Wall clock time and date at job start Tue Mar 31 2020 14:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46633 * 2 1 4 4 C 1.35348 * 116.99750 * 180.02562 * 3 2 1 5 5 N 1.30555 * 125.44900 * 180.02562 * 4 3 2 6 6 C 1.36325 * 108.38443 * 180.02562 * 5 4 3 7 7 C 1.47373 * 126.41025 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99727 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99770 * 0.02562 * 7 6 5 10 10 C 1.46508 * 119.99573 * 174.90260 * 9 7 6 11 11 C 1.52998 * 110.01736 * 65.17568 * 10 9 7 12 12 N 1.46505 * 109.47095 * 55.17937 * 11 10 9 13 13 C 1.36936 * 120.00319 * 174.90590 * 12 11 10 14 14 H 1.08002 * 119.99622 * 359.97438 * 13 12 11 15 15 C 1.38806 * 120.00103 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00159 * 359.72459 * 15 13 12 17 17 Si 1.86804 * 120.00025 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46816 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47357 * 119.99612 * 17 15 13 20 20 H 1.48503 * 109.47011 * 240.00249 * 17 15 13 21 21 C 1.54257 * 110.07216 * 186.59419 * 10 9 7 22 22 C 1.54886 * 104.19795 * 95.69526 * 21 10 9 23 23 C 1.54893 * 102.74625 * 37.94520 * 22 21 10 24 24 C 1.53874 * 110.03424 * 303.78619 * 10 9 7 25 25 C 1.35913 * 107.17659 * 0.22862 * 6 5 4 26 26 O 1.34209 * 125.44946 * 0.03822 * 4 3 2 27 27 H 1.09007 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47176 * 299.99881 * 1 2 3 29 29 H 1.08998 * 109.47654 * 60.00378 * 1 2 3 30 30 H 1.08993 * 109.46843 * 239.99980 * 2 1 3 31 31 H 1.08990 * 109.47043 * 119.99579 * 2 1 3 32 32 H 0.96993 * 120.00337 * 354.90796 * 9 7 6 33 33 H 1.09001 * 109.47584 * 295.18562 * 11 10 9 34 34 H 1.08990 * 109.47254 * 175.17847 * 11 10 9 35 35 H 0.97006 * 119.99747 * 354.90886 * 12 11 10 36 36 H 0.97007 * 120.00090 * 180.02562 * 16 15 13 37 37 H 1.08998 * 110.48720 * 214.37628 * 21 10 9 38 38 H 1.09008 * 110.49204 * 337.01953 * 21 10 9 39 39 H 1.08999 * 110.76039 * 279.62578 * 22 21 10 40 40 H 1.09003 * 110.76040 * 156.25627 * 22 21 10 41 41 H 1.08998 * 110.48461 * 203.37816 * 23 22 21 42 42 H 1.08995 * 110.48774 * 80.73388 * 23 22 21 43 43 H 1.09005 * 110.03083 * 359.94883 * 24 10 9 44 44 H 1.08996 * 110.03535 * 121.38106 * 24 10 9 45 45 H 1.08002 * 126.45777 * 179.75332 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 -0.0001 6 6 5.3037 2.4526 -0.0015 7 6 6.3628 3.4773 -0.0021 8 8 7.5323 3.1432 -0.0038 9 7 6.0355 4.7847 -0.0008 10 6 7.0837 5.8022 0.1113 11 6 7.9877 5.7609 -1.1223 12 7 7.1722 5.9077 -2.3306 13 6 7.7753 6.0052 -3.5561 14 1 8.8522 5.9743 -3.6319 15 6 7.0026 6.1449 -4.7007 16 7 5.6902 6.1782 -4.6087 17 14 7.8254 6.2772 -6.3726 18 1 9.2994 6.2074 -6.2058 19 1 7.3712 5.1590 -7.2377 20 1 7.4598 7.5710 -7.0032 21 6 6.4502 7.2012 0.2556 22 6 6.4230 7.4501 1.7840 23 6 7.7596 6.8257 2.2558 24 6 7.9163 5.5633 1.3831 25 6 5.4845 1.1055 -0.0079 26 8 4.2630 0.5429 -0.0018 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8899 32 1 5.1060 5.0520 -0.0740 33 1 8.5157 4.8078 -1.1542 34 1 8.7104 6.5751 -1.0706 35 1 6.2050 5.9360 -2.2624 36 1 5.1502 6.2755 -5.4087 37 1 7.0646 7.9514 -0.2422 38 1 5.4382 7.2056 -0.1497 39 1 5.5754 6.9414 2.2433 40 1 6.3976 8.5180 2.0012 41 1 7.7033 6.5558 3.3104 42 1 8.5855 7.5151 2.0811 43 1 7.5399 4.6910 1.9174 44 1 8.9643 5.4180 1.1214 45 1 6.4308 0.5850 -0.0143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753504988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:42 Heat of formation + Delta-G solvation = -64.447881 kcal Electronic energy + Delta-G solvation = -28044.751225 eV Core-core repulsion = 24063.728961 eV Total energy + Delta-G solvation = -3981.022263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.54262 -41.34958 -39.99564 -38.80399 -36.16269 -36.08302 -34.44812 -33.03557 -32.79680 -30.68572 -29.77726 -29.49360 -26.43652 -25.42447 -24.51493 -23.98714 -23.41627 -21.96071 -21.54898 -20.32982 -20.03571 -19.12200 -18.65112 -18.32785 -17.43664 -17.31405 -16.63762 -16.53348 -16.19393 -16.04471 -15.63258 -15.56688 -15.18942 -14.99968 -14.55789 -14.51678 -14.04965 -13.93088 -13.57589 -13.54065 -13.21799 -12.84224 -12.73766 -12.68105 -12.48092 -12.26633 -12.14591 -11.97816 -11.90166 -11.89925 -11.79862 -11.77076 -11.70862 -11.38071 -11.19833 -10.83796 -10.02772 -9.73246 -8.95111 -7.93902 -5.21310 0.03622 0.81536 0.94114 1.44379 1.45511 1.55788 1.66642 2.12658 2.29393 2.55568 3.31245 3.40753 3.55788 3.71734 3.73724 3.91699 3.93230 3.96058 4.08546 4.19437 4.25281 4.37554 4.42405 4.52966 4.56352 4.66495 4.69866 4.82970 4.83579 4.86157 4.89103 4.94221 5.11061 5.12049 5.17624 5.21044 5.26849 5.35983 5.47707 5.51345 5.62747 5.69560 6.27359 6.34666 6.62129 7.17757 7.34551 8.10343 8.36810 9.29437 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.004170 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.615198 B = 6712.356082 C = 8696.766372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.256 6.256 4 C 0.382 3.618 5 N -0.482 5.482 6 C -0.074 4.074 7 C 0.603 3.397 8 O -0.554 6.554 9 N -0.688 5.688 10 C 0.169 3.831 11 C 0.147 3.853 12 N -0.733 5.733 13 C -0.242 4.242 14 H 0.069 0.931 15 C -0.073 4.073 16 N -0.966 5.966 17 Si 0.971 3.029 18 H -0.269 1.269 19 H -0.295 1.295 20 H -0.289 1.289 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.111 4.111 25 C 0.022 3.978 26 O -0.215 6.215 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.407 0.593 33 H 0.015 0.985 34 H 0.030 0.970 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -10.877 17.153 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.165 6.165 4 C 0.136 3.864 5 N -0.229 5.229 6 C -0.192 4.192 7 C 0.389 3.611 8 O -0.434 6.434 9 N -0.338 5.338 10 C 0.084 3.916 11 C 0.020 3.980 12 N -0.376 5.376 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.265 4.265 16 N -0.617 5.617 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.222 1.222 20 H -0.216 1.216 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.051 4.051 26 O -0.105 6.105 27 H 0.132 0.868 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.243 0.757 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -6.771 -10.438 17.070 21.123 hybrid contribution -0.167 -0.654 -1.539 1.680 sum -6.938 -11.092 15.532 20.308 Atomic orbital electron populations 1.21864 0.89631 1.05140 1.03846 1.23461 0.98076 0.77770 1.04104 1.86422 1.07728 1.33375 1.89003 1.23336 0.84239 0.81460 0.97399 1.71012 1.04370 1.22968 1.24518 1.21698 0.90046 0.94953 1.12513 1.16806 0.86219 0.82235 0.75866 1.90769 1.18715 1.81847 1.52039 1.45881 1.10977 1.04681 1.72219 1.21329 0.87654 0.87933 0.94726 1.21234 0.93333 0.97622 0.85844 1.42353 1.05411 1.88176 1.01611 1.19630 0.91727 1.40305 0.85729 0.91325 1.25492 0.96025 1.03831 1.01179 1.69828 1.04348 1.59218 1.28345 0.85104 0.77991 0.76768 0.80100 1.19340 1.22246 1.21620 1.22546 1.00659 0.93855 0.98382 1.22498 0.97921 1.01793 0.92909 1.22372 0.97916 0.95606 0.99398 1.22354 0.99555 0.99209 0.93904 1.25505 0.86629 0.92112 1.00810 1.84398 1.15920 1.38501 1.71722 0.86834 0.91027 0.91664 0.90168 0.89285 0.75718 0.96702 0.95193 0.79310 0.94132 0.90752 0.91841 0.90997 0.89510 0.89805 0.90582 0.91959 0.91648 0.71834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.04 0.56 6.38 71.98 0.46 1.02 16 3 O -0.26 -6.15 10.19 -64.16 -0.65 -6.81 16 4 C 0.38 10.86 8.98 130.43 1.17 12.03 16 5 N -0.48 -16.42 11.10 -419.38 -4.66 -21.08 16 6 C -0.07 -2.49 6.99 40.31 0.28 -2.21 16 7 C 0.60 22.94 6.85 86.65 0.59 23.54 16 8 O -0.55 -22.98 14.15 -4.11 -0.06 -23.04 16 9 N -0.69 -25.25 4.50 -422.90 -1.90 -27.15 16 10 C 0.17 6.00 0.57 4.32 0.00 6.00 16 11 C 0.15 6.63 4.64 86.38 0.40 7.03 16 12 N -0.73 -39.65 5.27 -343.46 -1.81 -41.46 16 13 C -0.24 -14.36 9.99 84.03 0.84 -13.52 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 15 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 16 N -0.97 -61.19 13.06 21.65 0.28 -60.90 16 17 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 21 C -0.12 -3.65 5.74 31.66 0.18 -3.47 16 22 C -0.11 -2.61 6.91 31.89 0.22 -2.39 16 23 C -0.12 -2.59 6.83 31.67 0.22 -2.37 16 24 C -0.11 -3.32 5.22 31.32 0.16 -3.16 16 25 C 0.02 0.57 11.93 67.28 0.80 1.37 16 26 O -0.21 -5.23 10.20 18.86 0.19 -5.04 16 27 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.41 14.70 7.97 -92.71 -0.74 13.96 16 33 H 0.02 0.75 6.55 -2.39 -0.02 0.74 16 34 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 35 H 0.37 21.26 7.19 -92.70 -0.67 20.59 16 36 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 37 H 0.07 2.50 7.79 -2.39 -0.02 2.48 16 38 H 0.06 2.10 7.70 -2.38 -0.02 2.08 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.92 6.99 -2.38 -0.02 1.90 16 44 H 0.06 2.04 7.67 -2.39 -0.02 2.03 16 45 H 0.27 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -76.32 373.54 -0.42 -76.74 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.38 Total: 39.18 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.54 Total: 19.29 kcal Atomic # 7 Polarization: -142.51 SS G_CDS: -8.09 Total: -150.60 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.52 Total: -34.88 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -76.32 -0.42 -76.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753504988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.290 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds