * 109.46618 * 65.63870 * 16 15 3 44 44 H 0.97000 * 120.00021 * 359.97438 * 19 17 16 45 45 H 0.97007 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9797 0.8457 5 6 3.5656 1.4441 0.1163 6 7 4.0630 2.8169 -0.0036 7 6 5.3861 3.0629 0.0697 8 8 6.1675 2.1448 0.2349 9 6 5.8841 4.4373 -0.0497 10 8 5.1297 5.5405 -0.2336 11 6 5.9243 6.6170 -0.2957 12 6 7.2071 6.2196 -0.1458 13 6 7.1923 4.8242 0.0057 14 6 8.3880 3.9277 0.1990 15 7 1.6436 2.1020 -1.2514 16 6 2.1483 1.3651 -2.4176 17 6 1.8429 2.1411 -3.6728 18 8 1.2623 3.2037 -3.6027 19 7 2.2148 1.6543 -4.8733 20 6 1.9374 2.3605 -6.0152 21 1 1.4212 3.3070 -5.9527 22 6 2.3213 1.8589 -7.2528 23 7 2.9498 0.7073 -7.3288 24 14 1.9427 2.8208 -8.8087 25 1 3.0701 3.7394 -9.1094 26 1 1.7572 1.8777 -9.9409 27 1 0.7000 3.6097 -8.6130 28 1 -0.3634 0.5334 -0.8784 29 1 -0.3634 -1.0274 -0.0227 30 1 -0.3634 0.4940 0.9011 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9912 0.8326 -0.6793 34 1 3.8566 1.0353 1.0840 35 1 3.4400 3.5487 -0.1349 36 1 5.5937 7.6353 -0.4370 37 1 8.0799 6.8557 -0.1461 38 1 8.7539 3.5954 -0.7724 39 1 8.1002 3.0614 0.7946 40 1 9.1751 4.4780 0.7149 41 1 0.6419 2.2135 -1.2998 42 1 3.2263 1.2331 -2.3254 43 1 1.6656 0.3890 -2.4673 44 1 2.6794 0.8046 -4.9293 45 1 3.2182 0.3572 -8.1928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698592237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:35 Heat of formation + Delta-G solvation = -63.610800 kcal Electronic energy + Delta-G solvation = -27533.903779 eV Core-core repulsion = 23552.917815 eV Total energy + Delta-G solvation = -3980.985965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.72402 -39.62613 -38.54509 -37.27306 -34.57893 -33.93069 -33.70268 -31.77297 -31.15302 -30.65606 -28.94725 -27.48516 -26.47318 -24.32077 -23.78817 -22.41476 -21.14756 -20.51267 -19.77076 -19.08559 -18.07358 -17.85198 -16.85684 -16.37797 -16.09926 -15.92447 -15.51960 -14.97972 -14.67477 -14.35871 -14.22554 -14.15349 -13.80776 -13.57086 -13.43006 -13.19392 -13.11012 -13.02851 -12.60264 -12.55654 -12.30714 -11.92938 -11.85646 -11.77344 -11.49606 -11.37780 -11.07317 -10.87612 -10.79528 -10.38776 -10.20429 -10.09798 -9.76708 -9.49134 -9.10928 -8.58793 -8.49775 -8.07416 -7.94301 -6.40016 -3.80856 1.05356 2.27797 2.69292 3.18641 3.20149 3.27048 3.29039 3.32779 3.92647 4.10237 4.33453 4.59662 4.63501 4.70640 4.81123 4.94078 4.97714 5.16340 5.24908 5.27730 5.38142 5.40910 5.46263 5.54679 5.58180 5.67409 5.71091 5.73928 5.80913 5.86503 5.95974 5.98362 6.06510 6.07676 6.18648 6.27583 6.31588 6.45788 6.81613 7.13856 7.56134 7.56495 7.60238 8.07711 8.16434 8.62975 9.19559 9.56276 10.07740 10.77740 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.003798 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.763912 B = 7371.028424 C = 9455.124902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.126 3.874 6 N -0.701 5.701 7 C 0.601 3.399 8 O -0.529 6.529 9 C -0.081 4.081 10 O -0.158 6.158 11 C -0.002 4.002 12 C -0.229 4.229 13 C -0.092 4.092 14 C -0.093 4.093 15 N -0.659 5.659 16 C 0.044 3.956 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.416 0.584 36 H 0.209 0.791 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.353 0.647 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 3.362 17.827 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.002 3.998 6 N -0.352 5.352 7 C 0.388 3.612 8 O -0.408 6.408 9 C -0.133 4.133 10 O -0.053 6.053 11 C -0.073 4.073 12 C -0.248 4.248 13 C -0.095 4.095 14 C -0.150 4.150 15 N -0.291 5.291 16 C -0.089 4.089 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.253 0.747 36 H 0.226 0.774 37 H 0.172 0.828 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.671 3.731 17.793 18.771 hybrid contribution -0.546 -0.344 -1.118 1.291 sum 4.126 3.386 16.675 17.508 Atomic orbital electron populations 1.21755 0.95236 1.02012 1.02035 1.22211 0.96799 0.97845 1.03136 1.21921 0.94092 0.93662 0.94114 0.89173 1.21473 0.93151 0.83126 1.02018 1.45710 1.06713 1.10711 1.72052 1.16521 0.82727 0.84759 0.77243 1.90823 1.56090 1.42867 1.51026 1.21870 0.90228 0.86853 1.14342 1.84107 1.37194 1.14583 1.69394 1.24362 0.89388 0.91363 1.02139 1.21718 0.98140 0.94761 1.10169 1.20617 0.94220 0.94436 1.00200 1.20408 0.93273 0.98465 1.02851 1.60184 1.19535 1.49892 0.99534 1.21762 1.01153 0.95317 0.90639 1.19795 0.85262 0.87915 0.84276 1.90516 1.45968 1.23654 1.86516 1.41863 1.51613 1.21786 1.04833 1.19687 1.35251 1.04711 0.83202 0.87976 1.25252 0.96878 0.96384 0.99395 1.69617 1.39704 1.18622 1.26345 0.85874 0.79000 0.78962 0.80545 1.20416 1.20938 1.19438 0.92424 0.92464 0.92563 0.90934 0.91268 0.91031 0.90946 0.74726 0.77425 0.82811 0.90791 0.89559 0.91704 0.82669 0.89595 0.93358 0.77543 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.70 37.16 0.36 -1.08 16 2 C -0.16 -1.56 5.10 -26.73 -0.14 -1.70 16 3 C 0.07 0.80 2.70 -67.71 -0.18 0.62 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.13 1.54 4.76 -4.04 -0.02 1.52 16 6 N -0.70 -9.63 5.38 -61.62 -0.33 -9.96 16 7 C 0.60 9.28 7.79 -12.86 -0.10 9.18 16 8 O -0.53 -9.08 14.74 5.20 0.08 -9.00 16 9 C -0.08 -1.18 7.13 -36.79 -0.26 -1.45 16 10 O -0.16 -2.14 10.40 5.00 0.05 -2.09 16 11 C 0.00 -0.02 12.08 29.63 0.36 0.33 16 12 C -0.23 -2.45 10.83 -39.89 -0.43 -2.89 16 13 C -0.09 -1.21 6.20 -104.44 -0.65 -1.86 16 14 C -0.09 -1.09 9.82 36.00 0.35 -0.73 16 15 N -0.66 -9.59 5.32 -107.99 -0.57 -10.16 16 16 C 0.04 0.75 5.31 -4.98 -0.03 0.72 16 17 C 0.44 10.36 7.83 -10.99 -0.09 10.27 16 18 O -0.58 -15.57 15.90 5.55 0.09 -15.49 16 19 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.62 6.87 -51.93 -0.36 0.27 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.79 6.23 -51.93 -0.32 0.46 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.97 6.61 -51.93 -0.34 0.63 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.42 5.72 7.90 -40.82 -0.32 5.40 16 36 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.11 6.44 -51.93 -0.33 0.78 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.35 5.23 7.29 -39.29 -0.29 4.94 16 42 H 0.09 1.46 6.22 -51.93 -0.32 1.14 16 43 H 0.05 0.75 6.48 -51.93 -0.34 0.42 16 44 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -33.27 375.88 -6.71 -39.97 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -6.26 Total: 18.51 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.06 Total: 4.90 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.24 Total: -58.69 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: 0.22 Total: -26.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.27 -6.71 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698592237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.638 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds