Wall clock time and date at job start Tue Mar 31 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 O 1.42896 * 109.47342 * 119.99929 * 2 1 3 5 5 C 1.35920 * 117.00165 * 85.27843 * 4 2 1 6 6 C 1.38845 * 120.40957 * 174.60883 * 5 4 2 7 7 N 1.31883 * 121.00185 * 180.02562 * 6 5 4 8 8 C 1.31681 * 121.94102 * 0.02562 * 7 6 5 9 9 C 1.39525 * 120.69078 * 359.97438 * 8 7 6 10 10 C 1.47851 * 120.53095 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00081 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99779 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99813 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46939 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47421 * 304.99951 * 14 13 12 16 16 O 1.42898 * 109.47142 * 65.00476 * 14 13 12 17 17 C 1.53007 * 109.47064 * 185.00317 * 14 13 12 18 18 N 1.46491 * 109.47178 * 180.02562 * 17 14 13 19 19 C 1.36939 * 120.00291 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99247 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00220 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00362 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47414 * 89.99895 * 23 21 19 25 25 H 1.48497 * 109.47260 * 210.00612 * 23 21 19 26 26 H 1.48503 * 109.46908 * 329.99848 * 23 21 19 27 27 C 1.38843 * 120.40335 * 354.63560 * 5 4 2 28 28 H 1.09005 * 109.47020 * 299.99827 * 1 2 3 29 29 H 1.08994 * 109.47201 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47270 * 240.00189 * 2 1 3 32 32 H 1.08999 * 109.47019 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47240 * 300.00102 * 3 2 1 34 34 H 1.09005 * 109.47087 * 60.00214 * 3 2 1 35 35 H 1.08002 * 119.49827 * 0.02771 * 6 5 4 36 36 H 1.07999 * 119.65309 * 180.02562 * 8 7 6 37 37 H 0.97004 * 120.00253 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.47085 * 299.99982 * 13 12 10 39 39 H 1.09007 * 109.47159 * 60.00406 * 13 12 10 40 40 H 0.96688 * 114.00313 * 59.99633 * 16 14 13 41 41 H 1.09005 * 109.46597 * 299.99748 * 17 14 13 42 42 H 1.08998 * 109.47349 * 59.99716 * 17 14 13 43 43 H 0.97001 * 120.00028 * 359.97438 * 18 17 14 44 44 H 0.97003 * 120.00203 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.87874 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1181 -2.0263 1.0959 6 6 2.6777 -2.7413 2.1464 7 7 2.7923 -4.0539 2.0899 8 6 2.3862 -4.7443 1.0447 9 6 1.8126 -4.1026 -0.0535 10 6 1.3583 -4.8812 -1.2254 11 8 0.8603 -4.3123 -2.1771 12 7 1.4965 -6.2218 -1.2385 13 6 1.0469 -6.9932 -2.4000 14 6 1.3173 -8.4800 -2.1604 15 1 2.3716 -8.6242 -1.9246 16 8 0.5177 -8.9397 -1.0689 17 6 0.9637 -9.2722 -3.4207 18 7 1.2220 -10.6958 -3.1912 19 6 0.9776 -11.6051 -4.1855 20 1 0.5948 -11.2726 -5.1391 21 6 1.2228 -12.9540 -3.9681 22 7 1.6898 -13.3591 -2.8062 23 14 0.8902 -14.1942 -5.3248 24 1 2.1109 -14.3606 -6.1537 25 1 0.5194 -15.4997 -4.7219 26 1 -0.2246 -13.7084 -6.1771 27 6 1.6745 -2.7102 -0.0281 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.0244 -2.2144 3.0232 36 1 2.4976 -5.8185 1.0377 37 1 1.8942 -6.6758 -0.4791 38 1 -0.0216 -6.8372 -2.5483 39 1 1.5888 -6.6641 -3.2867 40 1 -0.4338 -8.8418 -1.2097 41 1 -0.0908 -9.1281 -3.6565 42 1 1.5735 -8.9216 -4.2534 43 1 1.5661 -10.9944 -2.3348 44 1 1.8608 -14.3018 -2.6542 45 1 1.2350 -2.1815 -0.8609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753923000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:14 Heat of formation + Delta-G solvation = -80.465111 kcal Electronic energy + Delta-G solvation = -26332.252113 eV Core-core repulsion = 22350.535291 eV Total energy + Delta-G solvation = -3981.716823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34055 -39.85514 -38.71594 -37.64714 -34.60539 -34.05280 -33.83216 -32.76444 -31.38863 -30.72543 -29.04713 -27.83504 -25.98705 -24.45540 -24.29068 -22.59088 -21.68446 -21.45482 -20.77951 -19.08503 -17.43394 -17.34318 -17.20351 -17.07031 -16.22284 -16.12156 -15.93775 -15.34024 -14.97550 -14.83150 -14.51537 -14.47521 -13.92180 -13.89525 -13.69500 -13.39928 -13.06080 -13.01810 -12.84987 -12.74786 -12.67874 -12.40725 -12.32415 -11.91215 -11.54700 -11.31057 -10.98228 -10.84037 -10.74069 -10.63415 -10.19181 -10.18198 -9.92036 -9.81990 -9.54439 -9.28144 -8.92912 -8.89023 -6.96458 -5.78170 -3.08155 0.23314 0.78540 2.54061 2.58405 2.84980 3.42336 3.45748 3.47343 3.49226 3.94855 4.14306 4.24523 4.32754 4.40733 4.45733 4.52330 4.56141 4.57170 4.67772 4.79489 4.98960 5.03212 5.17548 5.18089 5.21878 5.23703 5.45835 5.51414 5.52679 5.55408 5.60730 5.65499 5.72231 5.87715 5.88971 6.13370 6.24457 6.46607 6.62742 6.74234 7.24817 7.44771 7.66324 7.88016 7.94443 8.39856 9.51654 10.07857 10.43672 11.44016 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.001911 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.360077 B =14650.973343 C =15286.635960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.301 6.301 5 C 0.076 3.924 6 C 0.095 3.905 7 N -0.446 5.446 8 C 0.096 3.904 9 C -0.143 4.143 10 C 0.560 3.440 11 O -0.537 6.537 12 N -0.711 5.711 13 C 0.089 3.911 14 C 0.088 3.912 15 H 0.106 0.894 16 O -0.551 6.551 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.112 4.112 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.374 0.626 41 H 0.023 0.977 42 H 0.029 0.971 43 H 0.389 0.611 44 H 0.256 0.744 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 29.356 9.029 30.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.214 6.214 5 C 0.028 3.972 6 C -0.063 4.063 7 N -0.154 5.154 8 C -0.063 4.063 9 C -0.148 4.148 10 C 0.346 3.654 11 O -0.415 6.415 12 N -0.363 5.363 13 C -0.035 4.035 14 C 0.028 3.972 15 H 0.123 0.877 16 O -0.356 6.356 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.182 0.818 37 H 0.242 0.758 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.221 0.779 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.224 0.776 44 H 0.066 0.934 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.826 29.221 9.285 30.672 hybrid contribution -0.891 -0.558 -1.379 1.734 sum -0.065 28.664 7.906 29.734 Atomic orbital electron populations 1.22395 0.94592 1.03389 1.03530 1.22574 0.94734 0.93969 0.87082 1.21856 1.02222 0.93065 1.03341 1.86159 1.81036 1.15118 1.39119 1.20055 0.97449 0.84269 0.95410 1.22463 0.97033 0.89306 0.97532 1.67769 1.15380 1.06887 1.25387 1.22948 0.94534 1.00587 0.88189 1.20872 1.03027 0.94243 0.96661 1.18004 0.78940 0.82244 0.86261 1.90781 1.44368 1.70280 1.36055 1.45848 1.62731 1.06134 1.21568 1.22198 1.00958 0.91962 0.88359 1.22405 0.96690 0.89199 0.88881 0.87657 1.86579 1.21324 1.86384 1.41348 1.21185 0.98133 0.87049 0.93814 1.42220 1.78940 0.99621 1.16254 1.19211 1.36792 0.87749 0.93870 0.91213 1.24762 1.01888 0.97063 0.97100 1.69675 1.50693 1.15010 1.22324 0.86179 0.77813 0.81082 0.81015 1.21679 1.21709 1.20766 1.21874 0.99752 0.93816 0.98447 0.91179 0.90549 0.91785 0.90593 0.91491 0.90222 0.91264 0.81413 0.81838 0.75798 0.90693 0.90083 0.77850 0.95918 0.95356 0.77613 0.93446 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 9.20 37.16 0.34 -0.73 16 2 C 0.07 0.46 2.85 -26.73 -0.08 0.39 16 3 C -0.15 -0.67 9.56 37.16 0.36 -0.31 16 4 O -0.30 -2.50 9.81 -19.49 -0.19 -2.69 16 5 C 0.08 0.69 6.62 -39.13 -0.26 0.44 16 6 C 0.10 0.86 11.13 -17.31 -0.19 0.67 16 7 N -0.45 -4.62 10.34 -12.80 -0.13 -4.75 16 8 C 0.10 0.94 10.71 -17.14 -0.18 0.75 16 9 C -0.14 -1.52 5.89 -104.84 -0.62 -2.14 16 10 C 0.56 6.95 7.78 -12.33 -0.10 6.85 16 11 O -0.54 -8.29 16.42 5.32 0.09 -8.20 16 12 N -0.71 -7.92 5.46 -61.24 -0.33 -8.26 16 13 C 0.09 1.10 5.31 -4.04 -0.02 1.08 16 14 C 0.09 1.29 3.09 -26.73 -0.08 1.20 16 15 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 16 O -0.55 -8.37 13.03 -35.23 -0.46 -8.83 16 17 C 0.13 2.38 5.92 -4.04 -0.02 2.36 16 18 N -0.73 -18.05 5.49 -59.91 -0.33 -18.38 16 19 C -0.25 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.11 -1.11 7.89 -38.72 -0.31 -1.42 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.46 6.98 -51.93 -0.36 0.09 16 31 H 0.08 0.49 6.32 -51.93 -0.33 0.16 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.16 1.28 6.42 -52.49 -0.34 0.94 16 37 H 0.41 3.86 6.53 -40.82 -0.27 3.59 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.37 4.75 9.04 45.56 0.41 5.16 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.39 10.39 7.54 -40.82 -0.31 10.08 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.15 1.47 5.28 -52.49 -0.28 1.19 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -34.20 379.64 -7.01 -41.21 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.66 Total: 12.56 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.41 Total: 1.72 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.07 Total: -58.80 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.56 Total: -19.72 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.20 -7.01 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753923000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.254 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds