Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46745 * 2 1 4 4 N 1.46500 * 109.46729 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99543 * 272.51360 * 4 3 2 6 6 O 1.21585 * 119.99514 * 185.38509 * 5 4 3 7 7 C 1.47535 * 120.00601 * 5.38387 * 5 4 3 8 8 C 1.36664 * 126.88341 * 185.68860 * 7 5 4 9 9 C 1.41853 * 103.81182 * 179.97438 * 8 7 5 10 10 O 1.35735 * 126.78349 * 180.12349 * 9 8 7 11 11 C 1.42897 * 116.99867 * 180.23870 * 10 9 8 12 12 N 1.30531 * 106.42926 * 0.33837 * 9 8 7 13 13 O 1.20876 * 111.89066 * 359.78177 * 12 9 8 14 14 C 1.46494 * 120.00494 * 92.51483 * 4 3 2 15 15 H 1.09003 * 110.91162 * 356.09594 * 14 4 3 16 16 C 1.55156 * 111.00730 * 119.99650 * 14 4 3 17 17 C 1.54321 * 102.94146 * 153.57999 * 16 14 4 18 18 N 1.47024 * 107.27347 * 337.80983 * 17 16 14 19 19 C 1.36932 * 125.64836 * 178.96478 * 18 17 16 20 20 H 1.08000 * 120.00102 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00190 * 359.97394 * 19 18 17 22 22 N 1.31625 * 119.99963 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00245 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47478 * 89.99693 * 23 21 19 25 25 H 1.48496 * 109.47325 * 209.99636 * 23 21 19 26 26 H 1.48498 * 109.46940 * 329.99726 * 23 21 19 27 27 C 1.47425 * 108.70021 * 358.93865 * 18 17 16 28 28 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47257 * 300.00121 * 1 2 3 30 30 H 1.09005 * 109.46745 * 60.00047 * 1 2 3 31 31 H 1.08994 * 109.47257 * 239.99879 * 2 1 3 32 32 H 1.09003 * 109.47101 * 119.99565 * 2 1 3 33 33 H 1.09002 * 109.47220 * 60.00141 * 3 2 1 34 34 H 1.08996 * 109.47144 * 299.99988 * 3 2 1 35 35 H 1.07997 * 128.09187 * 0.02562 * 8 7 5 36 36 H 1.08998 * 109.47507 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47287 * 300.00067 * 11 10 9 38 38 H 1.09001 * 109.47356 * 59.99070 * 11 10 9 39 39 H 1.09001 * 110.72172 * 271.94207 * 16 14 4 40 40 H 1.08996 * 110.71999 * 35.03986 * 16 14 4 41 41 H 1.09004 * 109.87988 * 97.22566 * 17 16 14 42 42 H 1.09004 * 109.88176 * 218.23446 * 17 16 14 43 43 H 0.96999 * 120.00019 * 180.02562 * 22 21 19 44 44 H 1.09001 * 110.36652 * 265.29048 * 27 18 17 45 45 H 1.09003 * 110.36168 * 142.97028 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.3916 1.1671 6 8 5.3901 1.4902 1.1742 7 6 3.4450 1.2161 2.4352 8 6 3.9682 1.2532 3.6972 9 6 2.8461 1.0301 4.5357 10 8 2.8427 0.9770 5.8920 11 6 1.5867 0.7336 6.5286 12 7 1.8182 0.8813 3.7451 13 8 2.1271 0.9803 2.5807 14 6 4.2381 1.4981 -1.2665 15 1 3.5533 1.4658 -2.1139 16 6 5.1434 2.7565 -1.3307 17 6 6.2671 2.3250 -2.2964 18 7 6.3067 0.8553 -2.2913 19 6 7.1540 0.0772 -3.0340 20 1 7.1044 -0.9990 -2.9587 21 6 8.0768 0.6717 -3.8836 22 7 8.1370 1.9833 -3.9758 23 14 9.2323 -0.3898 -4.8973 24 1 8.6005 -0.7000 -6.2049 25 1 10.5052 0.3407 -5.1236 26 1 9.5098 -1.6540 -4.1693 27 6 5.2834 0.3582 -1.3536 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 4.9956 1.4155 3.9880 36 1 1.7246 0.7163 7.6097 37 1 0.8860 1.5258 6.2648 38 1 1.1912 -0.2264 6.1969 39 1 4.5936 3.6069 -1.7341 40 1 5.5468 2.9920 -0.3459 41 1 6.0509 2.6865 -3.3018 42 1 7.2222 2.7251 -1.9561 43 1 8.7816 2.3987 -4.5698 44 1 5.7245 0.1723 -0.3743 45 1 4.8227 -0.5503 -1.7417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753316515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = 37.987160 kcal Electronic energy + Delta-G solvation = -28494.036585 eV Core-core repulsion = 24517.456239 eV Total energy + Delta-G solvation = -3976.580347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.16995 -40.18728 -39.14495 -36.96972 -36.07343 -33.40090 -33.07331 -32.24046 -31.48998 -29.09873 -27.98687 -27.46371 -26.23285 -24.81459 -23.66678 -23.24257 -21.88417 -21.20490 -20.05605 -20.00020 -18.19375 -17.79517 -17.20327 -16.87021 -16.45846 -15.85140 -15.71762 -15.27972 -14.83703 -14.75821 -14.55457 -14.30979 -13.88027 -13.65975 -13.50204 -13.06802 -12.56793 -12.40086 -12.28277 -12.23749 -12.13141 -11.86953 -11.73912 -11.59493 -11.45592 -10.88716 -10.87393 -10.78334 -10.70459 -10.46839 -10.08535 -9.98514 -9.94118 -9.62003 -9.55169 -9.43119 -8.60135 -8.42773 -6.72730 -5.63777 -2.96620 0.64320 1.89245 2.39240 2.45587 2.99156 3.14470 3.44895 3.49961 3.52184 3.86238 4.40897 4.56829 4.60568 4.74580 4.78634 4.81857 4.90302 5.00658 5.11523 5.20273 5.30996 5.40259 5.45722 5.48931 5.56672 5.62653 5.69870 5.77661 5.84752 5.94613 5.99656 6.17353 6.24492 6.46814 6.57757 6.60589 6.63145 6.71763 7.11972 7.35561 7.63385 7.72971 7.80527 7.90399 8.07407 8.33352 9.29383 9.89551 10.55848 11.47941 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.003121 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.394645 B = 8969.407093 C = 9640.219819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.103 3.897 4 N -0.587 5.587 5 C 0.594 3.406 6 O -0.482 6.482 7 C -0.049 4.049 8 C -0.159 4.159 9 C 0.204 3.796 10 O -0.281 6.281 11 C 0.031 3.969 12 N -0.398 5.398 13 O 0.119 5.881 14 C 0.130 3.870 15 H 0.099 0.901 16 C -0.156 4.156 17 C 0.184 3.816 18 N -0.601 5.601 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.190 0.810 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.043 0.957 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.026 -0.238 15.813 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.020 4.020 4 N -0.319 5.319 5 C 0.378 3.622 6 O -0.355 6.355 7 C -0.115 4.115 8 C -0.182 4.182 9 C 0.007 3.993 10 O -0.188 6.188 11 C -0.064 4.064 12 N -0.123 5.123 13 O 0.054 5.946 14 C 0.027 3.973 15 H 0.117 0.883 16 C -0.195 4.195 17 C 0.059 3.941 18 N -0.328 5.328 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.207 0.793 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.230 -0.345 16.061 24.299 hybrid contribution 1.042 -0.454 -0.290 1.173 sum -17.188 -0.799 15.771 23.341 Atomic orbital electron populations 1.21662 0.94982 1.01892 1.01882 1.21963 0.96327 0.96721 1.02950 1.21893 0.78744 0.97706 1.03619 1.47896 1.06840 1.71311 1.05816 1.16617 0.86135 0.78722 0.80728 1.90953 1.11671 1.48066 1.84839 1.24337 0.84358 1.05527 0.97267 1.22200 1.00872 1.06304 0.88830 1.21872 0.90537 1.00679 0.86193 1.86226 1.33656 1.87491 1.11395 1.23085 0.83677 1.01675 0.97940 1.73939 1.23090 1.24900 0.90348 1.85147 1.23134 1.66838 1.19463 1.22570 0.93538 0.98782 0.82372 0.88277 1.23291 0.98283 0.95686 1.02223 1.21066 0.94007 0.83629 0.95357 1.44311 1.38813 1.01973 1.47684 1.19038 1.10351 0.89539 1.16259 0.90519 1.24789 0.99655 0.95897 1.00208 1.69967 1.38413 1.07486 1.41155 0.86115 0.80343 0.79158 0.80137 1.21692 1.21721 1.20746 1.21854 0.89515 0.93586 0.95128 0.92593 0.92415 0.92607 0.91146 0.91706 0.90013 0.89393 0.79284 0.87569 0.92185 0.92160 0.92391 0.90579 0.93643 0.93814 0.93826 0.93978 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.14 -1.41 5.74 -26.72 -0.15 -1.56 16 3 C 0.10 1.09 4.94 -4.04 -0.02 1.07 16 4 N -0.59 -8.39 2.56 -164.89 -0.42 -8.81 16 5 C 0.59 9.28 6.92 -12.47 -0.09 9.19 16 6 O -0.48 -9.33 12.98 5.29 0.07 -9.26 16 7 C -0.05 -0.64 6.67 -36.36 -0.24 -0.89 16 8 C -0.16 -1.98 10.97 -38.77 -0.43 -2.41 16 9 C 0.20 2.46 8.00 -16.72 -0.13 2.33 16 10 O -0.28 -3.02 10.57 -18.91 -0.20 -3.22 16 11 C 0.03 0.22 10.73 101.05 1.08 1.30 16 12 N -0.40 -4.80 11.50 30.47 0.35 -4.45 16 13 O 0.12 1.41 6.52 15.48 0.10 1.52 16 14 C 0.13 2.26 3.54 -65.79 -0.23 2.03 16 15 H 0.10 1.57 7.89 -51.93 -0.41 1.17 16 16 C -0.16 -3.03 6.32 -24.90 -0.16 -3.19 16 17 C 0.18 4.61 5.37 -3.06 -0.02 4.60 16 18 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 19 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -27.59 10.31 55.49 0.57 -27.02 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.13 2.72 6.58 -2.53 -0.02 2.71 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.71 6.66 -51.93 -0.35 0.37 16 33 H 0.08 0.80 5.78 -51.93 -0.30 0.50 16 34 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 35 H 0.19 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.55 6.07 -51.93 -0.32 1.24 16 41 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 42 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.04 0.98 5.72 -51.93 -0.30 0.68 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -32.94 362.60 -6.58 -39.52 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.63 Total: -2.30 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.28 Total: 7.46 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.08 Total: -56.69 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.03 Total: -10.97 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.94 -6.58 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753316515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.508 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds