Wall clock time and date at job start Tue Mar 31 2020 14:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35360 * 117.00135 * 2 1 4 4 N 1.30549 * 125.44764 * 179.97438 * 3 2 1 5 5 C 1.36329 * 108.38180 * 179.97438 * 4 3 2 6 6 C 1.47364 * 126.41361 * 180.02562 * 5 4 3 7 7 O 1.21626 * 120.00342 * 187.16019 * 6 5 4 8 8 N 1.34780 * 119.99936 * 7.15527 * 6 5 4 9 9 C 1.46926 * 120.62946 * 7.20084 * 8 6 5 10 10 C 1.53198 * 108.77378 * 126.37032 * 9 8 6 11 11 C 1.53037 * 109.31245 * 54.63201 * 10 9 8 12 12 C 1.53040 * 109.54312 * 298.63982 * 11 10 9 13 13 H 1.09005 * 109.48995 * 301.41286 * 12 11 10 14 14 C 1.53000 * 109.49780 * 181.31758 * 12 11 10 15 15 H 1.08996 * 109.47052 * 299.99328 * 14 12 11 16 16 C 1.52995 * 109.47301 * 59.99892 * 14 12 11 17 17 N 1.46505 * 109.46657 * 179.97438 * 14 12 11 18 18 C 1.36935 * 119.99537 * 154.99806 * 17 14 12 19 19 H 1.07998 * 120.00372 * 0.02562 * 18 17 14 20 20 C 1.38815 * 119.99649 * 179.97438 * 18 17 14 21 21 N 1.31624 * 120.00101 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99874 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47117 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46719 * 120.00586 * 22 20 18 25 25 H 1.48504 * 109.46946 * 240.00492 * 22 20 18 26 26 C 1.46927 * 120.62883 * 186.92287 * 8 6 5 27 27 C 1.35917 * 107.17580 * 359.97438 * 5 4 3 28 28 O 1.34198 * 125.44038 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.46603 * 60.00429 * 1 2 3 30 30 H 1.08997 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46887 * 300.00028 * 1 2 3 32 32 H 1.09002 * 109.58752 * 246.15678 * 9 8 6 33 33 H 1.08996 * 109.58448 * 6.44453 * 9 8 6 34 34 H 1.09000 * 109.49830 * 174.58655 * 10 9 8 35 35 H 1.09001 * 109.49566 * 294.64930 * 10 9 8 36 36 H 1.09002 * 109.45586 * 58.65605 * 11 10 9 37 37 H 1.09000 * 109.46234 * 178.60926 * 11 10 9 38 38 H 1.08996 * 109.47528 * 59.99728 * 16 14 12 39 39 H 1.08998 * 109.47377 * 180.02562 * 16 14 12 40 40 H 1.09008 * 109.47066 * 299.99790 * 16 14 12 41 41 H 0.96999 * 120.00224 * 334.99588 * 17 14 12 42 42 H 0.96999 * 120.00072 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.58771 * 353.41865 * 26 8 6 44 44 H 1.08999 * 109.58654 * 113.84433 * 26 8 6 45 45 H 1.07999 * 126.45924 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 3.3349 1.3978 0.0005 5 6 3.5701 2.7406 -0.0003 6 6 4.8892 3.3977 -0.0006 7 8 4.9676 4.6044 0.1300 8 7 6.0087 2.6614 -0.1456 9 6 5.9269 1.2287 -0.4609 10 6 6.7749 0.9485 -1.7056 11 6 8.1982 1.4609 -1.4741 12 6 8.1665 2.9732 -1.2416 13 1 7.7181 3.4646 -2.1052 14 6 9.5930 3.4894 -1.0430 15 1 10.0399 2.9986 -0.1785 16 6 10.4246 3.1829 -2.2900 17 7 9.5618 4.9372 -0.8211 18 6 10.5772 5.5464 -0.1333 19 1 11.4011 4.9597 0.2453 20 6 10.5480 6.9183 0.0766 21 7 9.5441 7.6335 -0.3852 22 14 11.9327 7.7493 1.0155 23 1 12.9331 6.7314 1.4256 24 1 12.5842 8.7603 0.1445 25 1 11.3817 8.4168 2.2222 26 6 7.3343 3.2775 0.0027 27 6 2.3603 3.3601 -0.0018 28 8 1.4227 2.3958 -0.0005 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 6.3074 0.6474 0.3790 33 1 4.8894 0.9558 -0.6540 34 1 6.8007 -0.1247 -1.8942 35 1 6.3393 1.4586 -2.5648 36 1 8.6239 0.9681 -0.6000 37 1 8.8102 1.2407 -2.3488 38 1 9.9777 3.6737 -3.1545 39 1 11.4410 3.5502 -2.1484 40 1 10.4478 2.1057 -2.4556 41 1 8.8220 5.4643 -1.1614 42 1 9.5234 8.5920 -0.2383 43 1 7.2255 4.3564 0.1130 44 1 7.8320 2.8667 0.8811 45 1 2.1849 4.4257 -0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753797023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:01 Heat of formation + Delta-G solvation = -18.975666 kcal Electronic energy + Delta-G solvation = -27985.568016 eV Core-core repulsion = 24006.517576 eV Total energy + Delta-G solvation = -3979.050440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73466 -39.93617 -39.16174 -37.66827 -35.56542 -34.99265 -32.79947 -31.63895 -30.46855 -29.69108 -28.16703 -27.86702 -25.64921 -24.44980 -23.26192 -23.10286 -22.32887 -21.05883 -20.00552 -19.41677 -18.26630 -17.83658 -17.33514 -16.90961 -16.70168 -15.70068 -15.59544 -15.56334 -14.93896 -14.77995 -14.27807 -14.07168 -13.74278 -13.51970 -13.44363 -12.94110 -12.78930 -12.74618 -12.67184 -12.36799 -12.25478 -11.96838 -11.43955 -11.30277 -11.14198 -10.90765 -10.79830 -10.64926 -10.61843 -10.17992 -10.15934 -10.06358 -9.86774 -9.56311 -9.43663 -8.97622 -8.82297 -8.30035 -6.84680 -5.65127 -2.94034 0.93166 1.58509 1.81297 2.43534 3.12048 3.33490 3.50006 3.55143 3.57675 4.19607 4.42392 4.50897 4.65509 4.66868 4.78456 4.94056 5.05702 5.16785 5.21834 5.23836 5.36288 5.46839 5.59588 5.67725 5.85035 5.91112 5.96833 5.99954 6.12586 6.14224 6.26981 6.30635 6.34472 6.46931 6.52665 6.57894 6.66147 6.81288 6.89005 7.00954 7.19024 7.21503 7.64413 7.80245 8.29667 8.52561 9.63706 10.22220 10.56846 11.57183 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002982 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.364016 B = 9387.687008 C =10507.009063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.245 6.245 3 C 0.376 3.624 4 N -0.451 5.451 5 C -0.038 4.038 6 C 0.593 3.407 7 O -0.524 6.524 8 N -0.590 5.590 9 C 0.081 3.919 10 C -0.132 4.132 11 C -0.116 4.116 12 C -0.102 4.102 13 H 0.069 0.931 14 C 0.180 3.820 15 H 0.047 0.953 16 C -0.164 4.164 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.929 5.929 22 Si 0.903 3.097 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.122 3.878 27 C 0.002 3.998 28 O -0.226 6.226 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.415 -18.453 -1.368 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.153 6.153 3 C 0.131 3.869 4 N -0.198 5.198 5 C -0.156 4.156 6 C 0.379 3.621 7 O -0.400 6.400 8 N -0.321 5.321 9 C -0.042 4.042 10 C -0.170 4.170 11 C -0.154 4.154 12 C -0.122 4.122 13 H 0.088 0.912 14 C 0.070 3.930 15 H 0.065 0.935 16 C -0.224 4.224 17 N -0.366 5.366 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.577 5.577 22 Si 0.735 3.265 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.000 4.000 27 C -0.070 4.070 28 O -0.117 6.117 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.126 0.874 44 H 0.085 0.915 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.793 -18.486 -1.170 26.387 hybrid contribution -0.161 1.166 0.333 1.223 sum -18.953 -17.320 -0.837 25.689 Atomic orbital electron populations 1.23302 0.75153 1.05626 1.03050 1.86383 1.23648 1.16018 1.89252 1.23714 0.85913 0.79532 0.97755 1.71093 1.08658 1.15662 1.24338 1.21839 0.96121 0.88027 1.09625 1.16762 0.81781 0.85809 0.77725 1.90914 1.85921 1.12696 1.50462 1.47974 1.05923 1.10243 1.68010 1.22561 1.04643 0.80075 0.96897 1.21918 0.96230 1.00792 0.98089 1.21649 0.96045 0.95695 1.01971 1.21671 0.97368 0.95170 0.98006 0.91224 1.20177 0.90961 0.86644 0.95247 0.93507 1.22473 1.01350 0.98546 1.00043 1.42470 1.26663 1.01076 1.66375 1.19244 1.00130 0.90569 1.26762 0.91258 1.24734 0.98127 0.96468 1.01647 1.69683 1.31370 1.05894 1.50794 0.86176 0.81575 0.79469 0.79328 1.20664 1.22048 1.21969 1.21686 0.79772 1.01053 0.97443 1.25005 0.84785 0.93792 1.03413 1.84381 1.39565 1.15838 1.71927 0.91379 0.86321 0.91392 0.91924 0.85188 0.91156 0.92017 0.91944 0.91397 0.93632 0.92936 0.94272 0.78159 0.93644 0.87431 0.91547 0.74627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.73 101.05 1.08 1.17 16 2 O -0.25 -2.07 10.55 -41.00 -0.43 -2.50 16 3 C 0.38 4.01 8.98 52.22 0.47 4.48 16 4 N -0.45 -5.79 7.87 -11.72 -0.09 -5.88 16 5 C -0.04 -0.52 6.66 -82.99 -0.55 -1.07 16 6 C 0.59 10.16 7.67 -12.55 -0.10 10.06 16 7 O -0.52 -10.78 16.32 5.25 0.09 -10.69 16 8 N -0.59 -9.62 2.98 -174.32 -0.52 -10.14 16 9 C 0.08 1.08 6.10 -3.71 -0.02 1.05 16 10 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 11 C -0.12 -1.57 4.85 -26.69 -0.13 -1.70 16 12 C -0.10 -1.75 1.96 -90.72 -0.18 -1.93 16 13 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.18 3.60 2.48 -67.93 -0.17 3.44 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 C -0.16 -3.01 9.14 37.16 0.34 -2.67 16 17 N -0.72 -18.39 4.52 -53.43 -0.24 -18.63 16 18 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 22 Si 0.90 22.96 29.55 -169.99 -5.02 17.94 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 26 C 0.12 2.23 5.46 -3.93 -0.02 2.21 16 27 C 0.00 0.02 11.94 29.90 0.36 0.38 16 28 O -0.23 -2.20 10.20 -17.77 -0.18 -2.38 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.12 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.13 1.72 4.11 -60.08 -0.25 1.47 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.88 6.36 -51.93 -0.33 0.54 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.59 6.40 -51.92 -0.33 0.26 16 41 H 0.38 10.61 7.61 -40.82 -0.31 10.30 16 42 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.11 2.41 6.50 -51.93 -0.34 2.07 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.24 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -34.33 366.68 -6.08 -40.40 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.60 Total: 8.18 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 0.67 Total: 6.37 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.13 Total: -62.85 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.53 Total: -15.57 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.33 -6.08 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.428 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds