Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21616 * 120.00359 * 0.02562 * 7 6 5 9 9 C 1.47231 * 119.99366 * 180.02562 * 7 6 5 10 10 C 1.40666 * 120.64938 * 269.99749 * 9 7 6 11 11 O 1.35504 * 120.89966 * 359.97438 * 10 9 7 12 12 C 1.42897 * 116.99930 * 180.02562 * 11 10 9 13 13 C 1.39171 * 118.19791 * 180.02562 * 10 9 7 14 14 C 1.37942 * 119.39262 * 359.97438 * 13 10 9 15 15 N 1.32048 * 121.28520 * 0.02562 * 14 13 10 16 16 C 1.32215 * 121.98273 * 359.69780 * 15 14 13 17 17 O 1.35429 * 119.77774 * 180.29632 * 16 15 14 18 18 C 1.42894 * 117.00346 * 0.28829 * 17 16 15 19 19 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 20 20 C 1.36941 * 120.00214 * 275.00186 * 19 3 2 21 21 H 1.07995 * 119.99909 * 0.02562 * 20 19 3 22 22 C 1.38812 * 119.99753 * 179.97438 * 20 19 3 23 23 N 1.31619 * 120.00401 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99499 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46951 * 120.00018 * 24 22 20 27 27 H 1.48502 * 109.46728 * 239.99948 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 34 34 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 35 35 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.46793 * 299.99385 * 12 11 10 37 37 H 1.09003 * 109.47730 * 59.99566 * 12 11 10 38 38 H 1.08999 * 109.47143 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.30403 * 180.02562 * 13 10 9 40 40 H 1.07991 * 119.35626 * 179.97438 * 14 13 10 41 41 H 1.09004 * 109.47046 * 60.00271 * 18 17 16 42 42 H 1.08998 * 109.47644 * 179.97438 * 18 17 16 43 43 H 1.08999 * 109.47301 * 300.00827 * 18 17 16 44 44 H 0.97001 * 119.99703 * 95.00546 * 19 3 2 45 45 H 0.96996 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1658 2.1456 -0.2577 9 6 5.8866 4.4420 0.0351 10 6 6.0320 5.2545 -1.1039 11 8 5.7160 4.7882 -2.3363 12 6 5.8964 5.6840 -3.4349 13 6 6.5102 6.5500 -0.9309 14 6 6.8228 6.9925 0.3377 15 7 6.6776 6.2106 1.3918 16 6 6.2228 4.9734 1.2887 17 8 6.0859 4.2123 2.4005 18 6 6.4452 4.8130 3.6463 19 7 1.6525 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2742 2.6445 0.5385 22 6 0.0483 3.2936 2.5552 23 7 0.8889 3.3284 3.5674 24 14 -1.6392 4.0788 2.7150 25 1 -2.3888 3.9037 1.4451 26 1 -2.3846 3.4289 3.8228 27 1 -1.4857 5.5272 3.0043 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9955 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4412 3.5482 0.1315 36 1 5.2758 6.5681 -3.2883 37 1 6.9436 5.9809 -3.4936 38 1 5.6077 5.1864 -4.3607 39 1 6.6347 7.2032 -1.7819 40 1 7.1942 7.9977 0.4712 41 1 5.8265 5.6941 3.8166 42 1 6.2879 4.0976 4.4535 43 1 7.4948 5.1058 3.6192 44 1 2.2720 2.1231 1.9978 45 1 0.6323 3.7620 4.3962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698606911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = -88.878796 kcal Electronic energy + Delta-G solvation = -28275.115595 eV Core-core repulsion = 24293.033928 eV Total energy + Delta-G solvation = -3982.081667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17597 -40.30913 -40.23896 -38.35692 -38.23529 -35.22958 -34.16527 -33.04721 -31.83171 -31.47334 -29.45911 -28.89580 -27.78323 -26.11193 -25.19774 -23.81153 -23.56459 -21.78749 -21.41536 -20.02141 -19.32833 -18.80821 -18.48949 -17.61836 -17.50796 -16.95119 -16.82761 -16.64462 -16.16295 -16.06192 -15.75685 -15.40169 -15.17794 -14.83456 -14.71165 -14.56732 -14.26870 -14.10174 -13.90651 -13.62037 -12.99089 -12.83038 -12.80580 -12.77626 -12.61342 -12.46631 -12.35369 -12.16932 -12.07584 -11.87479 -11.64348 -11.41256 -11.31723 -10.91969 -10.67769 -10.07242 -10.05676 -9.70025 -8.96672 -7.85869 -5.13485 -0.14496 0.18217 1.48407 1.49736 1.50345 1.58381 1.63337 2.22044 2.44239 2.59282 2.60665 3.29911 3.47078 3.59495 3.79486 3.88315 3.95127 3.96232 4.19693 4.33029 4.35970 4.37518 4.39344 4.40330 4.47591 4.55636 4.57604 4.70131 4.73531 4.76179 4.87275 4.88076 5.08755 5.12613 5.13668 5.21221 5.45236 5.56830 5.61743 5.73343 6.06686 6.12579 6.33504 6.50181 6.72768 7.15205 7.40976 8.12515 8.38224 9.37249 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.004292 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.126689 B = 6521.634312 C = 7378.723778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.696 5.696 7 C 0.587 3.413 8 O -0.583 6.583 9 C -0.272 4.272 10 C 0.228 3.772 11 O -0.325 6.325 12 C 0.013 3.987 13 C -0.286 4.286 14 C 0.191 3.809 15 N -0.570 5.570 16 C 0.373 3.627 17 O -0.322 6.322 18 C 0.041 3.959 19 N -0.728 5.728 20 C -0.215 4.215 21 H 0.081 0.919 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.301 1.301 27 H -0.299 1.299 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.190 0.810 40 H 0.213 0.787 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 8.740 -12.493 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.058 3.942 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.345 5.345 7 C 0.373 3.627 8 O -0.464 6.464 9 C -0.279 4.279 10 C 0.173 3.827 11 O -0.235 6.235 12 C -0.080 4.080 13 C -0.307 4.307 14 C 0.036 3.964 15 N -0.299 5.299 16 C 0.194 3.806 17 O -0.228 6.228 18 C -0.053 4.053 19 N -0.368 5.368 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.229 1.229 27 H -0.227 1.227 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.242 0.758 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.207 0.793 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.092 0.908 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.162 7.945 -11.927 18.796 hybrid contribution -1.119 0.506 0.361 1.279 sum 11.044 8.450 -11.566 18.087 Atomic orbital electron populations 1.21687 0.95720 1.00655 1.01815 1.21975 0.96805 0.97050 1.01079 1.20702 0.90439 0.93544 0.89550 0.92345 1.21639 0.94779 0.82429 1.01389 1.45917 1.06648 1.10687 1.71256 1.17770 0.82274 0.87741 0.74964 1.90695 1.57051 1.46849 1.51764 1.19024 1.19678 0.97305 0.91938 1.19015 0.88384 0.91318 0.84015 1.86055 1.80097 1.43839 1.13528 1.23620 1.03615 0.94573 0.86230 1.22376 1.11084 0.95181 1.02065 1.23154 0.88345 0.99160 0.85740 1.67517 1.22336 1.03826 1.36187 1.19523 0.88389 0.87433 0.85210 1.86239 1.80608 1.40525 1.15467 1.23095 1.01399 0.99839 0.80986 1.42590 1.15845 1.66115 1.12257 1.19541 0.92304 1.25324 0.97502 0.90124 1.25396 1.01020 1.03534 0.96663 1.69834 1.36728 1.50963 1.04292 0.85269 0.80891 0.77343 0.77486 1.18934 1.22856 1.22709 0.93157 0.93264 0.92716 0.93624 0.90590 0.93223 0.90145 0.75799 0.90059 0.90036 0.86221 0.79254 0.77063 0.92007 0.87208 0.90796 0.79683 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.18 71.98 0.66 -4.23 16 2 C -0.13 -4.40 5.61 30.59 0.17 -4.23 16 3 C 0.17 6.35 2.59 44.99 0.12 6.47 16 4 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 5 C 0.12 4.55 5.23 86.38 0.45 5.00 16 6 N -0.70 -27.34 5.39 -466.56 -2.51 -29.85 16 7 C 0.59 24.07 6.42 86.61 0.56 24.62 16 8 O -0.58 -27.24 17.11 -4.08 -0.07 -27.31 16 9 C -0.27 -9.70 5.66 -19.83 -0.11 -9.81 16 10 C 0.23 6.24 6.74 23.09 0.16 6.39 16 11 O -0.32 -8.25 10.03 -88.06 -0.88 -9.14 16 12 C 0.01 0.16 9.84 113.37 1.12 1.27 16 13 C -0.29 -5.23 9.09 22.42 0.20 -5.02 16 14 C 0.19 3.64 11.15 84.59 0.94 4.58 16 15 N -0.57 -15.99 9.20 -308.27 -2.84 -18.83 16 16 C 0.37 13.03 7.51 85.12 0.64 13.67 16 17 O -0.32 -12.11 9.93 -87.24 -0.87 -12.98 16 18 C 0.04 1.16 10.38 113.37 1.18 2.33 16 19 N -0.73 -34.73 4.51 -322.95 -1.46 -36.18 16 20 C -0.21 -11.12 7.75 84.03 0.65 -10.47 16 21 H 0.08 4.00 7.32 -2.91 -0.02 3.98 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 23 N -0.97 -58.08 13.06 21.65 0.28 -57.80 16 24 Si 0.96 45.22 29.55 68.60 2.03 47.24 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 2.06 5.99 -2.39 -0.01 2.05 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.41 16.46 8.12 -92.71 -0.75 15.71 16 36 H 0.08 0.70 7.71 -2.39 -0.02 0.69 16 37 H 0.08 0.67 7.71 -2.39 -0.02 0.65 16 38 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.19 1.65 6.45 -2.91 -0.02 1.63 16 40 H 0.21 1.89 8.06 -2.92 -0.02 1.86 16 41 H 0.06 1.72 8.11 -2.39 -0.02 1.70 16 42 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 44 H 0.37 19.95 7.80 -92.71 -0.72 19.23 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -75.86 379.64 0.43 -75.43 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -0.45 Total: 42.47 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 7.20 Total: 26.94 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -6.52 Total: -142.65 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.82 Total: -49.42 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.86 0.43 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698606911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.453 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds