Wall clock time and date at job start Tue Mar 31 2020 13:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09008 * 109.46793 * 54.99972 * 3 2 1 5 5 C 1.53000 * 109.46776 * 174.99584 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21626 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.47226 * 120.00001 * 180.02562 * 7 6 5 10 10 C 1.40662 * 120.65693 * 270.00255 * 9 7 6 11 11 O 1.35509 * 120.89277 * 359.97438 * 10 9 7 12 12 C 1.42898 * 116.99796 * 179.97438 * 11 10 9 13 13 C 1.39161 * 118.20624 * 180.02562 * 10 9 7 14 14 C 1.37945 * 119.39031 * 359.97438 * 13 10 9 15 15 N 1.32055 * 121.28729 * 0.02562 * 14 13 10 16 16 C 1.32209 * 121.97763 * 359.69828 * 15 14 13 17 17 O 1.35431 * 119.77795 * 180.30865 * 16 15 14 18 18 C 1.42896 * 116.99781 * 0.27753 * 17 16 15 19 19 N 1.46496 * 109.47348 * 294.99912 * 3 2 1 20 20 C 1.36941 * 120.00198 * 84.99697 * 19 3 2 21 21 H 1.07996 * 119.99379 * 0.02562 * 20 19 3 22 22 C 1.38810 * 119.99828 * 180.02562 * 20 19 3 23 23 N 1.31617 * 120.00148 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99611 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47407 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47025 * 120.00299 * 24 22 20 27 27 H 1.48504 * 109.47341 * 239.99944 * 24 22 20 28 28 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47547 * 300.00062 * 1 2 3 30 30 H 1.09005 * 109.47093 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47094 * 239.99657 * 2 1 3 32 32 H 1.09004 * 109.46831 * 119.99499 * 2 1 3 33 33 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 34 34 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 36 36 H 1.08996 * 109.47549 * 300.00183 * 12 11 10 37 37 H 1.09001 * 109.46762 * 59.99927 * 12 11 10 38 38 H 1.09001 * 109.47112 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.30993 * 180.02562 * 13 10 9 40 40 H 1.07996 * 119.36029 * 179.97438 * 14 13 10 41 41 H 1.09000 * 109.47610 * 59.99570 * 18 17 16 42 42 H 1.09006 * 109.46699 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.47091 * 299.99430 * 18 17 16 44 44 H 0.97002 * 119.99429 * 265.00252 * 19 3 2 45 45 H 0.97004 * 120.00027 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0860 8 8 6.1657 2.1456 0.2571 9 6 5.8864 4.4422 -0.0339 10 6 6.2286 4.9744 -1.2902 11 8 6.1064 4.2318 -2.4170 12 6 6.4771 4.8553 -3.6482 13 6 6.6971 6.2837 -1.3443 14 6 6.8096 7.0112 -0.1778 15 7 6.4819 6.4895 0.9902 16 6 6.0264 5.2534 1.1018 17 8 5.6977 4.7652 2.3216 18 6 5.8630 5.6424 3.4374 19 7 1.6524 2.0975 -1.2518 20 6 0.4156 2.6735 -1.3688 21 1 -0.2740 2.6452 -0.5382 22 6 0.0482 3.2936 -2.5551 23 7 0.8885 3.3276 -3.5676 24 14 -1.6387 4.0799 -2.7145 25 1 -2.3876 3.9068 -1.4440 26 1 -1.4844 5.5282 -3.0042 27 1 -2.3849 3.4304 -3.8220 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8498 1.0377 1.0962 34 1 3.9954 0.8311 -0.6658 35 1 3.4410 3.5484 -0.1308 36 1 5.8573 5.7372 -3.8100 37 1 7.5253 5.1511 -3.6045 38 1 6.3320 4.1532 -4.4692 39 1 6.9693 6.7264 -2.2911 40 1 7.1737 8.0271 -0.2204 41 1 5.2421 6.5275 3.2990 42 1 5.5641 5.1285 4.3510 43 1 6.9087 5.9405 3.5134 44 1 2.2720 2.1231 -1.9977 45 1 0.6317 3.7607 -4.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698606910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:26 Heat of formation + Delta-G solvation = -62.726624 kcal Electronic energy + Delta-G solvation = -28271.508346 eV Core-core repulsion = 24290.560722 eV Total energy + Delta-G solvation = -3980.947624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08896 -39.19974 -38.81758 -37.33624 -36.57244 -33.54635 -32.39119 -31.88401 -30.84564 -29.68866 -28.02878 -27.86111 -26.86986 -24.73717 -23.46713 -22.55618 -22.34600 -20.29613 -19.88449 -18.96962 -17.79758 -17.53406 -16.96756 -16.53336 -16.34339 -15.68364 -15.43909 -15.24571 -15.19385 -14.59124 -14.28874 -13.96853 -13.76353 -13.62052 -13.36119 -13.13060 -12.95603 -12.87109 -12.44454 -12.03698 -11.94112 -11.75269 -11.53842 -11.37921 -11.23075 -10.94758 -10.88111 -10.71317 -10.39789 -10.18751 -10.14860 -9.96497 -9.51715 -9.41256 -8.97657 -8.93143 -8.67740 -8.48627 -6.99621 -5.79151 -3.07542 0.88216 1.22567 2.59731 2.98569 3.38799 3.39562 3.46431 3.47715 3.50636 3.74649 4.23628 4.54877 4.56384 4.85884 4.96384 5.01617 5.10769 5.17354 5.23527 5.37740 5.45811 5.48441 5.48834 5.51239 5.60807 5.63902 5.80772 5.97851 5.98820 6.01248 6.04943 6.24000 6.48577 6.60818 6.63328 6.66178 6.99774 7.04159 7.08818 7.10971 7.27639 7.69192 7.69817 8.05456 8.38272 8.67913 9.50320 10.06547 10.42832 11.42795 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.004290 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.133447 B = 6525.943575 C = 7384.403443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.698 5.698 7 C 0.586 3.414 8 O -0.545 6.545 9 C -0.231 4.231 10 C 0.239 3.761 11 O -0.290 6.290 12 C 0.027 3.973 13 C -0.300 4.300 14 C 0.187 3.813 15 N -0.563 5.563 16 C 0.385 3.615 17 O -0.295 6.295 18 C 0.041 3.959 19 N -0.721 5.721 20 C -0.233 4.233 21 H 0.073 0.927 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.292 1.292 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.386 0.614 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 6.688 6.540 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.348 5.348 7 C 0.369 3.631 8 O -0.423 6.423 9 C -0.238 4.238 10 C 0.184 3.816 11 O -0.199 6.199 12 C -0.068 4.068 13 C -0.322 4.322 14 C 0.031 3.969 15 N -0.291 5.291 16 C 0.206 3.794 17 O -0.200 6.200 18 C -0.054 4.054 19 N -0.363 5.363 20 C -0.364 4.364 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.220 1.220 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.220 0.780 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.236 6.085 7.470 15.573 hybrid contribution -1.013 0.801 -1.388 1.896 sum 11.223 6.885 6.082 14.503 Atomic orbital electron populations 1.21767 0.95776 0.99570 1.03209 1.22062 0.96891 0.98408 1.00040 1.20570 0.89987 0.92781 0.91392 0.92853 1.21687 0.95518 0.82550 1.01127 1.45886 1.06620 1.10736 1.71552 1.17354 0.82658 0.86764 0.76277 1.90747 1.56362 1.45288 1.49924 1.18956 1.16807 0.97936 0.90136 1.18879 0.88034 0.88971 0.85734 1.86142 1.79981 1.40115 1.13708 1.23238 0.99876 1.00175 0.83488 1.21977 1.13403 0.95000 1.01804 1.22225 0.90120 0.98810 0.85707 1.67393 1.20451 1.12029 1.29243 1.19298 0.87972 0.87154 0.84961 1.86253 1.79854 1.41075 1.12857 1.22927 1.02348 0.94282 0.85842 1.42466 1.16723 1.65795 1.11329 1.19261 0.91880 1.27360 0.97893 0.90888 1.24712 0.97971 1.01721 0.96449 1.69683 1.35017 1.49150 1.03870 0.86212 0.84282 0.78844 0.77441 1.20566 1.22059 1.21972 0.94915 0.94144 0.89713 0.92515 0.93817 0.91784 0.91782 0.75399 0.91740 0.92315 0.87327 0.83551 0.81769 0.91941 0.88394 0.92105 0.78023 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C -0.13 -2.37 5.61 -26.73 -0.15 -2.52 16 3 C 0.16 3.15 2.59 -67.93 -0.18 2.97 16 4 H 0.05 1.04 8.08 -51.92 -0.42 0.62 16 5 C 0.12 2.13 5.23 -4.04 -0.02 2.11 16 6 N -0.70 -13.28 5.38 -61.45 -0.33 -13.61 16 7 C 0.59 11.56 6.42 -12.61 -0.08 11.48 16 8 O -0.55 -12.24 17.11 5.25 0.09 -12.15 16 9 C -0.23 -4.03 5.66 -104.57 -0.59 -4.62 16 10 C 0.24 3.70 6.74 -38.32 -0.26 3.44 16 11 O -0.29 -4.63 10.03 -18.22 -0.18 -4.81 16 12 C 0.03 0.29 9.84 101.05 0.99 1.28 16 13 C -0.30 -3.49 9.09 -39.35 -0.36 -3.85 16 14 C 0.19 2.06 11.15 -17.56 -0.20 1.86 16 15 N -0.56 -7.66 9.20 -13.06 -0.12 -7.78 16 16 C 0.39 6.10 7.51 -16.63 -0.12 5.98 16 17 O -0.29 -4.50 9.93 -17.98 -0.18 -4.68 16 18 C 0.04 0.44 10.38 101.05 1.05 1.48 16 19 N -0.72 -16.85 4.51 -53.42 -0.24 -17.09 16 20 C -0.23 -5.99 7.75 -15.06 -0.12 -6.10 16 21 H 0.07 1.84 7.32 -52.49 -0.38 1.46 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 24 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.81 5.99 -51.93 -0.31 1.50 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.41 8.02 8.12 -40.82 -0.33 7.69 16 36 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 37 H 0.06 0.47 7.70 -51.93 -0.40 0.07 16 38 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.15 1.22 6.45 -52.49 -0.34 0.89 16 40 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -33.00 379.64 -6.01 -39.01 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -6.69 Total: 14.07 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 0.21 Total: 10.77 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 0.03 Total: -64.54 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.27 Total: -21.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.00 -6.01 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698606910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds