Wall clock time and date at job start Tue Mar 31 2020 14:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35353 * 117.00425 * 2 1 4 4 N 1.30549 * 125.45184 * 179.97438 * 3 2 1 5 5 C 1.36328 * 108.38806 * 179.97438 * 4 3 2 6 6 C 1.47366 * 126.41442 * 180.02562 * 5 4 3 7 7 O 1.21618 * 119.99840 * 186.55164 * 6 5 4 8 8 N 1.34773 * 120.00057 * 6.54292 * 6 5 4 9 9 C 1.46932 * 120.63048 * 6.36719 * 8 6 5 10 10 C 1.53187 * 108.77323 * 233.58205 * 9 8 6 11 11 C 1.53039 * 109.31345 * 305.36211 * 10 9 8 12 12 C 1.53041 * 109.54015 * 61.36770 * 11 10 9 13 13 H 1.08999 * 109.49371 * 58.61692 * 12 11 10 14 14 C 1.52999 * 109.50231 * 178.68321 * 12 11 10 15 15 H 1.08999 * 109.46960 * 60.00065 * 14 12 11 16 16 C 1.53003 * 109.46833 * 299.99951 * 14 12 11 17 17 N 1.46499 * 109.47127 * 180.02562 * 14 12 11 18 18 C 1.36941 * 119.99805 * 204.99910 * 17 14 12 19 19 H 1.08004 * 119.99718 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99865 * 179.97438 * 18 17 14 21 21 N 1.31619 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99722 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47640 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46908 * 120.00485 * 22 20 18 25 25 H 1.48499 * 109.47403 * 240.00245 * 22 20 18 26 26 C 1.46923 * 120.63139 * 186.08131 * 8 6 5 27 27 C 1.35911 * 107.17115 * 0.02562 * 5 4 3 28 28 O 1.34208 * 125.44345 * 359.69496 * 3 2 1 29 29 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47355 * 59.99683 * 1 2 3 31 31 H 1.09006 * 109.47366 * 300.00520 * 1 2 3 32 32 H 1.09001 * 109.58306 * 353.36985 * 9 8 6 33 33 H 1.08999 * 109.58598 * 113.79079 * 9 8 6 34 34 H 1.08997 * 109.50388 * 65.31779 * 10 9 8 35 35 H 1.09002 * 109.49923 * 185.41678 * 10 9 8 36 36 H 1.09007 * 109.46160 * 181.38577 * 11 10 9 37 37 H 1.08995 * 109.46447 * 301.35942 * 11 10 9 38 38 H 1.08999 * 109.47440 * 299.99820 * 16 14 12 39 39 H 1.08997 * 109.47068 * 60.00068 * 16 14 12 40 40 H 1.09000 * 109.46543 * 179.97438 * 16 14 12 41 41 H 0.96997 * 120.00328 * 25.00325 * 17 14 12 42 42 H 0.96996 * 119.99859 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58957 * 246.20766 * 26 8 6 44 44 H 1.09005 * 109.58669 * 6.63076 * 26 8 6 45 45 H 1.07999 * 126.45609 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5702 2.7406 -0.0003 6 6 4.8893 3.3975 -0.0006 7 8 4.9671 4.6053 0.1189 8 7 6.0094 2.6599 -0.1332 9 6 5.9287 1.2205 -0.4171 10 6 6.7485 0.4641 0.6328 11 6 8.1739 1.0206 0.6592 12 6 8.1387 2.5003 1.0481 13 1 7.6676 2.6085 2.0251 14 6 9.5663 3.0474 1.1062 15 1 10.0366 2.9400 0.1287 16 6 10.3700 2.2657 2.1474 17 7 9.5318 4.4637 1.4791 18 6 10.5596 5.2926 1.1159 19 1 11.3954 4.9022 0.5541 20 6 10.5266 6.6346 1.4687 21 7 9.5078 7.1104 2.1529 22 14 11.9289 7.7651 0.9739 23 1 12.9454 6.9910 0.2171 24 1 11.4039 8.8602 0.1190 25 1 12.5521 8.3432 2.1915 26 6 7.3345 3.2809 -0.0027 27 6 2.3604 3.3599 -0.0007 28 8 1.4227 2.3958 -0.0058 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 4.8888 0.8969 -0.3715 33 1 6.3325 1.0207 -1.4096 34 1 6.2901 0.5915 1.6135 35 1 6.7764 -0.5955 0.3786 36 1 8.7663 0.4676 1.3883 37 1 8.6231 0.9155 -0.3283 38 1 9.8997 2.3731 3.1249 39 1 10.3956 1.2119 1.8704 40 1 11.3872 2.6552 2.1884 41 1 8.7811 4.8143 1.9833 42 1 9.4850 8.0482 2.3998 43 1 7.8507 3.2457 -0.9621 44 1 7.2226 4.3172 0.3165 45 1 2.1850 4.4256 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753797025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:07 Heat of formation + Delta-G solvation = -43.332426 kcal Electronic energy + Delta-G solvation = -28037.249853 eV Core-core repulsion = 24057.143225 eV Total energy + Delta-G solvation = -3980.106629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.61116 -41.20436 -39.80749 -39.06753 -37.02525 -36.12629 -34.54203 -33.11043 -31.56091 -31.10142 -29.82799 -28.30477 -26.87891 -26.13896 -24.78035 -24.18346 -23.35436 -22.28846 -21.23502 -20.75840 -19.31213 -19.11233 -18.61344 -18.31989 -17.48673 -16.97679 -16.70846 -16.46393 -16.26548 -15.95884 -15.60820 -15.52467 -15.34180 -15.01000 -14.54134 -14.30406 -14.22382 -14.05234 -13.80263 -13.44371 -13.08597 -13.00762 -12.97417 -12.80934 -12.61031 -12.40913 -12.24347 -12.11212 -12.07570 -11.91257 -11.69535 -11.47705 -11.44377 -11.19547 -10.95391 -10.57066 -9.90026 -9.57114 -8.96379 -7.89367 -5.17723 -0.00741 0.83182 0.86159 1.46418 1.47961 1.57569 1.62877 1.98303 2.12980 2.58291 3.20329 3.43982 3.71695 3.73471 3.89703 3.97212 4.03916 4.19576 4.20376 4.22760 4.27525 4.31529 4.39019 4.48824 4.56092 4.62506 4.68380 4.79337 4.82222 4.88899 4.93831 5.04915 5.09799 5.17161 5.18228 5.30721 5.39556 5.51387 5.54276 5.57649 5.64483 5.83874 6.25565 6.31934 6.47731 7.00450 7.37066 8.14567 8.36916 9.34520 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019752 B = 0.003016 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.252676 B = 9282.013513 C =10392.883527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.251 6.251 3 C 0.388 3.612 4 N -0.471 5.471 5 C -0.068 4.068 6 C 0.587 3.413 7 O -0.575 6.575 8 N -0.590 5.590 9 C 0.061 3.939 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.088 4.088 13 H 0.050 0.950 14 C 0.174 3.826 15 H 0.048 0.952 16 C -0.153 4.153 17 N -0.737 5.737 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.298 1.298 25 H -0.295 1.295 26 C 0.130 3.870 27 C 0.030 3.970 28 O -0.212 6.212 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.035 0.965 41 H 0.368 0.632 42 H 0.248 0.752 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.269 -20.602 -6.429 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.159 6.159 3 C 0.142 3.858 4 N -0.218 5.218 5 C -0.185 4.185 6 C 0.375 3.625 7 O -0.455 6.455 8 N -0.320 5.320 9 C -0.060 4.060 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.109 4.109 13 H 0.069 0.931 14 C 0.065 3.935 15 H 0.066 0.934 16 C -0.213 4.213 17 N -0.377 5.377 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.225 1.225 25 H -0.223 1.223 26 C 0.007 3.993 27 C -0.043 4.043 28 O -0.103 6.103 29 H 0.166 0.834 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.199 0.801 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -19.637 -20.700 -6.475 29.258 hybrid contribution -0.031 2.017 0.266 2.035 sum -19.668 -18.682 -6.208 27.828 Atomic orbital electron populations 1.23726 0.72603 1.07866 1.03906 1.86430 1.26130 1.14572 1.88737 1.23815 0.85670 0.80282 0.95990 1.70621 1.09923 1.14933 1.26280 1.21348 0.95157 0.88936 1.13069 1.17229 0.83161 0.85492 0.76611 1.90867 1.86920 1.14845 1.52875 1.48077 1.04892 1.11013 1.68018 1.23111 1.07328 0.77065 0.98487 1.21799 0.94464 1.00637 0.98824 1.21643 0.97673 0.92634 1.02727 1.21672 0.95044 0.96667 0.97471 0.93124 1.20457 0.93275 0.83320 0.96425 0.93367 1.22317 0.99618 1.00146 0.99223 1.42689 1.23814 1.04983 1.66179 1.19647 0.99241 0.90439 1.26830 0.90451 1.25558 1.00618 0.98878 1.02266 1.69859 1.32916 1.13703 1.45826 0.85113 0.79048 0.78909 0.76973 1.18742 1.22509 1.22274 1.21542 0.81549 0.97109 0.99060 1.25423 0.83922 0.94719 1.00201 1.84433 1.38781 1.15500 1.71587 0.83448 0.90423 0.90644 0.83155 0.91163 0.92915 0.87924 0.89846 0.90733 0.94494 0.90188 0.94533 0.80061 0.94356 0.91493 0.92475 0.72348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.73 113.37 1.22 1.27 16 2 O -0.25 -3.58 10.55 -64.21 -0.68 -4.26 16 3 C 0.39 7.48 8.98 130.43 1.17 8.65 16 4 N -0.47 -11.51 7.78 -419.39 -3.26 -14.77 16 5 C -0.07 -1.86 6.72 40.31 0.27 -1.59 16 6 C 0.59 20.98 7.68 86.65 0.67 21.65 16 7 O -0.57 -25.26 16.34 -4.09 -0.07 -25.33 16 8 N -0.59 -19.77 2.97 -822.00 -2.44 -22.21 16 9 C 0.06 1.56 6.32 86.36 0.55 2.10 16 10 C -0.12 -2.68 6.08 30.67 0.19 -2.49 16 11 C -0.11 -2.73 4.85 30.62 0.15 -2.58 16 12 C -0.09 -3.08 1.99 -10.57 -0.02 -3.10 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C 0.17 6.98 2.47 44.99 0.11 7.09 16 15 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 16 C -0.15 -5.46 9.14 71.98 0.66 -4.80 16 17 N -0.74 -38.80 4.52 -322.94 -1.46 -40.26 16 18 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 21 N -0.97 -63.05 13.06 21.65 0.28 -62.77 16 22 Si 0.97 48.29 29.55 68.60 2.03 50.32 16 23 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 25 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 26 C 0.13 5.00 5.48 86.51 0.47 5.47 16 27 C 0.03 0.61 11.94 67.28 0.80 1.41 16 28 O -0.21 -3.66 10.20 18.81 0.19 -3.46 16 29 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.15 3.79 3.67 -51.26 -0.19 3.60 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.86 6.36 -2.38 -0.02 1.85 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 2.19 6.40 -2.39 -0.02 2.17 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.37 21.53 7.64 -92.71 -0.71 20.82 16 42 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.06 2.78 6.58 -2.38 -0.02 2.77 16 45 H 0.26 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -78.64 366.58 2.26 -76.38 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.13 Total: 30.02 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.53 Total: 16.34 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -6.88 Total: -140.00 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.55 Total: -33.05 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -78.64 2.26 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.049 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds