Wall clock time and date at job start Tue Mar 31 2020 13:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09008 * 109.46793 * 54.99972 * 3 2 1 5 5 C 1.53000 * 109.46776 * 174.99584 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21626 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.47226 * 120.00001 * 180.02562 * 7 6 5 10 10 C 1.40662 * 120.65693 * 270.00255 * 9 7 6 11 11 O 1.35509 * 120.89277 * 359.97438 * 10 9 7 12 12 C 1.42898 * 116.99796 * 179.97438 * 11 10 9 13 13 C 1.39161 * 118.20624 * 180.02562 * 10 9 7 14 14 C 1.37945 * 119.39031 * 359.97438 * 13 10 9 15 15 N 1.32055 * 121.28729 * 0.02562 * 14 13 10 16 16 C 1.32209 * 121.97763 * 359.69828 * 15 14 13 17 17 O 1.35431 * 119.77795 * 180.30865 * 16 15 14 18 18 C 1.42896 * 116.99781 * 0.27753 * 17 16 15 19 19 N 1.46496 * 109.47348 * 294.99912 * 3 2 1 20 20 C 1.36941 * 120.00198 * 84.99697 * 19 3 2 21 21 H 1.07996 * 119.99379 * 0.02562 * 20 19 3 22 22 C 1.38810 * 119.99828 * 180.02562 * 20 19 3 23 23 N 1.31617 * 120.00148 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99611 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47407 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47025 * 120.00299 * 24 22 20 27 27 H 1.48504 * 109.47341 * 239.99944 * 24 22 20 28 28 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47547 * 300.00062 * 1 2 3 30 30 H 1.09005 * 109.47093 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47094 * 239.99657 * 2 1 3 32 32 H 1.09004 * 109.46831 * 119.99499 * 2 1 3 33 33 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 34 34 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 36 36 H 1.08996 * 109.47549 * 300.00183 * 12 11 10 37 37 H 1.09001 * 109.46762 * 59.99927 * 12 11 10 38 38 H 1.09001 * 109.47112 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.30993 * 180.02562 * 13 10 9 40 40 H 1.07996 * 119.36029 * 179.97438 * 14 13 10 41 41 H 1.09000 * 109.47610 * 59.99570 * 18 17 16 42 42 H 1.09006 * 109.46699 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.47091 * 299.99430 * 18 17 16 44 44 H 0.97002 * 119.99429 * 265.00252 * 19 3 2 45 45 H 0.97004 * 120.00027 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0860 8 8 6.1657 2.1456 0.2571 9 6 5.8864 4.4422 -0.0339 10 6 6.2286 4.9744 -1.2902 11 8 6.1064 4.2318 -2.4170 12 6 6.4771 4.8553 -3.6482 13 6 6.6971 6.2837 -1.3443 14 6 6.8096 7.0112 -0.1778 15 7 6.4819 6.4895 0.9902 16 6 6.0264 5.2534 1.1018 17 8 5.6977 4.7652 2.3216 18 6 5.8630 5.6424 3.4374 19 7 1.6524 2.0975 -1.2518 20 6 0.4156 2.6735 -1.3688 21 1 -0.2740 2.6452 -0.5382 22 6 0.0482 3.2936 -2.5551 23 7 0.8885 3.3276 -3.5676 24 14 -1.6387 4.0799 -2.7145 25 1 -2.3876 3.9068 -1.4440 26 1 -1.4844 5.5282 -3.0042 27 1 -2.3849 3.4304 -3.8220 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8498 1.0377 1.0962 34 1 3.9954 0.8311 -0.6658 35 1 3.4410 3.5484 -0.1308 36 1 5.8573 5.7372 -3.8100 37 1 7.5253 5.1511 -3.6045 38 1 6.3320 4.1532 -4.4692 39 1 6.9693 6.7264 -2.2911 40 1 7.1737 8.0271 -0.2204 41 1 5.2421 6.5275 3.2990 42 1 5.5641 5.1285 4.3510 43 1 6.9087 5.9405 3.5134 44 1 2.2720 2.1231 -1.9977 45 1 0.6317 3.7607 -4.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698606910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:25 Heat of formation + Delta-G solvation = -88.859672 kcal Electronic energy + Delta-G solvation = -28272.641560 eV Core-core repulsion = 24290.560722 eV Total energy + Delta-G solvation = -3982.080838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17776 -40.30797 -40.24456 -38.35468 -38.23625 -35.23054 -34.16612 -33.04677 -31.83945 -31.47424 -29.45973 -28.90462 -27.77923 -26.11392 -25.20042 -23.81151 -23.56573 -21.79032 -21.41696 -20.02644 -19.34304 -18.77013 -18.51920 -17.62243 -17.50222 -16.96297 -16.84074 -16.65053 -16.17594 -16.00265 -15.76793 -15.45997 -15.14035 -14.85061 -14.70991 -14.55014 -14.26566 -14.16443 -13.82163 -13.66130 -12.99248 -12.81956 -12.79908 -12.77566 -12.62868 -12.47373 -12.36353 -12.15602 -12.07669 -11.87704 -11.64523 -11.42878 -11.32161 -10.92248 -10.68918 -10.06938 -10.05557 -9.71156 -8.96576 -7.86177 -5.13454 -0.15303 0.17634 1.48416 1.49983 1.50649 1.58389 1.62811 2.21271 2.43422 2.58930 2.60436 3.30580 3.46756 3.58439 3.79380 3.88833 3.93825 3.95880 4.18809 4.28024 4.35198 4.37149 4.39656 4.44116 4.47498 4.55413 4.58292 4.70437 4.73603 4.75564 4.87329 4.89852 5.08570 5.11769 5.13702 5.21000 5.45181 5.56565 5.61829 5.72986 6.06185 6.11472 6.33632 6.50063 6.69962 7.15138 7.41183 8.12179 8.38376 9.36965 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.004290 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.133447 B = 6525.943575 C = 7384.403443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.057 0.943 5 C 0.122 3.878 6 N -0.696 5.696 7 C 0.587 3.413 8 O -0.583 6.583 9 C -0.272 4.272 10 C 0.223 3.777 11 O -0.327 6.327 12 C 0.017 3.983 13 C -0.290 4.290 14 C 0.194 3.806 15 N -0.565 5.565 16 C 0.377 3.623 17 O -0.319 6.319 18 C 0.036 3.964 19 N -0.727 5.727 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.959 3.041 25 H -0.267 1.267 26 H -0.298 1.298 27 H -0.300 1.300 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.184 0.816 40 H 0.214 0.786 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.223 8.173 7.595 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.057 3.943 4 H 0.075 0.925 5 C -0.002 4.002 6 N -0.345 5.345 7 C 0.373 3.627 8 O -0.464 6.464 9 C -0.279 4.279 10 C 0.168 3.832 11 O -0.238 6.238 12 C -0.076 4.076 13 C -0.311 4.311 14 C 0.040 3.960 15 N -0.293 5.293 16 C 0.198 3.802 17 O -0.225 6.225 18 C -0.058 4.058 19 N -0.367 5.367 20 C -0.347 4.347 21 H 0.097 0.903 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.226 1.226 27 H -0.228 1.228 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.242 0.758 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.201 0.799 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.464 7.562 8.576 16.914 hybrid contribution -1.028 0.343 -1.660 1.983 sum 11.436 7.905 6.915 15.527 Atomic orbital electron populations 1.21687 0.95737 1.00658 1.01802 1.21976 0.96791 0.97035 1.01091 1.20701 0.90453 0.93552 0.89566 0.92470 1.21635 0.94762 0.82434 1.01391 1.45915 1.06644 1.10680 1.71269 1.17771 0.82282 0.87721 0.74970 1.90698 1.57060 1.46855 1.51749 1.19023 1.19689 0.97178 0.92049 1.19183 0.88587 0.90415 0.85017 1.86087 1.80518 1.41981 1.15172 1.23538 1.01880 1.00533 0.81686 1.22376 1.11768 0.93184 1.03759 1.23110 0.87921 1.00387 0.84592 1.67529 1.20528 1.10803 1.30474 1.19384 0.88280 0.87735 0.84780 1.86214 1.79941 1.42757 1.13636 1.23192 1.03006 0.94349 0.85226 1.42569 1.15828 1.66111 1.12222 1.19536 0.92324 1.25341 0.97510 0.90262 1.25366 1.00979 1.03480 0.96649 1.69829 1.36662 1.51011 1.04230 0.85279 0.80938 0.77403 0.77422 1.19150 1.22618 1.22805 0.92701 0.93226 0.93231 0.93537 0.90642 0.90252 0.93104 0.75795 0.90620 0.89387 0.87135 0.79929 0.76911 0.91469 0.86210 0.91436 0.79619 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.18 71.98 0.66 -4.24 16 2 C -0.13 -4.39 5.61 30.59 0.17 -4.22 16 3 C 0.17 6.35 2.59 44.99 0.12 6.46 16 4 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 5 C 0.12 4.55 5.23 86.38 0.45 5.00 16 6 N -0.70 -27.33 5.38 -466.56 -2.51 -29.84 16 7 C 0.59 24.05 6.42 86.60 0.56 24.61 16 8 O -0.58 -27.22 17.11 -4.11 -0.07 -27.29 16 9 C -0.27 -9.69 5.66 -19.83 -0.11 -9.80 16 10 C 0.22 6.86 6.74 23.08 0.16 7.02 16 11 O -0.33 -10.60 10.03 -88.11 -0.88 -11.49 16 12 C 0.02 0.35 9.84 113.37 1.12 1.46 16 13 C -0.29 -6.02 9.09 22.42 0.20 -5.82 16 14 C 0.19 3.67 11.15 84.59 0.94 4.61 16 15 N -0.57 -14.36 9.20 -308.25 -2.84 -17.20 16 16 C 0.38 11.90 7.51 85.13 0.64 12.54 16 17 O -0.32 -9.77 9.93 -87.26 -0.87 -10.64 16 18 C 0.04 0.73 10.38 113.37 1.18 1.91 16 19 N -0.73 -34.41 4.51 -322.94 -1.46 -35.87 16 20 C -0.22 -11.08 7.75 84.03 0.65 -10.43 16 21 H 0.08 3.94 7.32 -2.91 -0.02 3.92 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 23 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 24 Si 0.96 44.83 29.55 68.60 2.03 46.86 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.07 5.99 -2.38 -0.01 2.06 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.41 16.46 8.12 -92.71 -0.75 15.71 16 36 H 0.08 1.34 7.71 -2.39 -0.02 1.32 16 37 H 0.09 1.23 7.70 -2.39 -0.02 1.21 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.18 2.32 6.45 -2.91 -0.02 2.31 16 40 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 42 H 0.12 1.80 8.14 -2.38 -0.02 1.79 16 43 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 44 H 0.37 19.70 7.80 -92.71 -0.72 18.97 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -74.01 379.64 0.43 -73.58 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: -0.45 Total: 43.01 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 7.20 Total: 25.58 kcal Atomic # 7 Polarization: -133.10 SS G_CDS: -6.52 Total: -139.62 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.82 Total: -49.42 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -74.01 0.43 -73.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698606910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.275 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds