Wall clock time and date at job start Tue Mar 31 2020 14:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46752 * 2 1 4 4 C 1.46896 * 111.00433 * 76.02772 * 3 2 1 5 5 C 1.52999 * 109.47640 * 199.54535 * 4 3 2 6 6 N 1.46501 * 109.46954 * 174.88743 * 5 4 3 7 7 C 1.34780 * 119.99594 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.46657 * 119.99899 * 179.97438 * 7 6 5 10 10 O 1.34914 * 125.98771 * 0.03398 * 9 7 6 11 11 C 1.33924 * 109.38660 * 179.97438 * 10 9 7 12 12 C 1.35136 * 108.76675 * 359.71965 * 11 10 9 13 13 C 1.36540 * 125.98756 * 179.97438 * 9 7 6 14 14 C 1.50701 * 126.64792 * 0.02781 * 13 9 7 15 15 C 1.46901 * 111.00048 * 199.98360 * 3 2 1 16 16 C 1.50703 * 109.47496 * 66.04396 * 15 3 2 17 17 O 1.21295 * 119.99286 * 0.02562 * 16 15 3 18 18 N 1.34775 * 120.00462 * 180.02562 * 16 15 3 19 19 C 1.37090 * 120.00095 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00250 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00008 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46639 * 60.00877 * 23 21 19 25 25 H 1.48502 * 109.47022 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47263 * 300.00752 * 23 21 19 27 27 H 1.08999 * 109.47268 * 54.87135 * 1 2 3 28 28 H 1.09004 * 109.46616 * 174.87217 * 1 2 3 29 29 H 1.08997 * 109.46784 * 294.86870 * 1 2 3 30 30 H 1.08996 * 109.47166 * 240.00264 * 2 1 3 31 31 H 1.08998 * 109.47450 * 119.99472 * 2 1 3 32 32 H 1.09008 * 109.46743 * 79.54232 * 4 3 2 33 33 H 1.09004 * 109.46897 * 319.55020 * 4 3 2 34 34 H 1.08991 * 109.46706 * 54.88458 * 5 4 3 35 35 H 1.08996 * 109.46815 * 294.88442 * 5 4 3 36 36 H 0.96998 * 119.99967 * 0.02562 * 6 5 4 37 37 H 1.07996 * 125.62156 * 179.97438 * 11 10 9 38 38 H 1.07999 * 126.44560 * 180.26616 * 12 11 10 39 39 H 1.09006 * 109.46913 * 89.99711 * 14 13 9 40 40 H 1.09004 * 109.46749 * 330.00043 * 14 13 9 41 41 H 1.08996 * 109.47117 * 209.99510 * 14 13 9 42 42 H 1.09002 * 109.47678 * 186.04944 * 15 3 2 43 43 H 1.09005 * 109.47194 * 306.04428 * 15 3 2 44 44 H 0.96999 * 119.99811 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8829 1.9918 1.3308 5 6 1.9277 3.5158 1.2036 6 7 1.6697 4.1228 2.5117 7 6 1.6605 5.4643 2.6421 8 8 1.8660 6.1712 1.6732 9 6 1.4016 6.0720 3.9515 10 8 1.1597 5.4070 5.1002 11 6 0.9694 6.2870 6.0916 12 6 1.0931 7.5370 5.5932 13 6 1.3643 7.4098 4.2218 14 6 1.5790 8.5323 3.2396 15 6 3.4102 1.4518 -0.4687 16 6 3.4712 1.0500 -1.9199 17 8 2.4558 0.7391 -2.5061 18 7 4.6537 1.0362 -2.5663 19 6 4.7092 0.6702 -3.8862 20 1 3.8051 0.3933 -4.4083 21 6 5.9282 0.6564 -4.5528 22 7 7.0282 0.9938 -3.9177 23 14 6.0037 0.1583 -6.3516 24 1 5.1652 1.0826 -7.1566 25 1 7.4096 0.2253 -6.8252 26 1 5.4964 -1.2291 -6.5028 27 1 -0.3634 0.5913 -0.8405 28 1 -0.3633 -1.0236 -0.0919 29 1 -0.3633 0.4322 0.9324 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.7005 1.6562 1.9688 33 1 0.9319 1.6917 1.7709 34 1 1.1677 3.8437 0.4946 35 1 2.9118 3.8219 0.8488 36 1 1.5062 3.5593 3.2841 37 1 0.7567 6.0387 7.1209 38 1 0.9984 8.4602 6.1455 39 1 0.6238 8.8163 2.7979 40 1 2.2589 8.2026 2.4539 41 1 2.0096 9.3900 3.7564 42 1 3.7826 2.4702 -0.3577 43 1 4.0258 0.7736 0.1222 44 1 5.4657 1.2845 -2.0973 45 1 7.8793 0.9838 -4.3829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753077926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:55 Heat of formation + Delta-G solvation = -78.015883 kcal Electronic energy + Delta-G solvation = -26675.101658 eV Core-core repulsion = 22693.491042 eV Total energy + Delta-G solvation = -3981.610616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66802 -40.73828 -40.31567 -38.36901 -36.19067 -35.76173 -34.93501 -33.30141 -32.25721 -31.53931 -30.41204 -28.66812 -27.61877 -26.01843 -24.41185 -23.25527 -22.31028 -22.12358 -21.08007 -20.77932 -19.86125 -19.17712 -17.92494 -17.46654 -17.24477 -16.99428 -16.83770 -16.42226 -16.12251 -16.01439 -15.63590 -15.39360 -15.27955 -14.85269 -14.58100 -14.24248 -14.06997 -13.99850 -13.88497 -13.67031 -13.52412 -13.42342 -13.01368 -12.83851 -12.79867 -12.67638 -12.57677 -12.42555 -12.14719 -12.02392 -11.76595 -11.40946 -11.30538 -10.67332 -10.32086 -10.24964 -9.98723 -9.56522 -9.24361 -8.45543 -5.94002 0.02052 1.39632 1.41065 1.41830 1.52055 1.63213 2.05965 2.07130 2.10784 2.30069 2.86553 3.21365 3.37688 3.72603 3.81369 3.85937 3.95637 4.03359 4.16467 4.27675 4.38389 4.46276 4.53748 4.56671 4.59164 4.63281 4.72283 4.73714 4.75847 4.79896 4.89327 5.01172 5.10854 5.16709 5.22909 5.27536 5.41387 5.42320 5.46316 5.85776 5.89685 6.08841 6.19461 6.42007 6.61695 7.00069 7.14040 7.57863 8.13675 8.71821 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.002296 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.047408 B =12194.246506 C =13321.921951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.533 5.533 4 C 0.053 3.947 5 C 0.128 3.872 6 N -0.704 5.704 7 C 0.597 3.403 8 O -0.556 6.556 9 C -0.117 4.117 10 O -0.168 6.168 11 C 0.017 3.983 12 C -0.237 4.237 13 C -0.097 4.097 14 C -0.097 4.097 15 C 0.055 3.945 16 C 0.442 3.558 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.418 0.582 37 H 0.258 0.742 38 H 0.181 0.819 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 8.494 25.666 28.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.258 5.258 4 C -0.075 4.075 5 C 0.004 3.996 6 N -0.356 5.356 7 C 0.385 3.615 8 O -0.437 6.437 9 C -0.169 4.169 10 O -0.064 6.064 11 C -0.052 4.052 12 C -0.256 4.256 13 C -0.100 4.100 14 C -0.153 4.153 15 C -0.076 4.076 16 C 0.229 3.771 17 O -0.496 6.496 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.255 0.745 37 H 0.274 0.726 38 H 0.199 0.801 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.015 8.689 24.174 27.950 hybrid contribution 1.142 -0.534 -0.159 1.270 sum -9.873 8.155 24.015 27.216 Atomic orbital electron populations 1.21640 0.93801 1.01709 1.01816 1.22098 0.97210 0.87485 1.00529 1.61355 1.18849 1.20273 1.25341 1.22242 1.03740 0.92124 0.89355 1.21213 1.01333 0.93178 0.83854 1.45628 1.71495 1.05798 1.12635 1.16779 0.76858 0.82476 0.85395 1.90862 1.51684 1.62484 1.38686 1.21534 1.17307 0.91704 0.86348 1.84039 1.68719 1.37538 1.16103 1.25359 0.98744 0.86953 0.94131 1.22100 1.09719 1.00623 0.93156 1.21029 0.98658 0.93495 0.96775 1.20432 1.02717 0.95151 0.97007 1.21797 0.90823 1.02948 0.92068 1.20742 0.83329 0.82955 0.90091 1.90484 1.35149 1.54210 1.69805 1.41945 1.08281 1.60252 1.10923 1.19611 0.94874 1.43960 0.87582 0.90279 1.26042 0.94125 0.96976 1.04303 1.69673 0.99086 1.48478 1.39088 0.84999 0.77558 0.78820 0.77023 1.19866 1.19529 1.19552 0.94159 0.91527 0.91142 0.92732 0.93162 0.91857 0.87833 0.92088 0.92387 0.74533 0.72635 0.80119 0.90629 0.91932 0.89245 0.87990 0.91029 0.77148 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.96 71.98 0.72 -2.72 16 2 C 0.05 1.64 5.18 86.30 0.45 2.09 16 3 N -0.53 -16.65 4.10 -900.78 -3.69 -20.34 16 4 C 0.05 1.16 4.92 86.30 0.42 1.58 16 5 C 0.13 3.21 5.71 86.38 0.49 3.71 16 6 N -0.70 -14.91 5.55 -467.12 -2.59 -17.51 16 7 C 0.60 15.75 7.79 86.44 0.67 16.42 16 8 O -0.56 -18.92 14.74 -4.32 -0.06 -18.99 16 9 C -0.12 -2.55 7.13 24.07 0.17 -2.38 16 10 O -0.17 -2.66 10.40 -4.98 -0.05 -2.71 16 11 C 0.02 0.16 12.08 67.10 0.81 0.97 16 12 C -0.24 -2.88 10.83 22.07 0.24 -2.64 16 13 C -0.10 -1.90 6.20 -19.74 -0.12 -2.02 16 14 C -0.10 -1.87 9.82 71.24 0.70 -1.17 16 15 C 0.05 1.92 5.27 85.56 0.45 2.37 16 16 C 0.44 21.32 7.29 87.66 0.64 21.96 16 17 O -0.61 -33.87 14.12 -3.08 -0.04 -33.91 16 18 N -0.58 -30.21 5.29 -306.98 -1.62 -31.84 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.92 -50.83 13.05 21.66 0.28 -50.54 16 23 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.43 6.91 -2.39 -0.02 1.41 16 30 H 0.05 2.14 5.85 -2.39 -0.01 2.13 16 31 H 0.05 1.24 7.99 -2.39 -0.02 1.22 16 32 H 0.06 1.14 8.00 -2.38 -0.02 1.12 16 33 H 0.10 1.81 6.58 -2.39 -0.02 1.80 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.64 6.95 -2.39 -0.02 1.62 16 36 H 0.42 6.20 8.23 -92.71 -0.76 5.44 16 37 H 0.26 -0.41 8.06 -2.91 -0.02 -0.43 16 38 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 1.55 6.44 -2.39 -0.02 1.54 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 3.32 6.71 -2.39 -0.02 3.31 16 43 H 0.07 2.19 8.12 -2.38 -0.02 2.17 16 44 H 0.39 19.77 7.90 -92.71 -0.73 19.03 16 45 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -76.95 377.45 0.70 -76.25 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.46 Total: 34.20 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.92 Total: 19.52 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -7.63 Total: -120.23 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.16 Total: -55.61 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.95 0.70 -76.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753077926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.768 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds