Wall clock time and date at job start Tue Mar 31 2020 13:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21616 * 120.00359 * 0.02562 * 7 6 5 9 9 C 1.47231 * 119.99366 * 180.02562 * 7 6 5 10 10 C 1.40666 * 120.64938 * 269.99749 * 9 7 6 11 11 O 1.35504 * 120.89966 * 359.97438 * 10 9 7 12 12 C 1.42897 * 116.99930 * 180.02562 * 11 10 9 13 13 C 1.39171 * 118.19791 * 180.02562 * 10 9 7 14 14 C 1.37942 * 119.39262 * 359.97438 * 13 10 9 15 15 N 1.32048 * 121.28520 * 0.02562 * 14 13 10 16 16 C 1.32215 * 121.98273 * 359.69780 * 15 14 13 17 17 O 1.35429 * 119.77774 * 180.29632 * 16 15 14 18 18 C 1.42894 * 117.00346 * 0.28829 * 17 16 15 19 19 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 20 20 C 1.36941 * 120.00214 * 275.00186 * 19 3 2 21 21 H 1.07995 * 119.99909 * 0.02562 * 20 19 3 22 22 C 1.38812 * 119.99753 * 179.97438 * 20 19 3 23 23 N 1.31619 * 120.00401 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99499 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46951 * 120.00018 * 24 22 20 27 27 H 1.48502 * 109.46728 * 239.99948 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 34 34 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 35 35 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.46793 * 299.99385 * 12 11 10 37 37 H 1.09003 * 109.47730 * 59.99566 * 12 11 10 38 38 H 1.08999 * 109.47143 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.30403 * 180.02562 * 13 10 9 40 40 H 1.07991 * 119.35626 * 179.97438 * 14 13 10 41 41 H 1.09004 * 109.47046 * 60.00271 * 18 17 16 42 42 H 1.08998 * 109.47644 * 179.97438 * 18 17 16 43 43 H 1.08999 * 109.47301 * 300.00827 * 18 17 16 44 44 H 0.97001 * 119.99703 * 95.00546 * 19 3 2 45 45 H 0.96996 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1658 2.1456 -0.2577 9 6 5.8866 4.4420 0.0351 10 6 6.0320 5.2545 -1.1039 11 8 5.7160 4.7882 -2.3363 12 6 5.8964 5.6840 -3.4349 13 6 6.5102 6.5500 -0.9309 14 6 6.8228 6.9925 0.3377 15 7 6.6776 6.2106 1.3918 16 6 6.2228 4.9734 1.2887 17 8 6.0859 4.2123 2.4005 18 6 6.4452 4.8130 3.6463 19 7 1.6525 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2742 2.6445 0.5385 22 6 0.0483 3.2936 2.5552 23 7 0.8889 3.3284 3.5674 24 14 -1.6392 4.0788 2.7150 25 1 -2.3888 3.9037 1.4451 26 1 -2.3846 3.4289 3.8228 27 1 -1.4857 5.5272 3.0043 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9955 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4412 3.5482 0.1315 36 1 5.2758 6.5681 -3.2883 37 1 6.9436 5.9809 -3.4936 38 1 5.6077 5.1864 -4.3607 39 1 6.6347 7.2032 -1.7819 40 1 7.1942 7.9977 0.4712 41 1 5.8265 5.6941 3.8166 42 1 6.2879 4.0976 4.4535 43 1 7.4948 5.1058 3.6192 44 1 2.2720 2.1231 1.9978 45 1 0.6323 3.7620 4.3962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698606911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:29 Heat of formation + Delta-G solvation = -62.209626 kcal Electronic energy + Delta-G solvation = -28273.959133 eV Core-core repulsion = 24293.033928 eV Total energy + Delta-G solvation = -3980.925205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09439 -39.22112 -38.81781 -37.30462 -36.56804 -33.54343 -32.38457 -31.90116 -30.83415 -29.67915 -28.09807 -27.83758 -26.81984 -24.73688 -23.45718 -22.56069 -22.34187 -20.29775 -19.88329 -18.96958 -17.75338 -17.59536 -16.93242 -16.54675 -16.34925 -15.71067 -15.43153 -15.26435 -15.15436 -14.68961 -14.22770 -13.95313 -13.79145 -13.51478 -13.32563 -13.19666 -13.03699 -12.80619 -12.47609 -12.01798 -11.86741 -11.85080 -11.59190 -11.37460 -11.11485 -10.93919 -10.87127 -10.70423 -10.39639 -10.15412 -10.14461 -9.95597 -9.50619 -9.40606 -9.05137 -8.91967 -8.62726 -8.48636 -6.98260 -5.77303 -3.06045 0.89140 1.20533 2.57834 2.98198 3.39318 3.40678 3.47042 3.48937 3.52068 3.74690 4.27333 4.49786 4.57096 4.80283 4.86949 4.88403 4.96994 5.21302 5.36975 5.39516 5.44395 5.49219 5.51269 5.58030 5.63726 5.73030 5.78947 5.97336 5.99006 6.01550 6.05293 6.24118 6.48882 6.61034 6.63496 6.66408 6.93395 6.99900 7.09238 7.21245 7.28137 7.70268 7.74202 8.05484 8.39878 8.67855 9.51855 10.08082 10.44266 11.44534 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.004292 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.126689 B = 6521.634312 C = 7378.723778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.116 3.884 6 N -0.698 5.698 7 C 0.586 3.414 8 O -0.545 6.545 9 C -0.232 4.232 10 C 0.232 3.768 11 O -0.298 6.298 12 C 0.026 3.974 13 C -0.304 4.304 14 C 0.189 3.811 15 N -0.561 5.561 16 C 0.393 3.607 17 O -0.287 6.287 18 C 0.043 3.957 19 N -0.721 5.721 20 C -0.234 4.234 21 H 0.073 0.927 22 C -0.012 4.012 23 N -0.927 5.927 24 Si 0.900 3.100 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.386 0.614 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.690 7.099 -10.013 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.348 5.348 7 C 0.369 3.631 8 O -0.423 6.423 9 C -0.239 4.239 10 C 0.178 3.822 11 O -0.208 6.208 12 C -0.069 4.069 13 C -0.326 4.326 14 C 0.033 3.967 15 N -0.288 5.288 16 C 0.214 3.786 17 O -0.192 6.192 18 C -0.052 4.052 19 N -0.363 5.363 20 C -0.366 4.366 21 H 0.091 0.909 22 C -0.208 4.208 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.220 0.780 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.075 6.307 -9.378 16.538 hybrid contribution -1.145 0.995 -0.242 1.536 sum 10.930 7.302 -9.620 16.289 Atomic orbital electron populations 1.21767 0.95778 0.99560 1.03206 1.22061 0.96890 0.98422 1.00037 1.20560 0.89963 0.92776 0.91399 0.92913 1.21689 0.95541 0.82555 1.01105 1.45889 1.06616 1.10748 1.71542 1.17350 0.82654 0.86773 0.76278 1.90744 1.56355 1.45290 1.49921 1.18964 1.16859 0.97891 0.90159 1.18820 0.88539 0.90528 0.84359 1.86084 1.80198 1.41583 1.12907 1.23213 1.01746 0.94372 0.87581 1.21922 1.13581 0.96438 1.00653 1.22250 0.90131 0.97968 0.86374 1.67438 1.22060 1.04683 1.34663 1.19378 0.87197 0.86427 0.85621 1.86303 1.79907 1.38868 1.14124 1.22952 1.00591 0.99776 0.81918 1.42469 1.16741 1.65789 1.11324 1.19247 0.91880 1.27523 0.97904 0.90916 1.24721 0.97936 1.01691 0.96452 1.69679 1.34985 1.48983 1.03912 0.86220 0.84303 0.78867 0.77422 1.20594 1.21963 1.22042 0.94177 0.89686 0.94921 0.92492 0.93851 0.91735 0.91838 0.75399 0.91923 0.92112 0.87617 0.83703 0.81790 0.91754 0.88094 0.92303 0.77985 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C -0.13 -2.37 5.61 -26.74 -0.15 -2.52 16 3 C 0.16 3.16 2.59 -67.93 -0.18 2.98 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.12 2.13 5.23 -4.04 -0.02 2.11 16 6 N -0.70 -13.29 5.39 -61.44 -0.33 -13.62 16 7 C 0.59 11.57 6.42 -12.61 -0.08 11.49 16 8 O -0.55 -12.24 17.11 5.26 0.09 -12.15 16 9 C -0.23 -4.04 5.66 -104.57 -0.59 -4.63 16 10 C 0.23 3.32 6.74 -38.32 -0.26 3.06 16 11 O -0.30 -3.99 10.03 -18.21 -0.18 -4.17 16 12 C 0.03 0.20 9.84 101.05 0.99 1.19 16 13 C -0.30 -3.29 9.09 -39.34 -0.36 -3.65 16 14 C 0.19 2.09 11.15 -17.57 -0.20 1.90 16 15 N -0.56 -8.13 9.20 -13.06 -0.12 -8.25 16 16 C 0.39 6.70 7.51 -16.63 -0.12 6.57 16 17 O -0.29 -5.12 9.93 -17.98 -0.18 -5.30 16 18 C 0.04 0.58 10.38 101.05 1.05 1.63 16 19 N -0.72 -16.95 4.51 -53.43 -0.24 -17.19 16 20 C -0.23 -6.05 7.75 -15.06 -0.12 -6.17 16 21 H 0.07 1.84 7.32 -52.49 -0.38 1.46 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 24 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.82 5.99 -51.93 -0.31 1.51 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.41 8.02 8.12 -40.82 -0.33 7.69 16 36 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 37 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.15 1.03 6.45 -52.49 -0.34 0.69 16 40 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.39 10.00 7.80 -40.82 -0.32 9.68 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -33.33 379.64 -6.01 -39.34 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -6.69 Total: 13.96 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 0.21 Total: 11.22 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.03 Total: -65.36 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.27 Total: -21.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.33 -6.01 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698606911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds