Wall clock time and date at job start Tue Mar 31 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 O 1.42896 * 109.47342 * 119.99929 * 2 1 3 5 5 C 1.35920 * 117.00165 * 85.27843 * 4 2 1 6 6 C 1.38845 * 120.40957 * 174.60883 * 5 4 2 7 7 N 1.31883 * 121.00185 * 180.02562 * 6 5 4 8 8 C 1.31681 * 121.94102 * 0.02562 * 7 6 5 9 9 C 1.39525 * 120.69078 * 359.97438 * 8 7 6 10 10 C 1.47851 * 120.53095 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00081 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99779 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99813 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46939 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47421 * 304.99951 * 14 13 12 16 16 O 1.42898 * 109.47142 * 65.00476 * 14 13 12 17 17 C 1.53007 * 109.47064 * 185.00317 * 14 13 12 18 18 N 1.46491 * 109.47178 * 180.02562 * 17 14 13 19 19 C 1.36939 * 120.00291 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99247 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00220 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00362 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47414 * 89.99895 * 23 21 19 25 25 H 1.48497 * 109.47260 * 210.00612 * 23 21 19 26 26 H 1.48503 * 109.46908 * 329.99848 * 23 21 19 27 27 C 1.38843 * 120.40335 * 354.63560 * 5 4 2 28 28 H 1.09005 * 109.47020 * 299.99827 * 1 2 3 29 29 H 1.08994 * 109.47201 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47270 * 240.00189 * 2 1 3 32 32 H 1.08999 * 109.47019 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47240 * 300.00102 * 3 2 1 34 34 H 1.09005 * 109.47087 * 60.00214 * 3 2 1 35 35 H 1.08002 * 119.49827 * 0.02771 * 6 5 4 36 36 H 1.07999 * 119.65309 * 180.02562 * 8 7 6 37 37 H 0.97004 * 120.00253 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.47085 * 299.99982 * 13 12 10 39 39 H 1.09007 * 109.47159 * 60.00406 * 13 12 10 40 40 H 0.96688 * 114.00313 * 59.99633 * 16 14 13 41 41 H 1.09005 * 109.46597 * 299.99748 * 17 14 13 42 42 H 1.08998 * 109.47349 * 59.99716 * 17 14 13 43 43 H 0.97001 * 120.00028 * 359.97438 * 18 17 14 44 44 H 0.97003 * 120.00203 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.87874 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1181 -2.0263 1.0959 6 6 2.6777 -2.7413 2.1464 7 7 2.7923 -4.0539 2.0899 8 6 2.3862 -4.7443 1.0447 9 6 1.8126 -4.1026 -0.0535 10 6 1.3583 -4.8812 -1.2254 11 8 0.8603 -4.3123 -2.1771 12 7 1.4965 -6.2218 -1.2385 13 6 1.0469 -6.9932 -2.4000 14 6 1.3173 -8.4800 -2.1604 15 1 2.3716 -8.6242 -1.9246 16 8 0.5177 -8.9397 -1.0689 17 6 0.9637 -9.2722 -3.4207 18 7 1.2220 -10.6958 -3.1912 19 6 0.9776 -11.6051 -4.1855 20 1 0.5948 -11.2726 -5.1391 21 6 1.2228 -12.9540 -3.9681 22 7 1.6898 -13.3591 -2.8062 23 14 0.8902 -14.1942 -5.3248 24 1 2.1109 -14.3606 -6.1537 25 1 0.5194 -15.4997 -4.7219 26 1 -0.2246 -13.7084 -6.1771 27 6 1.6745 -2.7102 -0.0281 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.0244 -2.2144 3.0232 36 1 2.4976 -5.8185 1.0377 37 1 1.8942 -6.6758 -0.4791 38 1 -0.0216 -6.8372 -2.5483 39 1 1.5888 -6.6641 -3.2867 40 1 -0.4338 -8.8418 -1.2097 41 1 -0.0908 -9.1281 -3.6565 42 1 1.5735 -8.9216 -4.2534 43 1 1.5661 -10.9944 -2.3348 44 1 1.8608 -14.3018 -2.6542 45 1 1.2350 -2.1815 -0.8609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753923000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:14 Heat of formation + Delta-G solvation = -107.784728 kcal Electronic energy + Delta-G solvation = -26333.436781 eV Core-core repulsion = 22350.535291 eV Total energy + Delta-G solvation = -3982.901490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09114 -40.74869 -39.46679 -38.88007 -36.10042 -35.45778 -34.36123 -33.57890 -33.16656 -31.59841 -30.37807 -28.25211 -27.38142 -25.65448 -25.00905 -24.16698 -22.79514 -22.22947 -21.71116 -19.91154 -19.19241 -18.24934 -18.11908 -17.87201 -17.31474 -17.21448 -16.63406 -16.45739 -16.36163 -15.97060 -15.55677 -15.39247 -15.16961 -14.96512 -14.65330 -14.59679 -14.17138 -14.02908 -13.84241 -13.55573 -13.39169 -13.25432 -13.14118 -12.95324 -12.88009 -12.75226 -12.16043 -12.05298 -11.97298 -11.80682 -11.80291 -11.66223 -11.01907 -10.98568 -10.94174 -10.65299 -10.25938 -9.58967 -9.00208 -7.94363 -5.23699 -0.55326 0.05079 1.48164 1.49725 1.58133 1.66933 1.86855 1.98560 2.56220 2.67361 3.20161 3.36883 3.43209 3.48901 3.58718 3.66167 3.68106 3.75901 3.83882 3.92832 4.03186 4.08727 4.20499 4.30376 4.41829 4.61262 4.63713 4.68253 4.70864 4.75123 4.80479 4.82868 4.86126 4.94493 5.15914 5.17665 5.21606 5.24418 5.26440 5.48892 6.10836 6.26689 6.33148 6.71283 6.80153 6.98731 7.34202 8.09997 8.32815 9.28682 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.001911 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.360077 B =14650.973343 C =15286.635960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 C -0.144 4.144 4 O -0.305 6.305 5 C 0.077 3.923 6 C 0.098 3.902 7 N -0.462 5.462 8 C 0.097 3.903 9 C -0.154 4.154 10 C 0.563 3.437 11 O -0.571 6.571 12 N -0.702 5.702 13 C 0.102 3.898 14 C 0.107 3.893 15 H 0.104 0.896 16 O -0.562 6.562 17 C 0.122 3.878 18 N -0.739 5.739 19 C -0.248 4.248 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.269 1.269 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.415 0.585 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.385 0.615 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 30.754 8.934 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.010 3.990 3 C -0.201 4.201 4 O -0.218 6.218 5 C 0.029 3.971 6 C -0.061 4.061 7 N -0.170 5.170 8 C -0.061 4.061 9 C -0.159 4.159 10 C 0.350 3.650 11 O -0.452 6.452 12 N -0.353 5.353 13 C -0.023 4.023 14 C 0.047 3.953 15 H 0.122 0.878 16 O -0.369 6.369 17 C -0.006 4.006 18 N -0.383 5.383 19 C -0.380 4.380 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.194 1.194 27 C -0.143 4.143 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.208 0.792 36 H 0.198 0.802 37 H 0.253 0.747 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.234 0.766 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.643 30.657 9.182 32.009 hybrid contribution -0.855 -0.855 -1.328 1.796 sum -0.212 29.802 7.854 30.820 Atomic orbital electron populations 1.22384 0.94257 1.02614 1.04409 1.22794 0.95085 0.94801 0.86357 1.21876 1.02174 0.91789 1.04302 1.86163 1.81012 1.14569 1.40089 1.20073 0.97188 0.84745 0.95083 1.22869 0.96058 0.89096 0.98088 1.67830 1.16024 1.07563 1.25600 1.23177 0.93848 1.01370 0.87694 1.20749 1.04334 0.94408 0.96454 1.18203 0.78234 0.82330 0.86247 1.90761 1.46098 1.70910 1.37397 1.45720 1.62297 1.05841 1.21487 1.21957 1.01240 0.90322 0.88767 1.22117 0.96498 0.89856 0.86839 0.87837 1.86560 1.22370 1.86610 1.41352 1.21402 0.98536 0.84508 0.96131 1.42400 1.78901 1.01799 1.15155 1.19642 1.35256 0.88535 0.94587 0.90557 1.25586 1.02749 0.99086 0.99363 1.69831 1.52633 1.14916 1.24353 0.85135 0.77881 0.78302 0.78384 1.21406 1.22239 1.19418 1.21948 0.99756 0.93743 0.98837 0.90860 0.89129 0.93333 0.90894 0.91572 0.88590 0.90971 0.79166 0.80250 0.74709 0.90339 0.90013 0.76573 0.95077 0.94765 0.79030 0.94017 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.20 71.98 0.66 -1.29 16 2 C 0.07 0.77 2.85 30.60 0.09 0.85 16 3 C -0.14 -1.08 9.56 71.98 0.69 -0.39 16 4 O -0.31 -4.72 9.81 -92.65 -0.91 -5.63 16 5 C 0.08 1.34 6.62 22.56 0.15 1.49 16 6 C 0.10 1.62 11.13 84.83 0.94 2.57 16 7 N -0.46 -8.95 10.34 -194.40 -2.01 -10.96 16 8 C 0.10 1.79 10.71 85.03 0.91 2.70 16 9 C -0.15 -3.19 5.89 -20.01 -0.12 -3.30 16 10 C 0.56 13.57 7.78 86.79 0.68 14.25 16 11 O -0.57 -17.43 16.42 -3.86 -0.06 -17.50 16 12 N -0.70 -14.76 5.46 -465.96 -2.54 -17.30 16 13 C 0.10 2.36 5.31 86.38 0.46 2.82 16 14 C 0.11 2.99 3.09 30.60 0.09 3.08 16 15 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 16 O -0.56 -16.42 13.03 -148.98 -1.94 -18.36 16 17 C 0.12 4.44 5.92 86.38 0.51 4.95 16 18 N -0.74 -36.60 5.49 -343.46 -1.89 -38.49 16 19 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 22 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 23 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.12 -2.25 7.89 22.83 0.18 -2.07 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.68 6.98 -2.39 -0.02 0.66 16 31 H 0.07 0.90 6.32 -2.39 -0.02 0.89 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.18 2.54 6.42 -2.91 -0.02 2.52 16 37 H 0.41 7.27 6.53 -92.71 -0.61 6.66 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.39 9.26 9.04 -74.06 -0.67 8.59 16 41 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.38 20.27 7.54 -92.71 -0.70 19.58 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 45 H 0.15 2.93 5.28 -2.91 -0.02 2.91 16 Total: -1.00 -72.30 379.64 -1.42 -73.72 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.93 Total: 36.63 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.55 Total: 8.91 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -6.16 Total: -125.71 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.91 Total: -41.48 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -72.30 -1.42 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753923000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.065 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds