Wall clock time and date at job start Tue Mar 31 2020 14:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35349 * 116.99945 * 2 1 4 4 N 1.30552 * 125.44093 * 179.97438 * 3 2 1 5 5 C 1.36336 * 108.38228 * 180.02562 * 4 3 2 6 6 C 1.47363 * 126.41235 * 179.97438 * 5 4 3 7 7 O 1.21625 * 120.00011 * 173.09191 * 6 5 4 8 8 N 1.34776 * 120.00261 * 353.08028 * 6 5 4 9 9 C 1.46927 * 120.63174 * 352.84902 * 8 6 5 10 10 C 1.53189 * 108.77367 * 233.58415 * 9 8 6 11 11 C 1.53042 * 109.31149 * 305.36277 * 10 9 8 12 12 C 1.53038 * 109.53007 * 61.37002 * 11 10 9 13 13 H 1.09002 * 109.49270 * 58.58271 * 12 11 10 14 14 C 1.52998 * 109.49645 * 178.67490 * 12 11 10 15 15 H 1.08999 * 109.47468 * 304.99998 * 14 12 11 16 16 C 1.52994 * 109.46994 * 65.00583 * 14 12 11 17 17 N 1.46498 * 109.46967 * 185.00186 * 14 12 11 18 18 C 1.36938 * 120.00388 * 155.00173 * 17 14 12 19 19 H 1.07996 * 119.99784 * 0.02562 * 18 17 14 20 20 C 1.38810 * 120.00294 * 179.97438 * 18 17 14 21 21 N 1.31622 * 120.00247 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47145 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47035 * 120.00352 * 22 20 18 25 25 H 1.48499 * 109.47193 * 240.00390 * 22 20 18 26 26 C 1.46922 * 120.63079 * 172.81886 * 8 6 5 27 27 C 1.35923 * 107.17051 * 0.22438 * 5 4 3 28 28 O 1.34197 * 125.44957 * 0.03877 * 3 2 1 29 29 H 1.08996 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46936 * 300.00093 * 1 2 3 31 31 H 1.09003 * 109.46662 * 60.00037 * 1 2 3 32 32 H 1.08994 * 109.59137 * 113.79226 * 9 8 6 33 33 H 1.09006 * 109.58094 * 353.36819 * 9 8 6 34 34 H 1.09002 * 109.49923 * 185.41061 * 10 9 8 35 35 H 1.08998 * 109.50143 * 65.30970 * 10 9 8 36 36 H 1.09005 * 109.45690 * 181.39009 * 11 10 9 37 37 H 1.09004 * 109.45873 * 301.35635 * 11 10 9 38 38 H 1.09000 * 109.47333 * 179.97438 * 16 14 12 39 39 H 1.09001 * 109.47533 * 299.99672 * 16 14 12 40 40 H 1.09009 * 109.47430 * 59.99447 * 16 14 12 41 41 H 0.97008 * 120.00033 * 335.00346 * 17 14 12 42 42 H 0.96998 * 120.00070 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58899 * 246.20426 * 26 8 6 44 44 H 1.09007 * 109.58716 * 6.62849 * 26 8 6 45 45 H 1.07999 * 126.44830 * 179.74925 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 0.0009 6 6 4.8893 3.3974 0.0020 7 8 4.9677 4.6045 -0.1244 8 7 6.0090 2.6606 0.1434 9 6 5.9274 1.2266 0.4530 10 6 6.7770 0.9414 1.6953 11 6 8.2002 1.4545 1.4639 12 6 8.1680 2.9677 1.2378 13 1 7.7209 3.4555 2.1040 14 6 9.5942 3.4848 1.0394 15 1 10.2106 3.1853 1.8870 16 6 10.1758 2.8959 -0.2474 17 7 9.5746 4.9464 0.9422 18 6 10.6900 5.6696 1.2709 19 1 11.5844 5.1624 1.6014 20 6 10.6716 7.0545 1.1783 21 7 9.5818 7.6727 0.7750 22 14 12.1930 8.0409 1.6274 23 1 13.2762 7.1162 2.0480 24 1 12.6414 8.8238 0.4478 25 1 11.8712 8.9669 2.7428 26 6 7.3343 3.2759 -0.0099 27 6 2.3603 3.3599 0.0057 28 8 1.4228 2.3958 0.0007 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 6.3067 0.6486 -0.3897 33 1 4.8904 0.9536 0.6489 34 1 6.8030 -0.1326 1.8797 35 1 6.3432 1.4485 2.5571 36 1 8.8133 1.2306 2.3370 37 1 8.6245 0.9652 0.5872 38 1 11.1917 3.2646 -0.3890 39 1 10.1904 1.8084 -0.1752 40 1 9.5594 3.1954 -1.0951 41 1 8.7714 5.4020 0.6450 42 1 9.5688 8.6404 0.7107 43 1 7.8284 2.8650 -0.8903 44 1 7.2258 4.3550 -0.1194 45 1 2.1851 4.4256 0.0111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753797022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:58 Heat of formation + Delta-G solvation = -43.105303 kcal Electronic energy + Delta-G solvation = -28016.484329 eV Core-core repulsion = 24036.387549 eV Total energy + Delta-G solvation = -3980.096780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.60142 -41.27271 -39.81187 -39.14441 -37.00747 -36.10895 -34.54412 -33.20337 -31.56846 -31.12303 -29.40519 -28.30252 -27.08638 -26.26926 -24.75337 -24.49449 -23.45279 -22.35218 -21.32546 -20.11741 -19.35634 -19.14050 -18.62080 -18.31387 -17.47407 -17.06219 -16.71790 -16.35529 -16.30830 -15.92812 -15.79598 -15.47932 -15.30576 -15.19204 -14.54526 -14.39276 -14.20666 -13.96466 -13.91112 -13.33127 -13.08533 -13.03918 -12.91738 -12.85958 -12.67657 -12.53400 -12.14709 -12.10438 -11.94910 -11.79848 -11.77517 -11.50221 -11.47065 -11.19563 -10.94205 -10.71206 -9.89288 -9.54822 -8.98396 -7.90097 -5.19344 -0.00848 0.84168 0.87355 1.46301 1.47895 1.57807 1.63333 1.95475 2.13291 2.57756 3.19740 3.42469 3.72023 3.74035 3.90576 3.98177 4.01210 4.13881 4.19642 4.21651 4.27329 4.32712 4.39224 4.45451 4.54968 4.64549 4.68163 4.72405 4.76302 4.86406 4.92733 5.08641 5.11918 5.14810 5.16645 5.26776 5.37848 5.46988 5.53555 5.57141 5.69625 5.74616 6.25069 6.31266 6.46412 6.99542 7.36114 8.14427 8.36237 9.33652 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.002858 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.960620 B = 9794.861693 C =10763.688040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.251 6.251 3 C 0.386 3.614 4 N -0.471 5.471 5 C -0.069 4.069 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.591 5.591 9 C 0.079 3.921 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.091 4.091 13 H 0.045 0.955 14 C 0.174 3.826 15 H 0.048 0.952 16 C -0.158 4.158 17 N -0.741 5.741 18 C -0.233 4.233 19 H 0.078 0.922 20 C -0.083 4.083 21 N -0.973 5.973 22 Si 0.973 3.027 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.296 1.296 26 C 0.123 3.877 27 C 0.029 3.971 28 O -0.213 6.213 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.370 0.630 42 H 0.248 0.752 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 -21.904 -1.125 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.159 6.159 3 C 0.140 3.860 4 N -0.218 5.218 5 C -0.186 4.186 6 C 0.376 3.624 7 O -0.454 6.454 8 N -0.321 5.321 9 C -0.042 4.042 10 C -0.164 4.164 11 C -0.145 4.145 12 C -0.111 4.111 13 H 0.063 0.937 14 C 0.065 3.935 15 H 0.066 0.934 16 C -0.218 4.218 17 N -0.381 5.381 18 C -0.365 4.365 19 H 0.096 0.904 20 C -0.275 4.275 21 N -0.624 5.624 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.223 1.223 26 C 0.001 3.999 27 C -0.044 4.044 28 O -0.104 6.104 29 H 0.165 0.835 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.202 0.798 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -19.699 -22.027 -1.125 29.572 hybrid contribution -0.071 2.036 0.021 2.037 sum -19.770 -19.992 -1.103 28.138 Atomic orbital electron populations 1.23720 0.72628 1.07852 1.03878 1.86427 1.26105 1.14594 1.88780 1.23779 0.85692 0.80267 0.96274 1.70910 1.10052 1.14993 1.25818 1.21349 0.95159 0.88985 1.13085 1.17219 0.83140 0.85420 0.76670 1.90873 1.86871 1.14753 1.52916 1.48065 1.04877 1.11473 1.67657 1.22794 1.05558 0.77912 0.97905 1.21907 0.94691 1.02699 0.97081 1.21610 0.97519 0.92224 1.03191 1.21595 0.95040 0.97958 0.96485 0.93672 1.20452 0.93780 0.82910 0.96340 0.93368 1.22405 1.00135 1.00632 0.98581 1.42777 1.13548 1.01689 1.80084 1.19689 0.92670 0.89330 1.34826 0.90392 1.25604 1.00256 0.97887 1.03706 1.69876 1.29031 1.07751 1.55734 0.85071 0.79337 0.78622 0.76739 1.18737 1.22278 1.22337 1.21659 0.81537 0.98122 0.98611 1.25430 0.83997 0.94707 1.00258 1.84426 1.38853 1.15540 1.71567 0.83453 0.90531 0.90592 0.90530 0.84601 0.87650 0.93108 0.90629 0.89851 0.94578 0.90196 0.93800 0.79804 0.94282 0.89877 0.92692 0.72417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.73 113.37 1.22 1.27 16 2 O -0.25 -3.57 10.55 -64.18 -0.68 -4.24 16 3 C 0.39 7.38 8.98 130.43 1.17 8.55 16 4 N -0.47 -11.35 7.87 -419.39 -3.30 -14.65 16 5 C -0.07 -1.84 6.66 40.31 0.27 -1.58 16 6 C 0.59 20.51 7.67 86.65 0.66 21.18 16 7 O -0.57 -24.72 16.32 -4.11 -0.07 -24.78 16 8 N -0.59 -19.14 2.97 -822.85 -2.45 -21.59 16 9 C 0.08 1.96 6.10 86.36 0.53 2.48 16 10 C -0.13 -2.76 6.08 30.67 0.19 -2.57 16 11 C -0.11 -2.67 4.89 30.62 0.15 -2.52 16 12 C -0.09 -3.16 2.27 -10.72 -0.02 -3.19 16 13 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 14 C 0.17 7.01 2.67 44.99 0.12 7.13 16 15 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 16 C -0.16 -5.56 8.76 71.98 0.63 -4.93 16 17 N -0.74 -39.37 5.06 -322.96 -1.63 -41.01 16 18 C -0.23 -13.46 9.93 84.03 0.83 -12.63 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 21 N -0.97 -63.34 13.06 21.65 0.28 -63.05 16 22 Si 0.97 48.21 29.55 68.60 2.03 50.24 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 26 C 0.12 4.50 5.19 86.36 0.45 4.95 16 27 C 0.03 0.58 11.94 67.28 0.80 1.38 16 28 O -0.21 -3.66 10.20 18.95 0.19 -3.46 16 29 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.14 3.34 4.11 -18.85 -0.08 3.26 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.08 1.82 6.63 -2.38 -0.02 1.80 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 2.15 6.60 -2.39 -0.02 2.14 16 40 H 0.04 1.58 6.23 -2.38 -0.01 1.57 16 41 H 0.37 21.75 6.48 -92.70 -0.60 21.15 16 42 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.08 2.83 6.06 -2.39 -0.01 2.81 16 44 H 0.05 2.53 5.82 -2.38 -0.01 2.52 16 45 H 0.26 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -79.21 361.75 2.20 -77.01 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.36 Total: 30.53 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 7.46 Total: 15.02 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -7.10 Total: -140.30 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.55 Total: -32.49 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -79.21 2.20 -77.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.904 kcal (2) G-P(sol) polarization free energy of solvation -79.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds