Wall clock time and date at job start Tue Mar 31 2020 13:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 O 1.42905 * 109.46374 * 120.00221 * 2 1 3 5 5 C 1.35715 * 117.00124 * 85.26588 * 4 2 1 6 6 C 1.39227 * 120.38604 * 354.60271 * 5 4 2 7 7 C 1.38322 * 118.44953 * 179.75287 * 6 5 4 8 8 C 1.39471 * 119.12835 * 0.51045 * 7 6 5 9 9 C 1.47927 * 119.65649 * 179.75280 * 8 7 6 10 10 O 1.21551 * 119.99953 * 359.72547 * 9 8 7 11 11 N 1.34772 * 119.99904 * 179.72937 * 9 8 7 12 12 C 1.46507 * 119.99906 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47021 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.46967 * 305.00116 * 13 12 11 15 15 O 1.42898 * 109.47286 * 65.00041 * 13 12 11 16 16 C 1.53000 * 109.46737 * 185.00251 * 13 12 11 17 17 N 1.46501 * 109.47009 * 179.97438 * 16 13 12 18 18 C 1.36935 * 120.00220 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99883 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00071 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47313 * 59.99625 * 22 20 18 24 24 H 1.48503 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47370 * 299.99808 * 22 20 18 26 26 N 1.32793 * 120.68714 * 359.48006 * 8 7 6 27 27 C 1.31382 * 121.69378 * 0.26767 * 26 8 7 28 28 H 1.09005 * 109.46662 * 60.00032 * 1 2 3 29 29 H 1.08995 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47207 * 300.00535 * 1 2 3 31 31 H 1.08997 * 109.47207 * 239.99465 * 2 1 3 32 32 H 1.08998 * 109.46918 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47017 * 299.99481 * 3 2 1 34 34 H 1.08996 * 109.47059 * 60.00009 * 3 2 1 35 35 H 1.08010 * 120.77628 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.43603 * 180.26342 * 7 6 5 37 37 H 0.96996 * 120.00540 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.46765 * 60.00275 * 12 11 9 39 39 H 1.08996 * 109.46947 * 300.00352 * 12 11 9 40 40 H 0.96708 * 113.99537 * 60.00040 * 15 13 12 41 41 H 1.08997 * 109.47282 * 299.99672 * 16 13 12 42 42 H 1.08995 * 109.47575 * 60.00290 * 16 13 12 43 43 H 0.97008 * 119.99736 * 359.97438 * 17 16 13 44 44 H 0.96997 * 119.99783 * 180.02562 * 21 20 18 45 45 H 1.08000 * 119.59425 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.1174 -2.0245 1.0962 6 6 1.6718 -2.7098 -0.0308 7 6 1.8094 -4.0858 -0.0626 8 6 2.3763 -4.7368 1.0328 9 6 2.5241 -6.2086 1.0136 10 8 2.1476 -6.8446 0.0486 11 7 3.0760 -6.8442 2.0660 12 6 3.2218 -8.3019 2.0472 13 6 3.8711 -8.7664 3.3524 14 1 4.8128 -8.2372 3.4980 15 8 2.9944 -8.4882 4.4460 16 6 4.1374 -10.2714 3.2821 17 7 4.7597 -10.7161 4.5316 18 6 5.0919 -12.0338 4.7000 19 1 4.8946 -12.7454 3.9118 20 6 5.6811 -12.4552 5.8841 21 7 5.9210 -11.5881 6.8448 22 14 6.1335 -14.2529 6.1141 23 1 7.1051 -14.6569 5.0662 24 1 6.7444 -14.4421 7.4544 25 1 4.9111 -15.0890 6.0043 26 7 2.7898 -4.0487 2.0906 27 6 2.6782 -2.7410 2.1501 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.2329 -2.1789 -0.8628 36 1 1.4785 -4.6490 -0.9227 37 1 3.3767 -6.3367 2.8360 38 1 3.8492 -8.5934 1.2050 39 1 2.2398 -8.7639 1.9458 40 1 2.1351 -8.9274 4.3827 41 1 3.1957 -10.8005 3.1364 42 1 4.8062 -10.4835 2.4480 43 1 4.9372 -10.0768 5.2393 44 1 6.3330 -11.8825 7.6720 45 1 3.0255 -2.2155 3.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699077657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:07 Heat of formation + Delta-G solvation = -108.579193 kcal Electronic energy + Delta-G solvation = -26042.242402 eV Core-core repulsion = 22059.306461 eV Total energy + Delta-G solvation = -3982.935941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02742 -40.78001 -39.42730 -38.78718 -36.07812 -35.38840 -34.34606 -33.42557 -33.17256 -31.75449 -30.37250 -28.21321 -27.28204 -25.69845 -24.87327 -24.06506 -22.76028 -22.57266 -21.44078 -19.67470 -19.27250 -18.94673 -18.20420 -17.46618 -17.22704 -16.68377 -16.65027 -16.43300 -16.08606 -15.88244 -15.64174 -15.45417 -15.10323 -14.93774 -14.79255 -14.52967 -14.15027 -14.04757 -13.82803 -13.52338 -13.41701 -13.21045 -13.13329 -12.94672 -12.84479 -12.70826 -12.19608 -12.01402 -11.98286 -11.80129 -11.76714 -11.51017 -11.02125 -10.96580 -10.94345 -10.68805 -10.22818 -9.53942 -9.00162 -7.93437 -5.23267 -0.41195 0.06999 1.48204 1.51671 1.57867 1.61635 1.90760 2.04944 2.57143 2.74189 3.10360 3.37356 3.45553 3.48529 3.59527 3.67798 3.75875 3.89046 3.95682 3.98446 4.03857 4.12984 4.20200 4.40649 4.60960 4.62062 4.65834 4.69188 4.74256 4.77924 4.85616 4.87944 4.89315 4.93949 5.20511 5.21326 5.24515 5.28319 5.30807 5.48814 6.12528 6.27046 6.34681 6.69536 6.80700 7.07592 7.34317 8.09860 8.33300 9.29579 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036058 B = 0.001775 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.344418 B =15768.615874 C =16294.066972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 C -0.148 4.148 4 O -0.306 6.306 5 C 0.115 3.885 6 C -0.171 4.171 7 C -0.066 4.066 8 C 0.010 3.990 9 C 0.571 3.429 10 O -0.572 6.572 11 N -0.697 5.697 12 C 0.100 3.900 13 C 0.107 3.893 14 H 0.099 0.901 15 O -0.563 6.563 16 C 0.123 3.877 17 N -0.740 5.740 18 C -0.251 4.251 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.977 3.023 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.277 1.277 26 N -0.432 5.432 27 C 0.066 3.934 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.177 0.823 36 H 0.156 0.844 37 H 0.417 0.583 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.385 0.615 41 H 0.033 0.967 42 H 0.035 0.965 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 29.066 -17.955 36.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.008 3.992 3 C -0.205 4.205 4 O -0.218 6.218 5 C 0.066 3.934 6 C -0.196 4.196 7 C -0.087 4.087 8 C -0.127 4.127 9 C 0.358 3.642 10 O -0.451 6.451 11 N -0.348 5.348 12 C -0.024 4.024 13 C 0.047 3.953 14 H 0.117 0.883 15 O -0.369 6.369 16 C -0.004 4.004 17 N -0.383 5.383 18 C -0.383 4.383 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.805 3.195 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.203 1.203 26 N -0.144 5.144 27 C -0.097 4.097 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.194 0.806 36 H 0.174 0.826 37 H 0.255 0.745 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.233 0.767 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.363 28.432 -17.651 35.342 hybrid contribution -0.280 -0.650 0.006 0.708 sum -11.643 27.782 -17.645 34.911 Atomic orbital electron populations 1.22410 0.93879 1.03151 1.04367 1.22907 0.95298 0.94527 0.86450 1.21901 1.02102 0.92282 1.04228 1.86148 1.80087 1.14816 1.40714 1.20461 0.93479 0.84541 0.94950 1.21995 1.03842 0.94127 0.99660 1.22048 0.93916 0.94612 0.98155 1.20848 1.04898 0.93447 0.93484 1.18046 0.77294 0.86526 0.82383 1.90759 1.51818 1.67628 1.34940 1.45726 1.60895 1.07955 1.20193 1.21972 1.02068 0.80044 0.98334 1.22100 0.93486 0.94594 0.85091 0.88348 1.86574 1.30171 1.73905 1.46296 1.21390 0.96574 0.93193 0.89264 1.42403 1.73209 1.06810 1.15851 1.19634 1.32137 0.86760 0.99749 0.90481 1.25617 1.02559 1.02082 0.96536 1.69839 1.50121 1.35003 1.06865 0.85174 0.78057 0.79771 0.76491 1.20319 1.22161 1.20311 1.67535 1.13674 1.08669 1.24507 1.22584 0.99737 0.88210 0.99137 0.88637 0.92357 0.91670 0.89413 0.91825 0.88216 0.91559 0.80613 0.82635 0.74539 0.89988 0.90294 0.76657 0.94916 0.94689 0.79117 0.94007 0.79578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 9.19 71.98 0.66 -0.30 16 2 C 0.06 0.44 2.85 30.60 0.09 0.52 16 3 C -0.15 -0.66 9.56 71.98 0.69 0.02 16 4 O -0.31 -3.92 9.80 -90.37 -0.89 -4.80 16 5 C 0.12 1.73 6.63 22.75 0.15 1.88 16 6 C -0.17 -2.28 8.34 22.53 0.19 -2.09 16 7 C -0.07 -1.23 9.62 22.59 0.22 -1.02 16 8 C 0.01 0.23 6.74 41.86 0.28 0.51 16 9 C 0.57 16.14 7.80 86.81 0.68 16.82 16 10 O -0.57 -18.83 16.31 -3.88 -0.06 -18.89 16 11 N -0.70 -18.68 5.49 -465.88 -2.56 -21.24 16 12 C 0.10 2.72 5.31 86.38 0.46 3.18 16 13 C 0.11 3.40 3.09 30.59 0.09 3.49 16 14 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 15 O -0.56 -18.64 13.03 -148.98 -1.94 -20.58 16 16 C 0.12 4.79 5.92 86.38 0.51 5.30 16 17 N -0.74 -38.13 5.49 -343.46 -1.89 -40.01 16 18 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 22 Si 0.98 46.68 29.55 68.60 2.03 48.70 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 N -0.43 -9.81 9.52 -184.52 -1.76 -11.57 16 27 C 0.07 1.19 11.14 85.00 0.95 2.13 16 28 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.06 0.39 6.97 -2.39 -0.02 0.38 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.41 6.32 -2.39 -0.02 0.39 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.18 1.21 5.59 -2.91 -0.02 1.20 16 36 H 0.16 2.68 7.63 -2.91 -0.02 2.66 16 37 H 0.42 10.94 7.79 -92.71 -0.72 10.22 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.38 10.54 9.05 -74.05 -0.67 9.87 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.38 21.10 7.54 -92.70 -0.70 20.40 16 44 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -73.99 381.79 -1.56 -75.55 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -1.05 Total: 39.98 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.27 Total: 13.11 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -5.92 Total: -133.07 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -2.89 Total: -44.28 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.99 -1.56 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699077657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.027 kcal (2) G-P(sol) polarization free energy of solvation -73.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds