Wall clock time and date at job start Tue Mar 31 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 O 1.42895 * 109.47161 * 239.99808 * 2 1 3 5 5 C 1.35726 * 117.00304 * 274.74561 * 4 2 1 6 6 C 1.39232 * 120.37911 * 5.36751 * 5 4 2 7 7 C 1.38324 * 118.44307 * 180.02562 * 6 5 4 8 8 C 1.39459 * 119.13232 * 0.02562 * 7 6 5 9 9 C 1.47932 * 119.65874 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99284 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00415 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00159 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47219 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47261 * 59.99835 * 13 12 11 15 15 O 1.42902 * 109.46980 * 299.99677 * 13 12 11 16 16 C 1.53001 * 109.46888 * 179.97438 * 13 12 11 17 17 N 1.46503 * 109.46767 * 185.00069 * 16 13 12 18 18 C 1.36939 * 119.99920 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00030 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00088 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00251 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46825 * 90.00633 * 22 20 18 24 24 H 1.48501 * 109.47207 * 210.00113 * 22 20 18 25 25 H 1.48492 * 109.47278 * 330.00429 * 22 20 18 26 26 N 1.32798 * 120.68739 * 359.97438 * 8 7 6 27 27 C 1.31380 * 121.69310 * 359.70486 * 26 8 7 28 28 H 1.09003 * 109.47391 * 60.00084 * 1 2 3 29 29 H 1.09007 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47330 * 300.00284 * 1 2 3 31 31 H 1.09001 * 109.46881 * 119.99833 * 2 1 3 32 32 H 1.09004 * 109.46995 * 60.00188 * 3 2 1 33 33 H 1.09003 * 109.47120 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47078 * 299.99712 * 3 2 1 35 35 H 1.07998 * 120.77996 * 0.02639 * 6 5 4 36 36 H 1.08000 * 120.42829 * 180.02562 * 7 6 5 37 37 H 0.97000 * 119.99865 * 359.97438 * 11 9 8 38 38 H 1.09008 * 109.47291 * 299.99727 * 12 11 9 39 39 H 1.09004 * 109.47389 * 60.00009 * 12 11 9 40 40 H 0.96694 * 114.00028 * 299.99762 * 15 13 12 41 41 H 1.08997 * 109.47329 * 304.99397 * 16 13 12 42 42 H 1.08994 * 109.47472 * 65.00129 * 16 13 12 43 43 H 0.96998 * 120.00317 * 359.97438 * 17 16 13 44 44 H 0.96998 * 120.00177 * 179.97438 * 21 20 18 45 45 H 1.08004 * 119.59510 * 180.31080 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1174 -2.0245 -1.0961 6 6 1.6719 -2.7097 0.0311 7 6 1.8051 -4.0862 0.0608 8 6 2.3778 -4.7366 -1.0319 9 6 2.5265 -6.2083 -1.0123 10 8 2.1507 -6.8441 -0.0469 11 7 3.0794 -6.8439 -2.0642 12 6 3.2261 -8.3014 -2.0449 13 6 3.8766 -8.7658 -3.3496 14 1 4.8583 -8.3031 -3.4509 15 8 3.0539 -8.3844 -4.4541 16 6 4.0303 -10.2879 -3.3291 17 7 4.7598 -10.7211 -4.5235 18 6 5.0179 -12.0510 -4.7233 19 1 4.6833 -12.7806 -4.0007 20 6 5.7096 -12.4614 -5.8547 21 7 5.9573 -13.7397 -6.0471 22 14 6.2877 -11.1996 -7.1050 23 1 7.6509 -10.7340 -6.7442 24 1 6.3169 -11.8176 -8.4549 25 1 5.3550 -10.0441 -7.1096 26 7 2.7911 -4.0485 -2.0899 27 6 2.6734 -2.7415 -2.1522 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.2326 -2.1790 0.8628 36 1 1.4700 -4.6498 0.9189 37 1 3.3796 -6.3364 -2.8344 38 1 3.8532 -8.5924 -1.2022 39 1 2.2443 -8.7641 -1.9441 40 1 2.1635 -8.7606 -4.4296 41 1 4.5830 -10.5854 -2.4381 42 1 3.0444 -10.7526 -3.3172 43 1 5.0594 -10.0660 -5.1731 44 1 6.4403 -14.0265 -6.8379 45 1 3.0165 -2.2164 -3.0314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699077647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:04 Heat of formation + Delta-G solvation = -106.181527 kcal Electronic energy + Delta-G solvation = -26131.247939 eV Core-core repulsion = 22148.415969 eV Total energy + Delta-G solvation = -3982.831970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03138 -40.78956 -39.45134 -38.83272 -36.22204 -35.38874 -34.35097 -33.51365 -33.38637 -31.82156 -30.62467 -28.22191 -27.42342 -25.65482 -24.77484 -23.85082 -22.85499 -22.57081 -21.46661 -19.87475 -19.58711 -19.02590 -18.19595 -17.43445 -17.25434 -16.71172 -16.64561 -16.52464 -16.06847 -15.89551 -15.64740 -15.41923 -15.16060 -15.05696 -14.80880 -14.54627 -14.22839 -14.10390 -13.92285 -13.52992 -13.43860 -13.33996 -13.18089 -13.13791 -12.85285 -12.80585 -12.24358 -12.01473 -11.89021 -11.83190 -11.77313 -11.51703 -11.08014 -10.98978 -10.96767 -10.70699 -10.23076 -9.54312 -9.31467 -8.03491 -5.37123 -0.41534 0.06446 1.40530 1.42481 1.51033 1.61505 1.89980 2.03930 2.48873 2.73821 3.08930 3.26698 3.37279 3.46509 3.52375 3.67255 3.75269 3.88213 3.95223 3.97259 3.98813 4.07721 4.12448 4.21724 4.59377 4.61348 4.65470 4.68757 4.73976 4.77409 4.85355 4.87786 4.88902 4.92990 5.17351 5.20896 5.23960 5.27648 5.29690 5.73789 6.11893 6.19912 6.34565 6.68919 6.76879 7.07397 7.08137 7.82905 8.01948 9.17661 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001926 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.817252 B =14532.056341 C =15268.068974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 C -0.148 4.148 4 O -0.306 6.306 5 C 0.115 3.885 6 C -0.171 4.171 7 C -0.067 4.067 8 C 0.010 3.990 9 C 0.571 3.429 10 O -0.572 6.572 11 N -0.696 5.696 12 C 0.098 3.902 13 C 0.105 3.895 14 H 0.107 0.893 15 O -0.563 6.563 16 C 0.125 3.875 17 N -0.753 5.753 18 C -0.238 4.238 19 H 0.058 0.942 20 C -0.062 4.062 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.253 1.253 26 N -0.431 5.431 27 C 0.067 3.933 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.419 0.581 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.387 0.613 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.368 0.632 44 H 0.258 0.742 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 36.413 15.305 41.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.008 3.992 3 C -0.205 4.205 4 O -0.218 6.218 5 C 0.065 3.935 6 C -0.197 4.197 7 C -0.088 4.088 8 C -0.126 4.126 9 C 0.357 3.643 10 O -0.452 6.452 11 N -0.347 5.347 12 C -0.027 4.027 13 C 0.045 3.955 14 H 0.125 0.875 15 O -0.370 6.370 16 C -0.002 4.002 17 N -0.399 5.399 18 C -0.369 4.369 19 H 0.076 0.924 20 C -0.254 4.254 21 N -0.633 5.633 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.177 1.177 26 N -0.142 5.142 27 C -0.096 4.096 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.193 0.807 36 H 0.173 0.827 37 H 0.256 0.744 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.237 0.763 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.202 0.798 44 H 0.067 0.933 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.386 35.707 15.036 40.383 hybrid contribution -0.262 0.124 -0.222 0.365 sum -11.648 35.831 14.814 40.485 Atomic orbital electron populations 1.22409 0.93893 1.03146 1.04363 1.22896 0.95281 0.94522 0.86459 1.21903 1.02104 0.92289 1.04223 1.86147 1.80077 1.14841 1.40695 1.20475 0.93504 0.84532 0.94969 1.21992 1.03846 0.94138 0.99687 1.22045 0.93983 0.94609 0.98190 1.20840 1.04795 0.93465 0.93515 1.18038 0.77320 0.86491 0.82416 1.90768 1.51806 1.67632 1.34953 1.45674 1.60892 1.07902 1.20222 1.21960 1.02211 0.80088 0.98411 1.22154 0.95053 0.93346 0.84957 0.87485 1.86544 1.29156 1.74688 1.46628 1.21393 0.95895 0.93303 0.89580 1.42561 1.68682 1.03873 1.24770 1.19055 1.28769 0.84253 1.04834 0.92390 1.25502 1.01471 0.97769 1.00643 1.69882 1.47569 1.15703 1.30116 0.85392 0.78826 0.79226 0.78264 1.20358 1.22217 1.17741 1.67535 1.13669 1.08620 1.24405 1.22585 0.99712 0.88238 0.99084 0.91655 0.92356 0.88676 0.89446 0.88262 0.91816 0.91536 0.80713 0.82735 0.74385 0.90001 0.90320 0.76329 0.94113 0.94534 0.79813 0.93293 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 9.19 71.98 0.66 -0.19 16 2 C 0.06 0.39 2.85 30.59 0.09 0.48 16 3 C -0.15 -0.57 9.56 71.98 0.69 0.12 16 4 O -0.31 -3.63 9.80 -90.49 -0.89 -4.51 16 5 C 0.11 1.60 6.63 22.75 0.15 1.75 16 6 C -0.17 -2.14 8.34 22.53 0.19 -1.95 16 7 C -0.07 -1.19 9.62 22.58 0.22 -0.97 16 8 C 0.01 0.23 6.74 41.86 0.28 0.51 16 9 C 0.57 15.22 7.80 86.81 0.68 15.90 16 10 O -0.57 -18.19 16.31 -3.87 -0.06 -18.25 16 11 N -0.70 -17.02 5.44 -465.89 -2.53 -19.56 16 12 C 0.10 2.42 5.34 86.38 0.46 2.88 16 13 C 0.10 2.92 3.09 30.60 0.09 3.02 16 14 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 15 O -0.56 -15.87 13.03 -148.98 -1.94 -17.81 16 16 C 0.13 4.53 5.90 86.38 0.51 5.04 16 17 N -0.75 -35.31 5.35 -343.45 -1.84 -37.15 16 18 C -0.24 -13.78 10.47 84.03 0.88 -12.90 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 21 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 22 Si 0.96 46.52 27.74 68.60 1.90 48.42 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.25 -11.37 6.52 99.48 0.65 -10.72 16 26 N -0.43 -9.02 9.53 -184.53 -1.76 -10.78 16 27 C 0.07 1.10 11.14 85.00 0.95 2.04 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.36 6.97 -2.38 -0.02 0.34 16 30 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.09 0.35 6.32 -2.39 -0.02 0.33 16 32 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.18 1.09 5.59 -2.91 -0.02 1.08 16 36 H 0.15 2.55 7.63 -2.91 -0.02 2.52 16 37 H 0.42 9.78 7.67 -92.71 -0.71 9.07 16 38 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.39 8.83 9.05 -74.06 -0.67 8.16 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.37 16.86 5.53 -92.71 -0.51 16.35 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 45 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -76.50 378.67 -1.42 -77.92 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.91 Total: 32.64 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.31 Total: 12.49 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -5.83 Total: -130.89 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -2.89 Total: -40.58 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -76.50 -1.42 -77.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699077647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.264 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds