Wall clock time and date at job start Tue Mar 31 2020 13:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47006 * 2 1 4 4 O 1.42898 * 109.47395 * 119.99909 * 2 1 3 5 5 C 1.35923 * 117.00171 * 85.22230 * 4 2 1 6 6 C 1.38846 * 120.40747 * 174.63938 * 5 4 2 7 7 N 1.31875 * 121.00113 * 180.02562 * 6 5 4 8 8 C 1.31686 * 121.94243 * 359.97438 * 7 6 5 9 9 C 1.39530 * 120.69122 * 359.97438 * 8 7 6 10 10 C 1.47847 * 120.53404 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00117 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99914 * 359.97305 * 10 9 8 13 13 C 1.46500 * 119.99929 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47253 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47369 * 59.99864 * 14 13 12 16 16 O 1.42906 * 109.46887 * 300.00254 * 14 13 12 17 17 C 1.52996 * 109.47576 * 180.02562 * 14 13 12 18 18 N 1.46497 * 109.47518 * 185.00035 * 17 14 13 19 19 C 1.36938 * 120.00250 * 179.97438 * 18 17 14 20 20 H 1.07998 * 119.99874 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00091 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00046 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00136 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47231 * 89.99393 * 23 21 19 25 25 H 1.48493 * 109.47197 * 209.99625 * 23 21 19 26 26 H 1.48502 * 109.46908 * 329.99511 * 23 21 19 27 27 C 1.38841 * 120.40098 * 354.63220 * 5 4 2 28 28 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47391 * 299.99995 * 1 2 3 30 30 H 1.08998 * 109.47345 * 60.00295 * 1 2 3 31 31 H 1.08997 * 109.47374 * 240.00454 * 2 1 3 32 32 H 1.08991 * 109.47192 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46827 * 300.00021 * 3 2 1 34 34 H 1.09003 * 109.47042 * 59.99791 * 3 2 1 35 35 H 1.08002 * 119.49937 * 359.97438 * 6 5 4 36 36 H 1.07993 * 119.66005 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00026 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47476 * 300.00317 * 13 12 10 39 39 H 1.09002 * 109.47344 * 60.00581 * 13 12 10 40 40 H 0.96693 * 114.00069 * 299.99585 * 16 14 13 41 41 H 1.09003 * 109.46933 * 305.00237 * 17 14 13 42 42 H 1.08997 * 109.47448 * 64.99473 * 17 14 13 43 43 H 0.97004 * 119.99590 * 359.97438 * 18 17 14 44 44 H 0.96998 * 120.00033 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.88067 * 0.27921 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1170 -2.0265 1.0963 6 6 2.6759 -2.7415 2.1471 7 7 2.7895 -4.0542 2.0910 8 6 2.3820 -4.7447 1.0463 9 6 1.8079 -4.1030 -0.0516 10 6 1.3510 -4.8818 -1.2224 11 8 0.8518 -4.3129 -2.1735 12 7 1.4881 -6.2225 -1.2351 13 6 1.0350 -6.9942 -2.3950 14 6 1.3036 -8.4811 -2.1549 15 1 0.7636 -8.8092 -1.2667 16 8 2.7048 -8.6871 -1.9635 17 6 0.8310 -9.2871 -3.3664 18 7 0.9779 -10.7180 -3.0887 19 6 0.6154 -11.6398 -4.0342 20 1 0.2216 -11.3119 -4.9849 21 6 0.7551 -12.9956 -3.7712 22 7 0.4071 -13.8815 -4.6802 23 14 1.4369 -13.5627 -2.1271 24 1 0.3208 -13.7442 -1.1644 25 1 2.1512 -14.8522 -2.3057 26 1 2.3806 -12.5423 -1.6041 27 6 1.6723 -2.7103 -0.0272 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.0238 -2.2146 3.0233 36 1 2.4925 -5.8189 1.0396 37 1 1.8862 -6.6765 -0.4760 38 1 -0.0338 -6.8374 -2.5407 39 1 1.5748 -6.6660 -3.2832 40 1 3.2484 -8.4169 -2.7161 41 1 -0.2165 -9.0615 -3.5666 42 1 1.4322 -9.0222 -4.2361 43 1 1.3319 -11.0124 -2.2349 44 1 0.5044 -14.8289 -4.4963 45 1 1.2371 -2.1810 -0.8621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753922999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:11 Heat of formation + Delta-G solvation = -76.698803 kcal Electronic energy + Delta-G solvation = -26417.123044 eV Core-core repulsion = 22435.569540 eV Total energy + Delta-G solvation = -3981.553503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38855 -39.91761 -38.77232 -37.80173 -34.70499 -34.22382 -33.86794 -32.81723 -31.55639 -30.83698 -29.39001 -27.86212 -26.21561 -24.50987 -24.33660 -22.29487 -21.73073 -21.54678 -20.85008 -19.15420 -17.78687 -17.44882 -17.36892 -17.17306 -16.25419 -16.22026 -16.00263 -15.39594 -15.08732 -14.88606 -14.57337 -14.52126 -13.94984 -13.92099 -13.76859 -13.46668 -13.27712 -13.08136 -12.89695 -12.78707 -12.71588 -12.43543 -12.38102 -12.06627 -11.57861 -11.34648 -11.33973 -10.90118 -10.87782 -10.74136 -10.23013 -10.19600 -9.98509 -9.78220 -9.59114 -9.35204 -8.95833 -8.93598 -7.28999 -5.80056 -3.16695 0.18196 0.73782 2.49913 2.53107 2.77582 3.37987 3.40543 3.43558 3.45562 3.89367 4.10220 4.20868 4.29136 4.36446 4.39329 4.49772 4.51494 4.53865 4.57882 4.62179 4.94165 5.00824 5.04519 5.15032 5.18718 5.20844 5.38758 5.42048 5.46760 5.48399 5.57384 5.62131 5.64034 5.70970 5.79942 5.82996 6.12155 6.37182 6.49527 6.70265 7.17848 7.39659 7.70980 7.86994 7.95064 8.38219 9.17442 9.89368 10.08618 11.37849 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.002049 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.089288 B =13664.418563 C =14391.011425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.301 6.301 5 C 0.077 3.923 6 C 0.096 3.904 7 N -0.446 5.446 8 C 0.095 3.905 9 C -0.143 4.143 10 C 0.560 3.440 11 O -0.535 6.535 12 N -0.712 5.712 13 C 0.089 3.911 14 C 0.084 3.916 15 H 0.106 0.894 16 O -0.556 6.556 17 C 0.132 3.868 18 N -0.749 5.749 19 C -0.250 4.250 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.273 1.273 27 C -0.112 4.112 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.406 0.594 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.377 0.623 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.366 0.634 44 H 0.260 0.740 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 30.955 12.900 33.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.214 6.214 5 C 0.029 3.971 6 C -0.063 4.063 7 N -0.155 5.155 8 C -0.063 4.063 9 C -0.148 4.148 10 C 0.346 3.654 11 O -0.413 6.413 12 N -0.364 5.364 13 C -0.035 4.035 14 C 0.024 3.976 15 H 0.124 0.876 16 O -0.361 6.361 17 C 0.003 3.997 18 N -0.395 5.395 19 C -0.379 4.379 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.198 1.198 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.242 0.758 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.224 0.776 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.199 0.801 44 H 0.070 0.930 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.748 30.711 13.406 33.718 hybrid contribution 0.252 -0.216 -0.096 0.346 sum 4.001 30.495 13.310 33.513 Atomic orbital electron populations 1.22396 0.94565 1.03393 1.03564 1.22580 0.94751 0.93981 0.87043 1.21857 1.02222 0.93042 1.03369 1.86162 1.81011 1.15080 1.39162 1.20057 0.97369 0.84296 0.95398 1.22462 0.97029 0.89288 0.97535 1.67763 1.15373 1.06916 1.25403 1.22930 0.94606 1.00548 0.88238 1.20864 1.03058 0.94253 0.96647 1.18001 0.78928 0.82208 0.86280 1.90790 1.44208 1.70248 1.36039 1.45815 1.62730 1.06190 1.21670 1.22153 1.01406 0.91585 0.88326 1.22475 0.82935 0.91245 1.00939 0.87612 1.86555 1.16689 1.87879 1.45018 1.21167 0.98998 0.85453 0.94052 1.42565 1.78729 1.00359 1.17883 1.19035 1.35773 0.86459 0.96654 0.89255 1.24676 1.01039 0.95625 0.97644 1.69703 1.53558 1.00847 1.33882 0.86538 0.79135 0.78145 0.84763 1.21081 1.21717 1.19840 1.21883 0.99708 0.93803 0.98469 0.91790 0.91162 0.90522 0.90593 0.91488 0.90194 0.91252 0.81394 0.81914 0.75801 0.89888 0.90515 0.77590 0.94411 0.95005 0.80084 0.92989 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.20 37.16 0.34 -0.69 16 2 C 0.07 0.44 2.85 -26.73 -0.08 0.37 16 3 C -0.15 -0.64 9.56 37.16 0.36 -0.28 16 4 O -0.30 -2.40 9.81 -19.50 -0.19 -2.60 16 5 C 0.08 0.67 6.62 -39.13 -0.26 0.41 16 6 C 0.10 0.83 11.13 -17.31 -0.19 0.63 16 7 N -0.45 -4.41 10.34 -12.80 -0.13 -4.54 16 8 C 0.09 0.88 10.71 -17.13 -0.18 0.70 16 9 C -0.14 -1.45 5.89 -104.84 -0.62 -2.07 16 10 C 0.56 6.62 7.78 -12.33 -0.10 6.53 16 11 O -0.54 -7.99 16.42 5.32 0.09 -7.90 16 12 N -0.71 -7.38 5.40 -61.25 -0.33 -7.71 16 13 C 0.09 1.02 5.34 -4.04 -0.02 1.00 16 14 C 0.08 1.12 3.09 -26.73 -0.08 1.04 16 15 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 16 O -0.56 -7.54 13.03 -35.23 -0.46 -8.00 16 17 C 0.13 2.32 5.90 -4.05 -0.02 2.30 16 18 N -0.75 -17.35 5.35 -59.91 -0.32 -17.67 16 19 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 23 Si 0.88 22.11 27.74 -169.99 -4.71 17.40 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.27 -6.49 6.52 56.52 0.37 -6.12 16 27 C -0.11 -1.07 7.89 -38.72 -0.31 -1.37 16 28 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.47 6.32 -51.93 -0.33 0.14 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 1.17 6.41 -52.49 -0.34 0.83 16 37 H 0.41 3.52 6.41 -40.82 -0.26 3.26 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.38 4.15 9.04 45.56 0.41 4.56 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.37 8.43 5.53 -40.82 -0.23 8.21 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.15 1.42 5.28 -52.49 -0.28 1.14 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.07 376.51 -6.65 -41.72 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.62 Total: 10.61 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.41 Total: 1.48 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.01 Total: -58.38 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.56 Total: -18.50 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.07 -6.65 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753922999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.980 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds