Wall clock time and date at job start Tue Mar 31 2020 14:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35360 * 117.00135 * 2 1 4 4 N 1.30549 * 125.44764 * 179.97438 * 3 2 1 5 5 C 1.36329 * 108.38180 * 179.97438 * 4 3 2 6 6 C 1.47364 * 126.41361 * 180.02562 * 5 4 3 7 7 O 1.21626 * 120.00342 * 187.16019 * 6 5 4 8 8 N 1.34780 * 119.99936 * 7.15527 * 6 5 4 9 9 C 1.46926 * 120.62946 * 7.20084 * 8 6 5 10 10 C 1.53198 * 108.77378 * 126.37032 * 9 8 6 11 11 C 1.53037 * 109.31245 * 54.63201 * 10 9 8 12 12 C 1.53040 * 109.54312 * 298.63982 * 11 10 9 13 13 H 1.09005 * 109.48995 * 301.41286 * 12 11 10 14 14 C 1.53000 * 109.49780 * 181.31758 * 12 11 10 15 15 H 1.08996 * 109.47052 * 299.99328 * 14 12 11 16 16 C 1.52995 * 109.47301 * 59.99892 * 14 12 11 17 17 N 1.46505 * 109.46657 * 179.97438 * 14 12 11 18 18 C 1.36935 * 119.99537 * 154.99806 * 17 14 12 19 19 H 1.07998 * 120.00372 * 0.02562 * 18 17 14 20 20 C 1.38815 * 119.99649 * 179.97438 * 18 17 14 21 21 N 1.31624 * 120.00101 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99874 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47117 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46719 * 120.00586 * 22 20 18 25 25 H 1.48504 * 109.46946 * 240.00492 * 22 20 18 26 26 C 1.46927 * 120.62883 * 186.92287 * 8 6 5 27 27 C 1.35917 * 107.17580 * 359.97438 * 5 4 3 28 28 O 1.34198 * 125.44038 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.46603 * 60.00429 * 1 2 3 30 30 H 1.08997 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46887 * 300.00028 * 1 2 3 32 32 H 1.09002 * 109.58752 * 246.15678 * 9 8 6 33 33 H 1.08996 * 109.58448 * 6.44453 * 9 8 6 34 34 H 1.09000 * 109.49830 * 174.58655 * 10 9 8 35 35 H 1.09001 * 109.49566 * 294.64930 * 10 9 8 36 36 H 1.09002 * 109.45586 * 58.65605 * 11 10 9 37 37 H 1.09000 * 109.46234 * 178.60926 * 11 10 9 38 38 H 1.08996 * 109.47528 * 59.99728 * 16 14 12 39 39 H 1.08998 * 109.47377 * 180.02562 * 16 14 12 40 40 H 1.09008 * 109.47066 * 299.99790 * 16 14 12 41 41 H 0.96999 * 120.00224 * 334.99588 * 17 14 12 42 42 H 0.96999 * 120.00072 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.58771 * 353.41865 * 26 8 6 44 44 H 1.08999 * 109.58654 * 113.84433 * 26 8 6 45 45 H 1.07999 * 126.45924 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 3.3349 1.3978 0.0005 5 6 3.5701 2.7406 -0.0003 6 6 4.8892 3.3977 -0.0006 7 8 4.9676 4.6044 0.1300 8 7 6.0087 2.6614 -0.1456 9 6 5.9269 1.2287 -0.4609 10 6 6.7749 0.9485 -1.7056 11 6 8.1982 1.4609 -1.4741 12 6 8.1665 2.9732 -1.2416 13 1 7.7181 3.4646 -2.1052 14 6 9.5930 3.4894 -1.0430 15 1 10.0399 2.9986 -0.1785 16 6 10.4246 3.1829 -2.2900 17 7 9.5618 4.9372 -0.8211 18 6 10.5772 5.5464 -0.1333 19 1 11.4011 4.9597 0.2453 20 6 10.5480 6.9183 0.0766 21 7 9.5441 7.6335 -0.3852 22 14 11.9327 7.7493 1.0155 23 1 12.9331 6.7314 1.4256 24 1 12.5842 8.7603 0.1445 25 1 11.3817 8.4168 2.2222 26 6 7.3343 3.2775 0.0027 27 6 2.3603 3.3601 -0.0018 28 8 1.4227 2.3958 -0.0005 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 6.3074 0.6474 0.3790 33 1 4.8894 0.9558 -0.6540 34 1 6.8007 -0.1247 -1.8942 35 1 6.3393 1.4586 -2.5648 36 1 8.6239 0.9681 -0.6000 37 1 8.8102 1.2407 -2.3488 38 1 9.9777 3.6737 -3.1545 39 1 11.4410 3.5502 -2.1484 40 1 10.4478 2.1057 -2.4556 41 1 8.8220 5.4643 -1.1614 42 1 9.5234 8.5920 -0.2383 43 1 7.2255 4.3564 0.1130 44 1 7.8320 2.8667 0.8811 45 1 2.1849 4.4257 -0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753797023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:01 Heat of formation + Delta-G solvation = -44.797250 kcal Electronic energy + Delta-G solvation = -27986.687724 eV Core-core repulsion = 24006.517576 eV Total energy + Delta-G solvation = -3980.170148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.60370 -41.22408 -39.80582 -39.08017 -37.01774 -36.11865 -34.54599 -33.12283 -31.59099 -31.10076 -29.83814 -28.30333 -26.88140 -26.13135 -24.78828 -24.17981 -23.32065 -22.30588 -21.22833 -20.78004 -19.25792 -19.12205 -18.62480 -18.32168 -17.47354 -16.98690 -16.71118 -16.47820 -16.29706 -15.96829 -15.57729 -15.51803 -15.33002 -14.98528 -14.52780 -14.30338 -14.23750 -14.04141 -13.81962 -13.45132 -13.08791 -13.01823 -12.95647 -12.80522 -12.61474 -12.39015 -12.22547 -12.10647 -12.06289 -11.91226 -11.70744 -11.48225 -11.45030 -11.19513 -10.95409 -10.69184 -9.90046 -9.57051 -8.96035 -7.88970 -5.17362 -0.00958 0.84089 0.86998 1.46527 1.47977 1.57629 1.63231 1.95952 2.13228 2.58433 3.20211 3.44223 3.71763 3.73604 3.89339 3.98122 4.03280 4.17837 4.20428 4.22676 4.27273 4.34078 4.38595 4.48860 4.56873 4.62894 4.68028 4.78759 4.81362 4.88859 4.94663 5.05218 5.08399 5.15962 5.16362 5.29881 5.39026 5.51168 5.54403 5.58012 5.64567 5.75004 6.25697 6.32204 6.46908 7.00214 7.37390 8.15094 8.37366 9.34808 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002982 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.364016 B = 9387.687008 C =10507.009063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.251 6.251 3 C 0.386 3.614 4 N -0.471 5.471 5 C -0.068 4.068 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.591 5.591 9 C 0.078 3.922 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.089 4.089 13 H 0.051 0.949 14 C 0.174 3.826 15 H 0.048 0.952 16 C -0.153 4.153 17 N -0.737 5.737 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.971 5.971 22 Si 0.969 3.031 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.298 1.298 26 C 0.129 3.871 27 C 0.029 3.971 28 O -0.213 6.213 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.368 0.632 42 H 0.248 0.752 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.165 -21.605 -1.559 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.159 6.159 3 C 0.140 3.860 4 N -0.218 5.218 5 C -0.186 4.186 6 C 0.375 3.625 7 O -0.454 6.454 8 N -0.321 5.321 9 C -0.043 4.043 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.109 4.109 13 H 0.069 0.931 14 C 0.065 3.935 15 H 0.066 0.934 16 C -0.213 4.213 17 N -0.377 5.377 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.799 3.201 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.225 1.225 26 C 0.007 3.993 27 C -0.044 4.044 28 O -0.104 6.104 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.200 0.800 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -19.531 -21.750 -1.371 29.264 hybrid contribution -0.077 1.997 0.399 2.038 sum -19.608 -19.753 -0.972 27.850 Atomic orbital electron populations 1.23720 0.72620 1.07852 1.03884 1.86430 1.26114 1.14577 1.88786 1.23774 0.85680 0.80276 0.96260 1.70908 1.10091 1.15011 1.25826 1.21343 0.95147 0.88979 1.13085 1.17223 0.83132 0.85415 0.76683 1.90878 1.86865 1.14825 1.52846 1.48070 1.04917 1.11512 1.67588 1.22794 1.05617 0.77974 0.97888 1.21903 0.94655 1.02742 0.96987 1.21628 0.97578 0.92190 1.03221 1.21516 0.94949 0.98011 0.96441 0.93080 1.20455 0.93185 0.83694 0.96138 0.93373 1.22315 0.99552 1.01092 0.98340 1.42693 1.25536 1.03321 1.66117 1.19645 1.00304 0.90836 1.25368 0.90455 1.25560 1.00724 0.97417 1.03623 1.69863 1.33677 1.05647 1.53085 0.85117 0.78995 0.78435 0.77526 1.18748 1.22287 1.22518 1.21367 0.81428 0.98304 0.98212 1.25428 0.83978 0.94701 1.00259 1.84428 1.38830 1.15529 1.71576 0.90482 0.83451 0.90628 0.90969 0.84573 0.87687 0.92731 0.90697 0.89747 0.94470 0.94559 0.90165 0.80020 0.94363 0.92375 0.91510 0.72406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.73 113.37 1.22 1.28 16 2 O -0.25 -3.63 10.55 -64.29 -0.68 -4.31 16 3 C 0.39 7.50 8.98 130.43 1.17 8.68 16 4 N -0.47 -11.58 7.87 -419.39 -3.30 -14.89 16 5 C -0.07 -1.87 6.66 40.31 0.27 -1.60 16 6 C 0.59 20.97 7.67 86.64 0.66 21.64 16 7 O -0.57 -25.28 16.32 -4.11 -0.07 -25.35 16 8 N -0.59 -19.70 2.98 -823.66 -2.45 -22.15 16 9 C 0.08 1.98 6.10 86.36 0.53 2.51 16 10 C -0.12 -2.71 6.08 30.67 0.19 -2.52 16 11 C -0.11 -2.66 4.85 30.62 0.15 -2.51 16 12 C -0.09 -3.07 1.96 -10.86 -0.02 -3.09 16 13 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 14 C 0.17 6.95 2.48 44.99 0.11 7.06 16 15 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 16 C -0.15 -5.42 9.14 71.98 0.66 -4.76 16 17 N -0.74 -38.69 4.52 -322.94 -1.46 -40.15 16 18 C -0.23 -13.14 9.93 84.03 0.83 -12.30 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 21 N -0.97 -62.99 13.06 21.65 0.28 -62.71 16 22 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 23 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 25 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 26 C 0.13 4.95 5.46 86.22 0.47 5.42 16 27 C 0.03 0.60 11.94 67.28 0.80 1.40 16 28 O -0.21 -3.71 10.20 18.85 0.19 -3.52 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.24 16 30 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.14 3.41 4.11 -18.49 -0.08 3.33 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.84 6.36 -2.39 -0.02 1.82 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 2.17 6.40 -2.38 -0.02 2.15 16 41 H 0.37 21.52 7.61 -92.71 -0.71 20.81 16 42 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.06 2.82 6.50 -2.39 -0.02 2.81 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.26 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -78.58 366.68 2.29 -76.29 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.24 Total: 29.76 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 7.51 Total: 16.76 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -6.93 Total: -139.90 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.55 Total: -33.18 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -78.58 2.29 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.494 kcal (2) G-P(sol) polarization free energy of solvation -78.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds