Wall clock time and date at job start Tue Mar 31 2020 13:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47275 * 2 1 4 4 H 1.09000 * 109.46443 * 55.37236 * 3 2 1 5 5 C 1.53000 * 109.47360 * 175.37565 * 3 2 1 6 6 N 1.46500 * 109.47115 * 174.99974 * 5 3 2 7 7 C 1.34773 * 119.99765 * 179.97438 * 6 5 3 8 8 O 1.21690 * 120.00147 * 0.02562 * 7 6 5 9 9 C 1.46666 * 119.99725 * 180.02562 * 7 6 5 10 10 O 1.34909 * 125.98607 * 0.02677 * 9 7 6 11 11 C 1.33934 * 109.38256 * 179.97438 * 10 9 7 12 12 C 1.35131 * 108.76551 * 359.72321 * 11 10 9 13 13 C 1.36542 * 125.98434 * 180.02562 * 9 7 6 14 14 C 1.50694 * 126.64702 * 0.02562 * 13 9 7 15 15 N 1.46897 * 109.46852 * 295.37585 * 3 2 1 16 16 C 1.46901 * 111.00287 * 302.88374 * 15 3 2 17 17 C 1.50698 * 109.46989 * 185.63699 * 16 15 3 18 18 O 1.21289 * 120.00379 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99587 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99751 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00165 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99958 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99859 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00000 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46998 * 90.00933 * 24 22 20 26 26 H 1.48506 * 109.46920 * 210.00190 * 24 22 20 27 27 H 1.48496 * 109.47287 * 330.00269 * 24 22 20 28 28 H 1.09000 * 109.47429 * 58.73270 * 1 2 3 29 29 H 1.09003 * 109.47241 * 178.73245 * 1 2 3 30 30 H 1.08996 * 109.47547 * 298.73172 * 1 2 3 31 31 H 1.09005 * 109.47581 * 240.00296 * 2 1 3 32 32 H 1.09004 * 109.47046 * 119.99942 * 2 1 3 33 33 H 1.09001 * 109.46778 * 54.99926 * 5 3 2 34 34 H 1.09004 * 109.46925 * 295.00150 * 5 3 2 35 35 H 0.97003 * 119.99558 * 0.02562 * 6 5 3 36 36 H 1.07995 * 125.61333 * 180.02562 * 11 10 9 37 37 H 1.08001 * 126.43883 * 180.25898 * 12 11 10 38 38 H 1.08995 * 109.47333 * 90.00133 * 14 13 9 39 39 H 1.09000 * 109.47266 * 329.99787 * 14 13 9 40 40 H 1.09011 * 109.46932 * 210.00027 * 14 13 9 41 41 H 1.00907 * 111.00148 * 66.83792 * 15 3 2 42 42 H 1.08996 * 109.47004 * 305.63593 * 16 15 3 43 43 H 1.09000 * 109.46618 * 65.63870 * 16 15 3 44 44 H 0.97000 * 120.00021 * 359.97438 * 19 17 16 45 45 H 0.97007 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9797 0.8457 5 6 3.5656 1.4441 0.1163 6 7 4.0630 2.8169 -0.0036 7 6 5.3861 3.0629 0.0697 8 8 6.1675 2.1448 0.2349 9 6 5.8841 4.4373 -0.0497 10 8 5.1297 5.5405 -0.2336 11 6 5.9243 6.6170 -0.2957 12 6 7.2071 6.2196 -0.1458 13 6 7.1923 4.8242 0.0057 14 6 8.3880 3.9277 0.1990 15 7 1.6436 2.1020 -1.2514 16 6 2.1483 1.3651 -2.4176 17 6 1.8429 2.1411 -3.6728 18 8 1.2623 3.2037 -3.6027 19 7 2.2148 1.6543 -4.8733 20 6 1.9374 2.3605 -6.0152 21 1 1.4212 3.3070 -5.9527 22 6 2.3213 1.8589 -7.2528 23 7 2.9498 0.7073 -7.3288 24 14 1.9427 2.8208 -8.8087 25 1 3.0701 3.7394 -9.1094 26 1 1.7572 1.8777 -9.9409 27 1 0.7000 3.6097 -8.6130 28 1 -0.3634 0.5334 -0.8784 29 1 -0.3634 -1.0274 -0.0227 30 1 -0.3634 0.4940 0.9011 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9912 0.8326 -0.6793 34 1 3.8566 1.0353 1.0840 35 1 3.4400 3.5487 -0.1349 36 1 5.5937 7.6353 -0.4370 37 1 8.0799 6.8557 -0.1461 38 1 8.7539 3.5954 -0.7724 39 1 8.1002 3.0614 0.7946 40 1 9.1751 4.4780 0.7149 41 1 0.6419 2.2135 -1.2998 42 1 3.2263 1.2331 -2.3254 43 1 1.6656 0.3890 -2.4673 44 1 2.6794 0.8046 -4.9293 45 1 3.2182 0.3572 -8.1928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698592237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:34 Heat of formation + Delta-G solvation = -89.054230 kcal Electronic energy + Delta-G solvation = -27535.007089 eV Core-core repulsion = 23552.917815 eV Total energy + Delta-G solvation = -3982.089275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.65658 -40.80238 -40.12791 -38.65377 -35.97992 -35.55537 -34.76105 -33.31448 -32.76769 -31.57705 -29.96184 -28.62393 -27.87371 -26.08425 -24.75191 -23.32023 -22.07305 -21.78879 -21.03770 -20.45947 -19.88006 -19.02417 -18.34037 -17.42538 -17.15889 -17.08415 -16.83022 -16.50324 -16.06356 -15.89922 -15.55449 -15.40597 -15.10781 -14.88232 -14.40073 -14.35703 -14.08437 -14.01610 -13.87643 -13.55048 -13.53019 -13.51216 -13.17087 -12.90667 -12.77630 -12.74820 -12.42435 -12.31557 -12.13057 -11.85415 -11.67462 -11.50367 -11.22731 -10.66685 -10.35597 -10.20266 -10.01659 -9.53966 -9.34297 -8.46975 -5.95886 0.04717 1.37036 1.40330 1.41448 1.53355 1.74915 2.05355 2.10505 2.26268 2.30401 2.93703 3.20179 3.51199 3.70011 3.77383 3.83587 3.94973 4.03853 4.15553 4.27055 4.35118 4.45909 4.51187 4.54423 4.56926 4.62547 4.70829 4.75621 4.79044 4.80582 4.91937 5.11415 5.11729 5.18282 5.25275 5.33440 5.38002 5.39993 5.49449 5.86624 5.89555 6.07853 6.39694 6.49139 6.59258 7.04388 7.12169 7.55926 8.10988 8.70582 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.003798 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.763912 B = 7371.028424 C = 9455.124902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.083 3.917 4 H 0.112 0.888 5 C 0.125 3.875 6 N -0.698 5.698 7 C 0.594 3.406 8 O -0.557 6.557 9 C -0.121 4.121 10 O -0.175 6.175 11 C 0.006 3.994 12 C -0.235 4.235 13 C -0.099 4.099 14 C -0.092 4.092 15 N -0.667 5.667 16 C 0.064 3.936 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.415 0.585 36 H 0.251 0.749 37 H 0.185 0.815 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.352 0.648 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.394 0.606 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 4.094 18.513 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C -0.027 4.027 4 H 0.130 0.870 5 C 0.001 3.999 6 N -0.347 5.347 7 C 0.382 3.618 8 O -0.439 6.439 9 C -0.173 4.173 10 O -0.070 6.070 11 C -0.063 4.063 12 C -0.253 4.253 13 C -0.102 4.102 14 C -0.148 4.148 15 N -0.300 5.300 16 C -0.069 4.069 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.252 0.748 36 H 0.267 0.733 37 H 0.202 0.798 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.173 0.827 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.227 0.773 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.821 4.438 18.502 19.628 hybrid contribution -0.575 -0.497 -1.257 1.469 sum 4.245 3.941 17.245 18.192 Atomic orbital electron populations 1.21744 0.94796 1.02392 1.01922 1.22165 0.97039 0.96619 1.03642 1.21969 0.93219 0.94744 0.92771 0.87018 1.21591 0.93785 0.82246 1.02285 1.45750 1.06285 1.11273 1.71427 1.16757 0.82976 0.85172 0.76931 1.90789 1.56679 1.43820 1.52600 1.21853 0.91069 0.86991 1.17341 1.84088 1.37995 1.15086 1.69875 1.25320 0.89267 0.92080 0.99620 1.22099 0.99474 0.93826 1.09921 1.21046 0.94053 0.96005 0.99097 1.20415 0.93627 0.98110 1.02666 1.60130 1.19506 1.50513 0.99895 1.21508 1.01527 0.95226 0.88608 1.20865 0.83371 0.87633 0.85431 1.90481 1.47162 1.25406 1.87300 1.41955 1.52304 1.21895 1.05168 1.19669 1.36848 1.04798 0.84923 0.90226 1.26049 0.96182 0.97233 1.01866 1.69684 1.39789 1.19460 1.27387 0.84935 0.78719 0.77842 0.76892 1.19800 1.19518 1.19522 0.94130 0.91791 0.91157 0.92067 0.89142 0.92588 0.89352 0.74799 0.73309 0.79814 0.91110 0.91253 0.88951 0.82688 0.89335 0.91296 0.77297 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.70 71.98 0.70 -1.85 16 2 C -0.16 -2.71 5.10 30.59 0.16 -2.55 16 3 C 0.08 1.69 2.70 44.92 0.12 1.81 16 4 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.12 2.95 4.76 86.38 0.41 3.36 16 6 N -0.70 -19.30 5.38 -467.10 -2.51 -21.82 16 7 C 0.59 18.84 7.79 86.44 0.67 19.51 16 8 O -0.56 -19.78 14.74 -4.32 -0.06 -19.84 16 9 C -0.12 -3.59 7.13 24.08 0.17 -3.42 16 10 O -0.17 -4.67 10.40 -5.02 -0.05 -4.72 16 11 C 0.01 0.12 12.08 67.10 0.81 0.93 16 12 C -0.23 -4.55 10.83 22.07 0.24 -4.31 16 13 C -0.10 -2.56 6.20 -19.75 -0.12 -2.68 16 14 C -0.09 -2.11 9.82 71.23 0.70 -1.41 16 15 N -0.67 -19.05 5.32 -495.58 -2.64 -21.68 16 16 C 0.06 2.18 5.31 85.56 0.45 2.63 16 17 C 0.44 21.03 7.83 87.66 0.69 21.71 16 18 O -0.62 -33.83 15.90 -3.06 -0.05 -33.88 16 19 N -0.58 -30.18 5.29 -306.99 -1.62 -31.80 16 20 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 24 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.04 0.82 6.87 -2.39 -0.02 0.81 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.23 6.23 -2.38 -0.01 1.21 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.52 6.61 -2.39 -0.02 1.50 16 34 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.42 11.49 7.90 -92.71 -0.73 10.76 16 36 H 0.25 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.83 6.44 -2.39 -0.02 1.82 16 40 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.35 10.26 7.29 -89.69 -0.65 9.60 16 42 H 0.09 3.03 6.22 -2.39 -0.01 3.02 16 43 H 0.07 2.10 6.48 -2.39 -0.02 2.08 16 44 H 0.39 19.90 7.90 -92.71 -0.73 19.16 16 45 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -74.00 375.88 0.59 -73.41 By element: Atomic # 1 Polarization: 51.33 SS G_CDS: -1.06 Total: 50.26 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.28 Total: 15.09 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -6.49 Total: -125.83 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -0.16 Total: -58.45 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -74.00 0.59 -73.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698592237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.648 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds