Wall clock time and date at job start Tue Mar 31 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 O 1.42895 * 109.47161 * 239.99808 * 2 1 3 5 5 C 1.35726 * 117.00304 * 274.74561 * 4 2 1 6 6 C 1.39232 * 120.37911 * 5.36751 * 5 4 2 7 7 C 1.38324 * 118.44307 * 180.02562 * 6 5 4 8 8 C 1.39459 * 119.13232 * 0.02562 * 7 6 5 9 9 C 1.47932 * 119.65874 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99284 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00415 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00159 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47219 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47261 * 59.99835 * 13 12 11 15 15 O 1.42902 * 109.46980 * 299.99677 * 13 12 11 16 16 C 1.53001 * 109.46888 * 179.97438 * 13 12 11 17 17 N 1.46503 * 109.46767 * 185.00069 * 16 13 12 18 18 C 1.36939 * 119.99920 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00030 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00088 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00251 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46825 * 90.00633 * 22 20 18 24 24 H 1.48501 * 109.47207 * 210.00113 * 22 20 18 25 25 H 1.48492 * 109.47278 * 330.00429 * 22 20 18 26 26 N 1.32798 * 120.68739 * 359.97438 * 8 7 6 27 27 C 1.31380 * 121.69310 * 359.70486 * 26 8 7 28 28 H 1.09003 * 109.47391 * 60.00084 * 1 2 3 29 29 H 1.09007 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47330 * 300.00284 * 1 2 3 31 31 H 1.09001 * 109.46881 * 119.99833 * 2 1 3 32 32 H 1.09004 * 109.46995 * 60.00188 * 3 2 1 33 33 H 1.09003 * 109.47120 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47078 * 299.99712 * 3 2 1 35 35 H 1.07998 * 120.77996 * 0.02639 * 6 5 4 36 36 H 1.08000 * 120.42829 * 180.02562 * 7 6 5 37 37 H 0.97000 * 119.99865 * 359.97438 * 11 9 8 38 38 H 1.09008 * 109.47291 * 299.99727 * 12 11 9 39 39 H 1.09004 * 109.47389 * 60.00009 * 12 11 9 40 40 H 0.96694 * 114.00028 * 299.99762 * 15 13 12 41 41 H 1.08997 * 109.47329 * 304.99397 * 16 13 12 42 42 H 1.08994 * 109.47472 * 65.00129 * 16 13 12 43 43 H 0.96998 * 120.00317 * 359.97438 * 17 16 13 44 44 H 0.96998 * 120.00177 * 179.97438 * 21 20 18 45 45 H 1.08004 * 119.59510 * 180.31080 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1174 -2.0245 -1.0961 6 6 1.6719 -2.7097 0.0311 7 6 1.8051 -4.0862 0.0608 8 6 2.3778 -4.7366 -1.0319 9 6 2.5265 -6.2083 -1.0123 10 8 2.1507 -6.8441 -0.0469 11 7 3.0794 -6.8439 -2.0642 12 6 3.2261 -8.3014 -2.0449 13 6 3.8766 -8.7658 -3.3496 14 1 4.8583 -8.3031 -3.4509 15 8 3.0539 -8.3844 -4.4541 16 6 4.0303 -10.2879 -3.3291 17 7 4.7598 -10.7211 -4.5235 18 6 5.0179 -12.0510 -4.7233 19 1 4.6833 -12.7806 -4.0007 20 6 5.7096 -12.4614 -5.8547 21 7 5.9573 -13.7397 -6.0471 22 14 6.2877 -11.1996 -7.1050 23 1 7.6509 -10.7340 -6.7442 24 1 6.3169 -11.8176 -8.4549 25 1 5.3550 -10.0441 -7.1096 26 7 2.7911 -4.0485 -2.0899 27 6 2.6734 -2.7415 -2.1522 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.2326 -2.1790 0.8628 36 1 1.4700 -4.6498 0.9189 37 1 3.3796 -6.3364 -2.8344 38 1 3.8532 -8.5924 -1.2022 39 1 2.2443 -8.7641 -1.9441 40 1 2.1635 -8.7606 -4.4296 41 1 4.5830 -10.5854 -2.4381 42 1 3.0444 -10.7526 -3.3172 43 1 5.0594 -10.0660 -5.1731 44 1 6.4403 -14.0265 -6.8379 45 1 3.0165 -2.2164 -3.0314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699077647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:05 Heat of formation + Delta-G solvation = -77.246002 kcal Electronic energy + Delta-G solvation = -26129.993201 eV Core-core repulsion = 22148.415969 eV Total energy + Delta-G solvation = -3981.577232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35993 -39.93009 -38.65579 -37.64017 -34.54674 -34.12644 -33.96473 -32.73144 -31.50626 -30.95433 -29.29921 -27.96652 -26.02605 -24.82057 -23.89774 -22.37454 -21.89249 -21.46505 -20.59087 -19.03556 -18.29500 -17.68664 -17.40521 -16.24418 -16.23345 -16.02193 -15.82506 -15.24078 -15.03395 -14.95055 -14.59799 -14.45891 -14.09401 -13.85775 -13.70998 -13.47333 -13.21895 -13.11439 -12.93903 -12.88069 -12.60876 -12.49179 -12.36208 -11.96054 -11.64945 -11.44033 -11.28110 -10.84267 -10.78471 -10.52163 -10.31907 -10.14735 -10.02872 -9.70532 -9.52890 -9.20462 -8.90936 -8.86021 -7.23400 -5.75550 -3.11641 0.32414 0.70493 2.41438 2.51359 2.97427 3.42160 3.48658 3.49327 3.52092 3.86571 3.99138 4.12565 4.18109 4.29415 4.40726 4.54364 4.62206 4.63092 4.65414 4.75133 4.88959 5.00769 5.04340 5.10486 5.16814 5.29940 5.39513 5.44753 5.50152 5.51266 5.53299 5.53976 5.71576 5.79848 5.83687 5.89978 6.32407 6.44827 6.58345 6.64959 7.22292 7.52900 7.82942 8.00448 8.07853 8.42933 9.22582 9.94642 10.14367 11.42451 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001926 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.817252 B =14532.056341 C =15268.068974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.299 6.299 5 C 0.106 3.894 6 C -0.179 4.179 7 C -0.067 4.067 8 C 0.037 3.963 9 C 0.572 3.428 10 O -0.540 6.540 11 N -0.701 5.701 12 C 0.088 3.912 13 C 0.085 3.915 14 H 0.105 0.895 15 O -0.555 6.555 16 C 0.132 3.868 17 N -0.749 5.749 18 C -0.248 4.248 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.272 1.272 26 N -0.416 5.416 27 C 0.076 3.924 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.415 0.585 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.375 0.625 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.366 0.634 44 H 0.260 0.740 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 32.931 14.827 37.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 C -0.207 4.207 4 O -0.211 6.211 5 C 0.057 3.943 6 C -0.205 4.205 7 C -0.087 4.087 8 C -0.101 4.101 9 C 0.357 3.643 10 O -0.418 6.418 11 N -0.352 5.352 12 C -0.036 4.036 13 C 0.025 3.975 14 H 0.123 0.877 15 O -0.360 6.360 16 C 0.003 3.997 17 N -0.396 5.396 18 C -0.378 4.378 19 H 0.107 0.893 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.198 1.198 26 N -0.127 5.127 27 C -0.086 4.086 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.223 0.777 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.199 0.801 44 H 0.070 0.930 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.757 32.177 14.534 36.909 hybrid contribution -0.366 1.105 -0.177 1.177 sum -11.123 33.282 14.357 37.915 Atomic orbital electron populations 1.22407 0.94576 1.03332 1.03662 1.22587 0.94688 0.94019 0.87003 1.21870 1.02342 0.93027 1.03412 1.86131 1.80292 1.15487 1.39165 1.20448 0.94624 0.83958 0.95283 1.21751 1.04685 0.94989 0.99108 1.21951 0.94360 0.93705 0.98716 1.21043 1.02415 0.94498 0.92131 1.17718 0.78074 0.85525 0.82969 1.90796 1.50338 1.66711 1.33919 1.45746 1.61099 1.08203 1.20170 1.22148 1.02225 0.79656 0.99589 1.22455 0.94599 0.96331 0.84119 0.87685 1.86568 1.28240 1.74644 1.46525 1.21178 0.96498 0.90384 0.91621 1.42575 1.68139 1.05735 1.23105 1.19048 1.30163 0.82625 1.05928 0.89255 1.24667 1.00493 0.95724 0.98125 1.69706 1.45885 1.13312 1.29213 0.86541 0.78922 0.81523 0.81643 1.21100 1.21759 1.19797 1.67613 1.13118 1.07655 1.24342 1.22269 0.99635 0.88679 0.98054 0.91063 0.91767 0.90588 0.90604 0.90218 0.91409 0.91169 0.83508 0.83064 0.74761 0.90010 0.90657 0.77737 0.94411 0.95021 0.80081 0.93042 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 9.19 37.16 0.34 -0.32 16 2 C 0.07 0.32 2.85 -26.73 -0.08 0.24 16 3 C -0.15 -0.46 9.56 37.16 0.36 -0.11 16 4 O -0.30 -2.10 9.80 -18.89 -0.19 -2.28 16 5 C 0.11 0.84 6.63 -38.84 -0.26 0.58 16 6 C -0.18 -1.31 8.34 -39.18 -0.33 -1.64 16 7 C -0.07 -0.62 9.62 -39.09 -0.38 -1.00 16 8 C 0.04 0.42 6.74 -83.02 -0.56 -0.14 16 9 C 0.57 7.74 7.80 -12.29 -0.10 7.64 16 10 O -0.54 -8.62 16.31 5.32 0.09 -8.53 16 11 N -0.70 -8.88 5.44 -61.22 -0.33 -9.21 16 12 C 0.09 1.14 5.34 -4.04 -0.02 1.12 16 13 C 0.08 1.25 3.09 -26.73 -0.08 1.17 16 14 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 15 O -0.55 -8.38 13.03 -35.23 -0.46 -8.84 16 16 C 0.13 2.45 5.90 -4.04 -0.02 2.42 16 17 N -0.75 -17.95 5.35 -59.91 -0.32 -18.27 16 18 C -0.25 -7.11 10.47 -15.06 -0.16 -7.27 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.65 13.97 55.49 0.78 -28.88 16 22 Si 0.88 22.56 27.74 -169.99 -4.71 17.85 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.66 6.52 56.52 0.37 -6.29 16 26 N -0.42 -4.55 9.53 -9.68 -0.09 -4.64 16 27 C 0.08 0.68 11.14 -17.38 -0.19 0.48 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 6.97 -51.93 -0.36 -0.09 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 0.27 6.32 -51.93 -0.33 -0.05 16 32 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.15 0.69 5.59 -52.49 -0.29 0.39 16 36 H 0.15 1.31 7.63 -52.49 -0.40 0.91 16 37 H 0.42 5.08 7.67 -40.82 -0.31 4.77 16 38 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.38 4.65 9.05 45.56 0.41 5.06 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.37 8.75 5.53 -40.82 -0.23 8.52 16 44 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 45 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -35.40 378.67 -6.86 -42.26 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.75 Total: 11.58 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.57 Total: 3.27 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.03 Total: -61.00 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.56 Total: -19.65 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.40 -6.86 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699077647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.990 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds