Wall clock time and date at job start Tue Mar 31 2020 13:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46745 * 2 1 4 4 N 1.46500 * 109.46729 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99543 * 272.51360 * 4 3 2 6 6 O 1.21585 * 119.99514 * 185.38509 * 5 4 3 7 7 C 1.47535 * 120.00601 * 5.38387 * 5 4 3 8 8 C 1.36664 * 126.88341 * 185.68860 * 7 5 4 9 9 C 1.41853 * 103.81182 * 179.97438 * 8 7 5 10 10 O 1.35735 * 126.78349 * 180.12349 * 9 8 7 11 11 C 1.42897 * 116.99867 * 180.23870 * 10 9 8 12 12 N 1.30531 * 106.42926 * 0.33837 * 9 8 7 13 13 O 1.20876 * 111.89066 * 359.78177 * 12 9 8 14 14 C 1.46494 * 120.00494 * 92.51483 * 4 3 2 15 15 H 1.09003 * 110.91162 * 356.09594 * 14 4 3 16 16 C 1.55156 * 111.00730 * 119.99650 * 14 4 3 17 17 C 1.54321 * 102.94146 * 153.57999 * 16 14 4 18 18 N 1.47024 * 107.27347 * 337.80983 * 17 16 14 19 19 C 1.36932 * 125.64836 * 178.96478 * 18 17 16 20 20 H 1.08000 * 120.00102 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00190 * 359.97394 * 19 18 17 22 22 N 1.31625 * 119.99963 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00245 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47478 * 89.99693 * 23 21 19 25 25 H 1.48496 * 109.47325 * 209.99636 * 23 21 19 26 26 H 1.48498 * 109.46940 * 329.99726 * 23 21 19 27 27 C 1.47425 * 108.70021 * 358.93865 * 18 17 16 28 28 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47257 * 300.00121 * 1 2 3 30 30 H 1.09005 * 109.46745 * 60.00047 * 1 2 3 31 31 H 1.08994 * 109.47257 * 239.99879 * 2 1 3 32 32 H 1.09003 * 109.47101 * 119.99565 * 2 1 3 33 33 H 1.09002 * 109.47220 * 60.00141 * 3 2 1 34 34 H 1.08996 * 109.47144 * 299.99988 * 3 2 1 35 35 H 1.07997 * 128.09187 * 0.02562 * 8 7 5 36 36 H 1.08998 * 109.47507 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47287 * 300.00067 * 11 10 9 38 38 H 1.09001 * 109.47356 * 59.99070 * 11 10 9 39 39 H 1.09001 * 110.72172 * 271.94207 * 16 14 4 40 40 H 1.08996 * 110.71999 * 35.03986 * 16 14 4 41 41 H 1.09004 * 109.87988 * 97.22566 * 17 16 14 42 42 H 1.09004 * 109.88176 * 218.23446 * 17 16 14 43 43 H 0.96999 * 120.00019 * 180.02562 * 22 21 19 44 44 H 1.09001 * 110.36652 * 265.29048 * 27 18 17 45 45 H 1.09003 * 110.36168 * 142.97028 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.3916 1.1671 6 8 5.3901 1.4902 1.1742 7 6 3.4450 1.2161 2.4352 8 6 3.9682 1.2532 3.6972 9 6 2.8461 1.0301 4.5357 10 8 2.8427 0.9770 5.8920 11 6 1.5867 0.7336 6.5286 12 7 1.8182 0.8813 3.7451 13 8 2.1271 0.9803 2.5807 14 6 4.2381 1.4981 -1.2665 15 1 3.5533 1.4658 -2.1139 16 6 5.1434 2.7565 -1.3307 17 6 6.2671 2.3250 -2.2964 18 7 6.3067 0.8553 -2.2913 19 6 7.1540 0.0772 -3.0340 20 1 7.1044 -0.9990 -2.9587 21 6 8.0768 0.6717 -3.8836 22 7 8.1370 1.9833 -3.9758 23 14 9.2323 -0.3898 -4.8973 24 1 8.6005 -0.7000 -6.2049 25 1 10.5052 0.3407 -5.1236 26 1 9.5098 -1.6540 -4.1693 27 6 5.2834 0.3582 -1.3536 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 4.9956 1.4155 3.9880 36 1 1.7246 0.7163 7.6097 37 1 0.8860 1.5258 6.2648 38 1 1.1912 -0.2264 6.1969 39 1 4.5936 3.6069 -1.7341 40 1 5.5468 2.9920 -0.3459 41 1 6.0509 2.6865 -3.3018 42 1 7.2222 2.7251 -1.9561 43 1 8.7816 2.3987 -4.5698 44 1 5.7245 0.1723 -0.3743 45 1 4.8227 -0.5503 -1.7417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753316515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:52 Heat of formation + Delta-G solvation = 15.261115 kcal Electronic energy + Delta-G solvation = -28495.022060 eV Core-core repulsion = 24517.456239 eV Total energy + Delta-G solvation = -3977.565822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.13048 -41.48937 -39.94597 -38.59957 -37.30471 -34.64683 -34.34406 -33.40932 -32.85147 -30.95972 -29.14746 -28.59106 -27.15555 -26.66825 -24.87601 -24.30760 -22.83689 -22.35008 -21.96712 -21.19620 -19.26325 -18.98781 -18.68436 -18.08728 -17.64786 -16.98276 -16.71613 -16.60153 -16.24588 -16.00224 -15.73714 -15.58981 -15.37772 -14.77103 -14.55671 -14.47839 -14.14260 -13.76755 -13.65564 -13.17348 -13.06400 -12.97256 -12.87880 -12.76917 -12.71765 -12.55528 -12.43548 -12.12213 -12.02195 -11.98860 -11.85274 -11.68691 -11.46696 -11.02977 -10.93898 -10.67790 -10.42724 -9.77476 -8.84633 -7.82444 -5.18148 -0.40522 0.93727 1.32061 1.46693 1.49389 1.56962 1.58161 1.81610 2.07313 2.52252 2.93456 3.34625 3.44295 3.64979 3.72140 3.88369 3.97828 4.00263 4.06015 4.19683 4.25960 4.26144 4.28835 4.42349 4.54897 4.56968 4.64078 4.69549 4.76152 4.78231 4.93904 4.98198 5.04221 5.08110 5.29193 5.31427 5.45858 5.52490 5.61152 5.69600 5.77258 5.83858 6.17211 6.21389 6.75319 6.94906 7.12115 7.78742 8.43762 9.27966 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.003121 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.394645 B = 8969.407093 C = 9640.219819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.100 3.900 4 N -0.580 5.580 5 C 0.596 3.404 6 O -0.528 6.528 7 C -0.054 4.054 8 C -0.159 4.159 9 C 0.204 3.796 10 O -0.291 6.291 11 C 0.024 3.976 12 N -0.396 5.396 13 O 0.129 5.871 14 C 0.152 3.848 15 H 0.126 0.874 16 C -0.141 4.141 17 C 0.194 3.806 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.067 4.067 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.272 1.272 27 C 0.123 3.877 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.196 0.804 36 H 0.135 0.865 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.021 0.979 42 H -0.003 1.003 43 H 0.247 0.753 44 H 0.026 0.974 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.495 -0.793 16.547 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C -0.022 4.022 4 N -0.310 5.310 5 C 0.381 3.619 6 O -0.405 6.405 7 C -0.120 4.120 8 C -0.182 4.182 9 C 0.007 3.993 10 O -0.197 6.197 11 C -0.070 4.070 12 N -0.121 5.121 13 O 0.064 5.936 14 C 0.048 3.952 15 H 0.144 0.856 16 C -0.180 4.180 17 C 0.068 3.932 18 N -0.349 5.349 19 C -0.370 4.370 20 H 0.098 0.902 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.208 1.208 25 H -0.222 1.222 26 H -0.197 1.197 27 C -0.003 4.003 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.213 0.787 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.015 0.985 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.773 -0.921 16.837 26.756 hybrid contribution 1.753 -0.320 -0.389 1.824 sum -19.020 -1.241 16.448 25.177 Atomic orbital electron populations 1.21625 0.93190 1.02371 1.02704 1.21921 0.97778 0.95959 1.01983 1.22208 0.75967 0.98577 1.05408 1.47873 1.08325 1.70531 1.04316 1.16833 0.85711 0.77744 0.81613 1.90938 1.13704 1.50142 1.85675 1.23808 0.84972 1.06942 0.96314 1.22383 1.01473 1.05432 0.88863 1.21908 0.90119 1.00344 0.86910 1.86236 1.35680 1.87295 1.10532 1.23397 0.82472 1.01841 0.99332 1.73912 1.23023 1.24805 0.90340 1.85151 1.22285 1.66707 1.19498 1.22227 0.93070 0.95267 0.84648 0.85645 1.23087 0.97048 0.97679 1.00190 1.20791 0.93936 0.83223 0.95215 1.44612 1.39681 1.02543 1.48022 1.19431 1.10989 0.90155 1.16435 0.90171 1.25666 1.01418 0.97201 1.01672 1.70194 1.38974 1.09087 1.41777 0.85051 0.77795 0.77652 0.78660 1.20750 1.22160 1.19683 1.21939 0.89649 0.95568 0.93164 0.92351 0.91985 0.91380 0.91892 0.92984 0.88843 0.86980 0.78673 0.84658 0.91785 0.91996 0.89276 0.91611 0.96091 0.98457 0.94383 0.95672 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.14 -2.42 5.74 30.60 0.18 -2.24 16 3 C 0.10 1.81 4.94 86.38 0.43 2.23 16 4 N -0.58 -15.62 2.56 -793.86 -2.04 -17.66 16 5 C 0.60 18.28 6.92 86.69 0.60 18.88 16 6 O -0.53 -20.86 12.98 -3.99 -0.05 -20.91 16 7 C -0.05 -1.37 6.67 24.36 0.16 -1.21 16 8 C -0.16 -3.81 10.97 22.80 0.25 -3.56 16 9 C 0.20 4.60 8.00 85.78 0.69 5.29 16 10 O -0.29 -5.73 10.57 -90.59 -0.96 -6.68 16 11 C 0.02 0.28 10.73 113.37 1.22 1.49 16 12 N -0.40 -8.79 11.50 -172.02 -1.98 -10.77 16 13 O 0.13 2.83 6.52 65.58 0.43 3.26 16 14 C 0.15 5.06 3.54 46.38 0.16 5.23 16 15 H 0.13 3.61 7.89 -2.39 -0.02 3.59 16 16 C -0.14 -5.46 6.32 31.78 0.20 -5.25 16 17 C 0.19 10.04 5.37 86.73 0.47 10.50 16 18 N -0.62 -33.55 3.39 -691.98 -2.35 -35.90 16 19 C -0.24 -14.06 10.28 84.03 0.86 -13.19 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 21 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 22 N -0.95 -58.86 10.31 21.65 0.22 -58.64 16 23 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 C 0.12 5.33 6.58 86.85 0.57 5.90 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.05 6.66 -2.39 -0.02 1.04 16 33 H 0.09 1.54 5.78 -2.39 -0.01 1.53 16 34 H 0.11 1.57 7.94 -2.39 -0.02 1.55 16 35 H 0.20 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.07 2.71 6.07 -2.39 -0.01 2.70 16 41 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 42 H 0.00 -0.17 7.51 -2.38 -0.02 -0.19 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.03 1.21 5.72 -2.39 -0.01 1.19 16 45 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.06 362.60 3.27 -70.80 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.00 Total: 7.98 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.96 Total: 19.48 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.14 Total: -122.96 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.58 Total: -24.34 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.06 3.27 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753316515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.057 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds