Wall clock time and date at job start Tue Mar 31 2020 14:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46752 * 2 1 4 4 C 1.46896 * 111.00433 * 76.02772 * 3 2 1 5 5 C 1.52999 * 109.47640 * 199.54535 * 4 3 2 6 6 N 1.46501 * 109.46954 * 174.88743 * 5 4 3 7 7 C 1.34780 * 119.99594 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.46657 * 119.99899 * 179.97438 * 7 6 5 10 10 O 1.34914 * 125.98771 * 0.03398 * 9 7 6 11 11 C 1.33924 * 109.38660 * 179.97438 * 10 9 7 12 12 C 1.35136 * 108.76675 * 359.71965 * 11 10 9 13 13 C 1.36540 * 125.98756 * 179.97438 * 9 7 6 14 14 C 1.50701 * 126.64792 * 0.02781 * 13 9 7 15 15 C 1.46901 * 111.00048 * 199.98360 * 3 2 1 16 16 C 1.50703 * 109.47496 * 66.04396 * 15 3 2 17 17 O 1.21295 * 119.99286 * 0.02562 * 16 15 3 18 18 N 1.34775 * 120.00462 * 180.02562 * 16 15 3 19 19 C 1.37090 * 120.00095 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00250 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00008 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46639 * 60.00877 * 23 21 19 25 25 H 1.48502 * 109.47022 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47263 * 300.00752 * 23 21 19 27 27 H 1.08999 * 109.47268 * 54.87135 * 1 2 3 28 28 H 1.09004 * 109.46616 * 174.87217 * 1 2 3 29 29 H 1.08997 * 109.46784 * 294.86870 * 1 2 3 30 30 H 1.08996 * 109.47166 * 240.00264 * 2 1 3 31 31 H 1.08998 * 109.47450 * 119.99472 * 2 1 3 32 32 H 1.09008 * 109.46743 * 79.54232 * 4 3 2 33 33 H 1.09004 * 109.46897 * 319.55020 * 4 3 2 34 34 H 1.08991 * 109.46706 * 54.88458 * 5 4 3 35 35 H 1.08996 * 109.46815 * 294.88442 * 5 4 3 36 36 H 0.96998 * 119.99967 * 0.02562 * 6 5 4 37 37 H 1.07996 * 125.62156 * 179.97438 * 11 10 9 38 38 H 1.07999 * 126.44560 * 180.26616 * 12 11 10 39 39 H 1.09006 * 109.46913 * 89.99711 * 14 13 9 40 40 H 1.09004 * 109.46749 * 330.00043 * 14 13 9 41 41 H 1.08996 * 109.47117 * 209.99510 * 14 13 9 42 42 H 1.09002 * 109.47678 * 186.04944 * 15 3 2 43 43 H 1.09005 * 109.47194 * 306.04428 * 15 3 2 44 44 H 0.96999 * 119.99811 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8829 1.9918 1.3308 5 6 1.9277 3.5158 1.2036 6 7 1.6697 4.1228 2.5117 7 6 1.6605 5.4643 2.6421 8 8 1.8660 6.1712 1.6732 9 6 1.4016 6.0720 3.9515 10 8 1.1597 5.4070 5.1002 11 6 0.9694 6.2870 6.0916 12 6 1.0931 7.5370 5.5932 13 6 1.3643 7.4098 4.2218 14 6 1.5790 8.5323 3.2396 15 6 3.4102 1.4518 -0.4687 16 6 3.4712 1.0500 -1.9199 17 8 2.4558 0.7391 -2.5061 18 7 4.6537 1.0362 -2.5663 19 6 4.7092 0.6702 -3.8862 20 1 3.8051 0.3933 -4.4083 21 6 5.9282 0.6564 -4.5528 22 7 7.0282 0.9938 -3.9177 23 14 6.0037 0.1583 -6.3516 24 1 5.1652 1.0826 -7.1566 25 1 7.4096 0.2253 -6.8252 26 1 5.4964 -1.2291 -6.5028 27 1 -0.3634 0.5913 -0.8405 28 1 -0.3633 -1.0236 -0.0919 29 1 -0.3633 0.4322 0.9324 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.7005 1.6562 1.9688 33 1 0.9319 1.6917 1.7709 34 1 1.1677 3.8437 0.4946 35 1 2.9118 3.8219 0.8488 36 1 1.5062 3.5593 3.2841 37 1 0.7567 6.0387 7.1209 38 1 0.9984 8.4602 6.1455 39 1 0.6238 8.8163 2.7979 40 1 2.2589 8.2026 2.4539 41 1 2.0096 9.3900 3.7564 42 1 3.7826 2.4702 -0.3577 43 1 4.0258 0.7736 0.1222 44 1 5.4657 1.2845 -2.0973 45 1 7.8793 0.9838 -4.3829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753077926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:55 Heat of formation + Delta-G solvation = -52.320161 kcal Electronic energy + Delta-G solvation = -26673.987408 eV Core-core repulsion = 22693.491042 eV Total energy + Delta-G solvation = -3980.496366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01877 -39.66411 -38.72803 -36.90912 -35.11454 -34.19191 -33.79099 -31.39993 -31.14104 -30.59387 -29.30920 -27.74752 -26.17989 -24.29957 -23.45435 -22.37750 -21.40882 -21.03794 -20.07644 -19.14925 -18.38651 -17.84113 -16.73689 -16.45985 -16.28970 -15.98182 -15.56049 -14.91948 -14.75584 -14.66948 -14.28080 -13.94417 -13.80743 -13.72871 -13.56284 -13.33646 -13.27363 -13.10132 -12.81578 -12.40811 -12.16914 -12.06789 -11.73127 -11.59277 -11.46727 -11.42847 -11.08330 -10.79140 -10.53403 -10.41745 -10.30375 -10.18785 -10.03722 -9.43504 -9.32933 -8.86198 -8.41916 -7.97556 -7.90035 -6.39002 -3.79726 0.77137 2.00951 2.38129 2.94896 2.96840 3.22142 3.27732 3.32166 3.92264 4.03406 4.25649 4.36769 4.45236 4.61587 4.81498 4.99645 5.12309 5.15247 5.20829 5.27209 5.35951 5.43091 5.44347 5.49441 5.58728 5.72449 5.78974 5.82498 5.84027 5.86934 5.91190 5.97244 6.07001 6.12520 6.23748 6.29963 6.46347 6.52328 6.57055 7.23757 7.26246 7.36471 7.57583 7.90576 8.08613 8.64355 9.20632 9.57121 10.08811 10.78715 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.002296 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.047408 B =12194.246506 C =13321.921951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.511 5.511 4 C 0.044 3.956 5 C 0.120 3.880 6 N -0.718 5.718 7 C 0.602 3.398 8 O -0.512 6.512 9 C -0.085 4.085 10 O -0.165 6.165 11 C -0.006 4.006 12 C -0.225 4.225 13 C -0.087 4.087 14 C -0.097 4.097 15 C 0.042 3.958 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.023 0.977 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.210 0.790 38 H 0.156 0.844 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 8.535 22.548 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.003 4.003 6 N -0.370 5.370 7 C 0.388 3.612 8 O -0.389 6.389 9 C -0.136 4.136 10 O -0.060 6.060 11 C -0.076 4.076 12 C -0.244 4.244 13 C -0.090 4.090 14 C -0.153 4.153 15 C -0.090 4.090 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.226 0.774 38 H 0.173 0.827 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.590 8.750 21.007 25.100 hybrid contribution 1.089 -0.596 0.665 1.408 sum -9.501 8.155 21.671 25.028 Atomic orbital electron populations 1.21694 0.95254 1.01102 1.01600 1.22165 0.96019 0.87842 1.01395 1.61441 1.20055 1.19609 1.22508 1.22250 1.01620 0.93442 0.91195 1.21441 1.03006 0.92404 0.83432 1.45828 1.72192 1.06132 1.12801 1.16474 0.77585 0.82267 0.84915 1.90891 1.49562 1.61512 1.36976 1.21913 1.14175 0.91331 0.86230 1.84048 1.68611 1.37087 1.16289 1.24351 1.02313 0.87689 0.93223 1.21767 1.09315 0.98864 0.94475 1.20683 0.99359 0.93743 0.95191 1.20453 1.03172 0.94343 0.97362 1.21957 0.88920 1.01968 0.96112 1.19693 0.84569 0.84952 0.87901 1.90509 1.34056 1.53215 1.68194 1.41862 1.07445 1.59432 1.11360 1.19640 0.95098 1.41979 0.86064 0.87957 1.25259 0.94816 0.97505 1.00386 1.69607 0.98727 1.48398 1.37634 0.85923 0.77031 0.79237 0.82055 1.19869 1.21016 1.19957 0.91359 0.92839 0.93916 0.88424 0.95913 0.94212 0.90129 0.89732 0.90825 0.76295 0.77351 0.82668 0.90692 0.89298 0.91457 0.89262 0.93367 0.77514 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.96 37.16 0.37 -1.53 16 2 C 0.05 0.83 5.18 -3.82 -0.02 0.81 16 3 N -0.51 -8.20 4.10 -236.07 -0.97 -9.17 16 4 C 0.04 0.53 4.92 -3.83 -0.02 0.51 16 5 C 0.12 1.53 5.71 -4.04 -0.02 1.50 16 6 N -0.72 -7.87 5.55 -61.63 -0.34 -8.21 16 7 C 0.60 7.80 7.79 -12.86 -0.10 7.70 16 8 O -0.51 -8.23 14.74 5.20 0.08 -8.16 16 9 C -0.08 -0.95 7.13 -36.80 -0.26 -1.21 16 10 O -0.16 -1.50 10.40 5.01 0.05 -1.45 16 11 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 12 C -0.23 -1.70 10.83 -39.88 -0.43 -2.13 16 13 C -0.09 -0.89 6.20 -104.43 -0.65 -1.54 16 14 C -0.10 -0.93 9.82 36.01 0.35 -0.58 16 15 C 0.04 0.74 5.27 -4.97 -0.03 0.71 16 16 C 0.44 10.40 7.29 -10.98 -0.08 10.32 16 17 O -0.58 -15.31 14.12 5.54 0.08 -15.23 16 18 N -0.56 -14.34 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 23 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.49 6.91 -51.93 -0.36 0.13 16 30 H 0.10 1.88 5.85 -51.93 -0.30 1.58 16 31 H 0.02 0.31 7.99 -51.93 -0.42 -0.10 16 32 H 0.04 0.43 8.00 -51.92 -0.42 0.02 16 33 H 0.08 0.85 6.58 -51.93 -0.34 0.51 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.03 6.95 -51.93 -0.36 0.66 16 36 H 0.40 3.39 8.23 -40.82 -0.34 3.06 16 37 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.03 6.44 -51.93 -0.33 0.70 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.47 6.71 -51.93 -0.35 1.12 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -33.42 377.45 -6.97 -40.39 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.43 Total: 11.45 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.77 Total: 6.91 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.64 Total: -55.80 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.21 Total: -24.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.42 -6.97 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753077926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.931 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds