Wall clock time and date at job start Tue Mar 31 2020 13:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47006 * 2 1 4 4 O 1.42898 * 109.47395 * 119.99909 * 2 1 3 5 5 C 1.35923 * 117.00171 * 85.22230 * 4 2 1 6 6 C 1.38846 * 120.40747 * 174.63938 * 5 4 2 7 7 N 1.31875 * 121.00113 * 180.02562 * 6 5 4 8 8 C 1.31686 * 121.94243 * 359.97438 * 7 6 5 9 9 C 1.39530 * 120.69122 * 359.97438 * 8 7 6 10 10 C 1.47847 * 120.53404 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00117 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99914 * 359.97305 * 10 9 8 13 13 C 1.46500 * 119.99929 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47253 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47369 * 59.99864 * 14 13 12 16 16 O 1.42906 * 109.46887 * 300.00254 * 14 13 12 17 17 C 1.52996 * 109.47576 * 180.02562 * 14 13 12 18 18 N 1.46497 * 109.47518 * 185.00035 * 17 14 13 19 19 C 1.36938 * 120.00250 * 179.97438 * 18 17 14 20 20 H 1.07998 * 119.99874 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00091 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00046 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00136 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47231 * 89.99393 * 23 21 19 25 25 H 1.48493 * 109.47197 * 209.99625 * 23 21 19 26 26 H 1.48502 * 109.46908 * 329.99511 * 23 21 19 27 27 C 1.38841 * 120.40098 * 354.63220 * 5 4 2 28 28 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47391 * 299.99995 * 1 2 3 30 30 H 1.08998 * 109.47345 * 60.00295 * 1 2 3 31 31 H 1.08997 * 109.47374 * 240.00454 * 2 1 3 32 32 H 1.08991 * 109.47192 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46827 * 300.00021 * 3 2 1 34 34 H 1.09003 * 109.47042 * 59.99791 * 3 2 1 35 35 H 1.08002 * 119.49937 * 359.97438 * 6 5 4 36 36 H 1.07993 * 119.66005 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00026 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47476 * 300.00317 * 13 12 10 39 39 H 1.09002 * 109.47344 * 60.00581 * 13 12 10 40 40 H 0.96693 * 114.00069 * 299.99585 * 16 14 13 41 41 H 1.09003 * 109.46933 * 305.00237 * 17 14 13 42 42 H 1.08997 * 109.47448 * 64.99473 * 17 14 13 43 43 H 0.97004 * 119.99590 * 359.97438 * 18 17 14 44 44 H 0.96998 * 120.00033 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.88067 * 0.27921 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1170 -2.0265 1.0963 6 6 2.6759 -2.7415 2.1471 7 7 2.7895 -4.0542 2.0910 8 6 2.3820 -4.7447 1.0463 9 6 1.8079 -4.1030 -0.0516 10 6 1.3510 -4.8818 -1.2224 11 8 0.8518 -4.3129 -2.1735 12 7 1.4881 -6.2225 -1.2351 13 6 1.0350 -6.9942 -2.3950 14 6 1.3036 -8.4811 -2.1549 15 1 0.7636 -8.8092 -1.2667 16 8 2.7048 -8.6871 -1.9635 17 6 0.8310 -9.2871 -3.3664 18 7 0.9779 -10.7180 -3.0887 19 6 0.6154 -11.6398 -4.0342 20 1 0.2216 -11.3119 -4.9849 21 6 0.7551 -12.9956 -3.7712 22 7 0.4071 -13.8815 -4.6802 23 14 1.4369 -13.5627 -2.1271 24 1 0.3208 -13.7442 -1.1644 25 1 2.1512 -14.8522 -2.3057 26 1 2.3806 -12.5423 -1.6041 27 6 1.6723 -2.7103 -0.0272 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.0238 -2.2146 3.0233 36 1 2.4925 -5.8189 1.0396 37 1 1.8862 -6.6765 -0.4760 38 1 -0.0338 -6.8374 -2.5407 39 1 1.5748 -6.6660 -3.2832 40 1 3.2484 -8.4169 -2.7161 41 1 -0.2165 -9.0615 -3.5666 42 1 1.4322 -9.0222 -4.2361 43 1 1.3319 -11.0124 -2.2349 44 1 0.5044 -14.8289 -4.4963 45 1 1.2371 -2.1810 -0.8621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753922999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:10 Heat of formation + Delta-G solvation = -105.317841 kcal Electronic energy + Delta-G solvation = -26418.364058 eV Core-core repulsion = 22435.569540 eV Total energy + Delta-G solvation = -3982.794518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09365 -40.75773 -39.47982 -38.93384 -36.23617 -35.45978 -34.36553 -33.60522 -33.44259 -31.67347 -30.61272 -28.26011 -27.52924 -25.56620 -25.00962 -23.88501 -22.88034 -22.24395 -21.73535 -20.01034 -19.67022 -18.24047 -18.12869 -17.87473 -17.27234 -17.25787 -16.65440 -16.52205 -16.35599 -16.00354 -15.49434 -15.42602 -15.21121 -15.02242 -14.73334 -14.59417 -14.28712 -14.01135 -13.96321 -13.56329 -13.39982 -13.36970 -13.20893 -13.14639 -12.88691 -12.80338 -12.23767 -12.05709 -11.88613 -11.82917 -11.80863 -11.67076 -11.07342 -10.98701 -10.97887 -10.66202 -10.26111 -9.59250 -9.31440 -8.03412 -5.37213 -0.55614 0.04922 1.40835 1.43118 1.51391 1.66885 1.85747 1.98113 2.49066 2.67202 3.19233 3.26814 3.34817 3.46724 3.52229 3.65688 3.67807 3.75398 3.83267 3.92056 3.97751 4.07106 4.08178 4.20541 4.32837 4.59404 4.63130 4.68093 4.70408 4.75092 4.80196 4.82668 4.85784 4.93491 5.15401 5.16877 5.19367 5.23369 5.25165 5.73959 6.10472 6.19903 6.33498 6.70920 6.76147 6.99489 7.07790 7.83138 8.02029 9.17735 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.002049 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.089288 B =13664.418563 C =14391.011425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.066 3.934 3 C -0.145 4.145 4 O -0.306 6.306 5 C 0.077 3.923 6 C 0.097 3.903 7 N -0.462 5.462 8 C 0.098 3.902 9 C -0.154 4.154 10 C 0.563 3.437 11 O -0.572 6.572 12 N -0.701 5.701 13 C 0.099 3.901 14 C 0.105 3.895 15 H 0.112 0.888 16 O -0.563 6.563 17 C 0.124 3.876 18 N -0.752 5.752 19 C -0.238 4.238 20 H 0.057 0.943 21 C -0.064 4.064 22 N -0.983 5.983 23 Si 0.957 3.043 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.250 1.250 27 C -0.117 4.117 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.191 0.809 36 H 0.183 0.817 37 H 0.416 0.584 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.388 0.612 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.369 0.631 44 H 0.258 0.742 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 32.555 15.089 36.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.010 3.990 3 C -0.202 4.202 4 O -0.219 6.219 5 C 0.028 3.972 6 C -0.061 4.061 7 N -0.170 5.170 8 C -0.060 4.060 9 C -0.160 4.160 10 C 0.350 3.650 11 O -0.452 6.452 12 N -0.353 5.353 13 C -0.025 4.025 14 C 0.045 3.955 15 H 0.130 0.870 16 O -0.370 6.370 17 C -0.003 4.003 18 N -0.399 5.399 19 C -0.369 4.369 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.633 5.633 23 Si 0.784 3.216 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.174 1.174 27 C -0.143 4.143 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.208 0.792 36 H 0.200 0.800 37 H 0.254 0.746 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.238 0.762 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.203 0.797 44 H 0.067 0.933 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.759 32.361 15.623 36.248 hybrid contribution -0.081 -0.578 -0.850 1.031 sum 4.678 31.783 14.772 35.359 Atomic orbital electron populations 1.22384 0.94285 1.02617 1.04393 1.22787 0.95054 0.94791 0.86356 1.21876 1.02183 0.91809 1.04292 1.86163 1.81012 1.14612 1.40091 1.20085 0.97210 0.84729 0.95130 1.22857 0.96079 0.89133 0.98044 1.67829 1.16011 1.07515 1.25646 1.23193 0.93763 1.01420 0.87627 1.20755 1.04329 0.94356 0.96514 1.18201 0.78227 0.82397 0.86212 1.90772 1.46026 1.70946 1.37456 1.45665 1.62201 1.05774 1.21611 1.21940 1.01416 0.90368 0.88803 1.22166 0.82972 0.91472 0.98916 0.87014 1.86534 1.16587 1.88039 1.45801 1.21402 0.99341 0.83160 0.96430 1.42546 1.78485 1.01890 1.16933 1.19041 1.34030 0.87528 0.96282 0.92511 1.25533 1.02405 0.95840 1.01794 1.69886 1.55910 1.01066 1.36483 0.85375 0.78750 0.77570 0.79901 1.20370 1.22411 1.17446 1.21954 0.99739 0.93834 0.98815 0.93314 0.90868 0.89174 0.90889 0.91551 0.88616 0.90985 0.79227 0.80047 0.74568 0.90051 0.90350 0.76226 0.94267 0.94666 0.79728 0.93318 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.20 71.98 0.66 -1.22 16 2 C 0.07 0.74 2.85 30.60 0.09 0.83 16 3 C -0.14 -1.02 9.56 71.99 0.69 -0.33 16 4 O -0.31 -4.53 9.81 -92.68 -0.91 -5.43 16 5 C 0.08 1.26 6.62 22.56 0.15 1.41 16 6 C 0.10 1.51 11.13 84.83 0.94 2.46 16 7 N -0.46 -8.26 10.34 -194.40 -2.01 -10.27 16 8 C 0.10 1.63 10.71 85.03 0.91 2.54 16 9 C -0.15 -2.96 5.89 -20.01 -0.12 -3.08 16 10 C 0.56 12.67 7.78 86.79 0.68 13.34 16 11 O -0.57 -16.81 16.42 -3.88 -0.06 -16.87 16 12 N -0.70 -13.10 5.40 -465.97 -2.52 -15.62 16 13 C 0.10 2.08 5.34 86.38 0.46 2.54 16 14 C 0.10 2.53 3.09 30.59 0.09 2.63 16 15 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 16 O -0.56 -13.58 13.03 -148.98 -1.94 -15.52 16 17 C 0.12 4.19 5.90 86.38 0.51 4.70 16 18 N -0.75 -33.80 5.35 -343.47 -1.84 -35.64 16 19 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 21 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 22 N -0.98 -62.96 13.97 21.65 0.30 -62.65 16 23 Si 0.96 45.35 27.74 68.60 1.90 47.25 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.25 -10.78 6.52 99.48 0.65 -10.14 16 27 C -0.12 -2.15 7.89 22.83 0.18 -1.97 16 28 H 0.05 0.66 6.97 -2.39 -0.02 0.64 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.86 6.32 -2.39 -0.02 0.84 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.18 2.14 6.41 -2.91 -0.02 2.12 16 37 H 0.42 6.10 6.41 -92.71 -0.59 5.51 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.39 7.47 9.04 -74.06 -0.67 6.80 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.37 16.06 5.53 -92.71 -0.51 15.55 16 44 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.15 2.79 5.28 -2.91 -0.02 2.78 16 Total: -1.00 -75.52 376.51 -1.28 -76.80 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.79 Total: 29.98 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.59 Total: 7.98 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -6.06 Total: -124.19 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -2.91 Total: -37.83 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -75.52 -1.28 -76.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753922999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.519 kcal (2) G-P(sol) polarization free energy of solvation -75.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds