Wall clock time and date at job start Tue Mar 31 2020 14:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35353 * 117.00425 * 2 1 4 4 N 1.30549 * 125.45184 * 179.97438 * 3 2 1 5 5 C 1.36328 * 108.38806 * 179.97438 * 4 3 2 6 6 C 1.47366 * 126.41442 * 180.02562 * 5 4 3 7 7 O 1.21618 * 119.99840 * 186.55164 * 6 5 4 8 8 N 1.34773 * 120.00057 * 6.54292 * 6 5 4 9 9 C 1.46932 * 120.63048 * 6.36719 * 8 6 5 10 10 C 1.53187 * 108.77323 * 233.58205 * 9 8 6 11 11 C 1.53039 * 109.31345 * 305.36211 * 10 9 8 12 12 C 1.53041 * 109.54015 * 61.36770 * 11 10 9 13 13 H 1.08999 * 109.49371 * 58.61692 * 12 11 10 14 14 C 1.52999 * 109.50231 * 178.68321 * 12 11 10 15 15 H 1.08999 * 109.46960 * 60.00065 * 14 12 11 16 16 C 1.53003 * 109.46833 * 299.99951 * 14 12 11 17 17 N 1.46499 * 109.47127 * 180.02562 * 14 12 11 18 18 C 1.36941 * 119.99805 * 204.99910 * 17 14 12 19 19 H 1.08004 * 119.99718 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99865 * 179.97438 * 18 17 14 21 21 N 1.31619 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99722 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47640 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46908 * 120.00485 * 22 20 18 25 25 H 1.48499 * 109.47403 * 240.00245 * 22 20 18 26 26 C 1.46923 * 120.63139 * 186.08131 * 8 6 5 27 27 C 1.35911 * 107.17115 * 0.02562 * 5 4 3 28 28 O 1.34208 * 125.44345 * 359.69496 * 3 2 1 29 29 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47355 * 59.99683 * 1 2 3 31 31 H 1.09006 * 109.47366 * 300.00520 * 1 2 3 32 32 H 1.09001 * 109.58306 * 353.36985 * 9 8 6 33 33 H 1.08999 * 109.58598 * 113.79079 * 9 8 6 34 34 H 1.08997 * 109.50388 * 65.31779 * 10 9 8 35 35 H 1.09002 * 109.49923 * 185.41678 * 10 9 8 36 36 H 1.09007 * 109.46160 * 181.38577 * 11 10 9 37 37 H 1.08995 * 109.46447 * 301.35942 * 11 10 9 38 38 H 1.08999 * 109.47440 * 299.99820 * 16 14 12 39 39 H 1.08997 * 109.47068 * 60.00068 * 16 14 12 40 40 H 1.09000 * 109.46543 * 179.97438 * 16 14 12 41 41 H 0.96997 * 120.00328 * 25.00325 * 17 14 12 42 42 H 0.96996 * 119.99859 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58957 * 246.20766 * 26 8 6 44 44 H 1.09005 * 109.58669 * 6.63076 * 26 8 6 45 45 H 1.07999 * 126.45609 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5702 2.7406 -0.0003 6 6 4.8893 3.3975 -0.0006 7 8 4.9671 4.6053 0.1189 8 7 6.0094 2.6599 -0.1332 9 6 5.9287 1.2205 -0.4171 10 6 6.7485 0.4641 0.6328 11 6 8.1739 1.0206 0.6592 12 6 8.1387 2.5003 1.0481 13 1 7.6676 2.6085 2.0251 14 6 9.5663 3.0474 1.1062 15 1 10.0366 2.9400 0.1287 16 6 10.3700 2.2657 2.1474 17 7 9.5318 4.4637 1.4791 18 6 10.5596 5.2926 1.1159 19 1 11.3954 4.9022 0.5541 20 6 10.5266 6.6346 1.4687 21 7 9.5078 7.1104 2.1529 22 14 11.9289 7.7651 0.9739 23 1 12.9454 6.9910 0.2171 24 1 11.4039 8.8602 0.1190 25 1 12.5521 8.3432 2.1915 26 6 7.3345 3.2809 -0.0027 27 6 2.3604 3.3599 -0.0007 28 8 1.4227 2.3958 -0.0058 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 4.8888 0.8969 -0.3715 33 1 6.3325 1.0207 -1.4096 34 1 6.2901 0.5915 1.6135 35 1 6.7764 -0.5955 0.3786 36 1 8.7663 0.4676 1.3883 37 1 8.6231 0.9155 -0.3283 38 1 9.8997 2.3731 3.1249 39 1 10.3956 1.2119 1.8704 40 1 11.3872 2.6552 2.1884 41 1 8.7811 4.8143 1.9833 42 1 9.4850 8.0482 2.3998 43 1 7.8507 3.2457 -0.9621 44 1 7.2226 4.3172 0.3165 45 1 2.1850 4.4256 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753797025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:08 Heat of formation + Delta-G solvation = -17.474788 kcal Electronic energy + Delta-G solvation = -28036.128582 eV Core-core repulsion = 24057.143225 eV Total energy + Delta-G solvation = -3978.985357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.74656 -39.91664 -39.16694 -37.64724 -35.58410 -34.98578 -32.78835 -31.61135 -30.46674 -29.66300 -28.15388 -27.87289 -25.64549 -24.44682 -23.25408 -23.10735 -22.35071 -21.04475 -20.00320 -19.38413 -18.30879 -17.83698 -17.32969 -16.90234 -16.72160 -15.69903 -15.59173 -15.55354 -14.89621 -14.76411 -14.26482 -14.12957 -13.72829 -13.55143 -13.42325 -12.95915 -12.85623 -12.75364 -12.57710 -12.36597 -12.23747 -11.97019 -11.42667 -11.31313 -11.15482 -10.90654 -10.79623 -10.63642 -10.58738 -10.15704 -10.13361 -10.06695 -9.83615 -9.52855 -9.39860 -8.98455 -8.82262 -8.29216 -6.84558 -5.65174 -2.93969 0.92957 1.57223 1.79967 2.42767 3.13701 3.33876 3.50136 3.55263 3.57789 4.19197 4.42152 4.50706 4.65192 4.67074 4.78003 4.93545 5.07467 5.19801 5.21485 5.27683 5.37249 5.44288 5.60579 5.68181 5.85433 5.92949 5.97862 6.03665 6.11530 6.16103 6.29540 6.31764 6.37250 6.50930 6.55198 6.58704 6.68841 6.81624 6.92828 7.01181 7.19142 7.21167 7.65703 7.80326 8.29996 8.52652 9.63741 10.22235 10.56810 11.57259 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019752 B = 0.003016 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.252676 B = 9282.013513 C =10392.883527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.245 6.245 3 C 0.378 3.622 4 N -0.450 5.450 5 C -0.037 4.037 6 C 0.593 3.407 7 O -0.525 6.525 8 N -0.589 5.589 9 C 0.065 3.935 10 C -0.126 4.126 11 C -0.116 4.116 12 C -0.101 4.101 13 H 0.069 0.931 14 C 0.180 3.820 15 H 0.047 0.953 16 C -0.164 4.164 17 N -0.724 5.724 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.929 5.929 22 Si 0.903 3.097 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.122 3.878 27 C 0.002 3.998 28 O -0.225 6.225 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.518 -17.644 -5.494 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.153 6.153 3 C 0.133 3.867 4 N -0.197 5.197 5 C -0.155 4.155 6 C 0.379 3.621 7 O -0.401 6.401 8 N -0.320 5.320 9 C -0.057 4.057 10 C -0.165 4.165 11 C -0.154 4.154 12 C -0.122 4.122 13 H 0.088 0.912 14 C 0.069 3.931 15 H 0.065 0.935 16 C -0.224 4.224 17 N -0.366 5.366 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.735 3.265 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.001 3.999 27 C -0.070 4.070 28 O -0.117 6.117 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.898 -17.633 -5.513 26.428 hybrid contribution -0.113 1.237 0.010 1.242 sum -19.011 -16.396 -5.503 25.700 Atomic orbital electron populations 1.23308 0.75129 1.05648 1.03066 1.86384 1.23674 1.16019 1.89205 1.23771 0.85916 0.79533 0.97478 1.70840 1.08474 1.15588 1.24787 1.21851 0.96132 0.87968 1.09538 1.16765 0.81800 0.85879 0.77653 1.90906 1.85976 1.12744 1.50512 1.47982 1.05895 1.09715 1.68450 1.22855 1.06303 0.79108 0.97482 1.21822 0.95928 0.99026 0.99685 1.21665 0.96231 0.95867 1.01685 1.21829 0.97435 0.94103 0.98792 0.91228 1.20183 0.91110 0.85716 0.96047 0.93515 1.22473 1.01367 0.98159 1.00413 1.42466 1.24958 1.02785 1.66373 1.19246 0.98990 0.89994 1.28443 0.91255 1.24729 0.97984 0.97090 1.01179 1.69679 1.30616 1.13867 1.43628 0.86173 0.81677 0.81121 0.77553 1.20665 1.21969 1.22047 1.21863 0.79892 0.99205 0.98926 1.24992 0.84754 0.93795 1.03435 1.84386 1.39528 1.15817 1.71938 0.86303 0.91391 0.91349 0.83827 0.92429 0.91864 0.91309 0.91441 0.92051 0.93639 0.94259 0.92943 0.78210 0.93646 0.91566 0.87529 0.74619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.73 101.05 1.08 1.17 16 2 O -0.25 -2.05 10.55 -40.98 -0.43 -2.48 16 3 C 0.38 4.00 8.98 52.22 0.47 4.47 16 4 N -0.45 -5.76 7.78 -11.72 -0.09 -5.85 16 5 C -0.04 -0.50 6.72 -82.99 -0.56 -1.06 16 6 C 0.59 10.17 7.68 -12.55 -0.10 10.07 16 7 O -0.52 -10.79 16.34 5.26 0.09 -10.70 16 8 N -0.59 -9.65 2.97 -173.79 -0.52 -10.17 16 9 C 0.07 0.87 6.32 -3.71 -0.02 0.85 16 10 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 11 C -0.12 -1.61 4.85 -26.69 -0.13 -1.74 16 12 C -0.10 -1.76 1.99 -90.27 -0.18 -1.94 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.18 3.62 2.47 -67.93 -0.17 3.45 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.16 -3.03 9.14 37.16 0.34 -2.69 16 17 N -0.72 -18.44 4.52 -53.42 -0.24 -18.68 16 18 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 22 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 C 0.12 2.26 5.48 -3.49 -0.02 2.24 16 27 C 0.00 0.02 11.94 29.90 0.36 0.38 16 28 O -0.23 -2.17 10.20 -17.78 -0.18 -2.35 16 29 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.15 1.91 3.67 -76.68 -0.28 1.63 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.88 6.36 -51.92 -0.33 0.55 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.38 10.61 7.64 -40.82 -0.31 10.30 16 42 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.11 2.40 6.58 -51.93 -0.34 2.06 16 45 H 0.24 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -34.38 366.58 -6.12 -40.50 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.64 Total: 8.30 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 0.67 Total: 6.18 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -0.12 Total: -62.94 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.53 Total: -15.54 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.38 -6.12 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.025 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds