Wall clock time and date at job start Tue Mar 31 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47015 * 2 1 4 4 O 1.42901 * 109.46969 * 119.99724 * 2 1 3 5 5 C 1.35690 * 116.99905 * 150.00259 * 4 2 1 6 6 C 1.38890 * 119.62014 * 180.02562 * 5 4 2 7 7 C 1.39577 * 118.94145 * 179.70043 * 6 5 4 8 8 C 1.48166 * 120.88746 * 180.30000 * 7 6 5 9 9 O 1.21512 * 120.00490 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99653 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99819 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46992 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47353 * 59.99773 * 12 11 10 14 14 O 1.42902 * 109.46999 * 299.99676 * 12 11 10 15 15 C 1.53001 * 109.47062 * 179.97438 * 12 11 10 16 16 N 1.46502 * 109.47017 * 184.99646 * 15 12 11 17 17 C 1.36939 * 119.99701 * 179.97438 * 16 15 12 18 18 H 1.08001 * 120.00056 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99761 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00042 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99809 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47381 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46784 * 120.00051 * 21 19 17 24 24 H 1.48495 * 109.47180 * 239.99824 * 21 19 17 25 25 C 1.39966 * 118.21761 * 0.27329 * 7 6 5 26 26 C 1.37970 * 119.13670 * 0.02562 * 25 7 6 27 27 N 1.31914 * 120.97746 * 359.97438 * 26 25 7 28 28 H 1.08995 * 109.47430 * 300.00438 * 1 2 3 29 29 H 1.09002 * 109.46917 * 60.00149 * 1 2 3 30 30 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47552 * 239.99804 * 2 1 3 32 32 H 1.09002 * 109.46995 * 60.00074 * 3 2 1 33 33 H 1.08997 * 109.46834 * 179.97438 * 3 2 1 34 34 H 1.08988 * 109.47162 * 299.99877 * 3 2 1 35 35 H 1.08002 * 120.53211 * 359.97438 * 6 5 4 36 36 H 0.96993 * 119.99839 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.47068 * 299.99749 * 11 10 8 38 38 H 1.09002 * 109.47256 * 59.99686 * 11 10 8 39 39 H 0.96693 * 114.00290 * 300.00393 * 14 12 11 40 40 H 1.08998 * 109.46985 * 305.00253 * 15 12 11 41 41 H 1.09005 * 109.47058 * 64.99990 * 15 12 11 42 42 H 0.97000 * 120.00236 * 0.02562 * 16 15 12 43 43 H 0.97005 * 120.00427 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.42819 * 180.02562 * 25 7 6 45 45 H 1.08000 * 119.51528 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1988 -1.3130 1.0654 6 6 3.7129 -1.9858 2.1663 7 6 4.9376 -2.6439 2.0443 8 6 5.5227 -3.3804 3.1892 9 8 4.9355 -3.4167 4.2523 10 7 6.7069 -4.0092 3.0516 11 6 7.2857 -4.7370 4.1837 12 6 8.6212 -5.3542 3.7640 13 1 9.3046 -4.5644 3.4522 14 8 8.4081 -6.2565 2.6766 15 6 9.2260 -6.1137 4.9465 16 7 10.5578 -6.6036 4.5826 17 6 11.2965 -7.3162 5.4890 18 1 10.8974 -7.5169 6.4723 19 6 12.5587 -7.7799 5.1443 20 7 13.0457 -7.5341 3.9466 21 14 13.5667 -8.7515 6.3811 22 1 12.8002 -8.8888 7.6456 23 1 13.8602 -10.0992 5.8307 24 1 14.8411 -8.0384 6.6503 25 6 5.5980 -2.5900 0.8114 26 6 5.0202 -1.8939 -0.2302 27 7 3.8606 -1.2835 -0.0784 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 3.1714 -2.0031 3.1007 36 1 7.1758 -3.9799 2.2030 37 1 7.4478 -4.0488 5.0134 38 1 6.6025 -5.5271 4.4952 39 1 7.8086 -6.9866 2.8829 40 1 9.3062 -5.4461 5.8044 41 1 8.5856 -6.9581 5.2019 42 1 10.9168 -6.4224 3.6998 43 1 13.9276 -7.8584 3.7055 44 1 6.5475 -3.0869 0.6773 45 1 5.5246 -1.8480 -1.1841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753933263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:49 Heat of formation + Delta-G solvation = -107.810902 kcal Electronic energy + Delta-G solvation = -26078.510208 eV Core-core repulsion = 22095.607583 eV Total energy + Delta-G solvation = -3982.902625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99078 -40.80154 -39.23728 -38.80146 -36.11889 -35.46751 -34.26945 -33.80723 -33.16714 -31.30365 -30.52828 -28.17525 -27.47950 -25.81686 -24.51066 -24.21127 -22.79909 -22.73614 -21.38664 -19.93513 -19.19075 -18.33335 -18.09661 -17.24477 -17.10501 -16.94482 -16.78034 -16.47258 -16.32276 -15.96544 -15.51692 -15.42540 -15.18557 -14.93294 -14.85080 -14.63843 -14.28234 -14.09615 -13.84860 -13.31983 -13.25027 -13.19506 -13.02807 -12.95533 -12.87282 -12.78315 -12.11753 -11.97991 -11.93746 -11.82106 -11.79424 -11.51844 -11.09802 -11.02052 -10.94788 -10.67825 -10.25378 -9.60896 -9.00228 -7.94872 -5.23887 -0.45166 0.06186 1.48677 1.48916 1.59043 1.68824 1.71483 2.12224 2.56282 2.72439 3.20871 3.35702 3.40641 3.52210 3.57818 3.84386 3.87502 3.97797 4.00255 4.02419 4.03546 4.21643 4.27338 4.39887 4.59278 4.60992 4.65127 4.69232 4.74444 4.82519 4.84528 4.88509 4.95124 4.95518 5.17182 5.19904 5.23508 5.25589 5.35062 5.49454 6.20348 6.26639 6.34072 6.70313 6.79987 6.98813 7.34140 8.09426 8.32318 9.28419 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.042257 B = 0.001763 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.454912 B =15880.993148 C =16271.049394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.164 4.164 4 O -0.315 6.315 5 C 0.312 3.688 6 C -0.153 4.153 7 C -0.060 4.060 8 C 0.557 3.443 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.100 3.900 12 C 0.109 3.891 13 H 0.104 0.896 14 O -0.561 6.561 15 C 0.121 3.879 16 N -0.739 5.739 17 C -0.248 4.248 18 H 0.076 0.924 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.170 4.170 26 C 0.144 3.856 27 N -0.532 5.532 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.418 0.582 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.386 0.614 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.171 0.829 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 16.138 -12.174 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.222 4.222 4 O -0.223 6.223 5 C 0.134 3.866 6 C -0.175 4.175 7 C -0.070 4.070 8 C 0.344 3.656 9 O -0.449 6.449 10 N -0.349 5.349 11 C -0.025 4.025 12 C 0.049 3.951 13 H 0.122 0.878 14 O -0.368 6.368 15 C -0.006 4.006 16 N -0.382 5.382 17 C -0.380 4.380 18 H 0.094 0.906 19 C -0.266 4.266 20 N -0.617 5.617 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.190 4.190 26 C -0.012 4.012 27 N -0.257 5.257 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.158 0.842 36 H 0.256 0.744 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.235 0.765 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.189 0.811 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -24.175 16.912 -11.996 31.849 hybrid contribution 1.120 -1.283 1.024 1.987 sum -23.055 15.629 -10.972 29.936 Atomic orbital electron populations 1.21932 0.91287 1.03177 1.04095 1.22618 0.95693 0.92949 0.86892 1.22193 1.01196 0.95163 1.03602 1.86310 1.31297 1.64509 1.40174 1.19672 0.86745 0.90639 0.89565 1.21090 0.96700 1.00211 0.99455 1.20033 0.94778 0.97613 0.94620 1.18337 0.81119 0.78864 0.87251 1.90779 1.62056 1.62604 1.29469 1.45640 1.20815 1.51912 1.16503 1.21961 0.94566 0.96794 0.89152 1.22088 0.94067 0.91705 0.87244 0.87815 1.86553 1.70864 1.41590 1.37788 1.21418 0.86752 0.96367 0.96077 1.42406 1.15194 1.65205 1.15411 1.19682 0.97307 1.25533 0.95466 0.90588 1.25561 0.99117 1.03265 0.98699 1.69828 1.18449 1.52421 1.21022 0.85084 0.78429 0.77685 0.78601 1.19079 1.22052 1.22054 1.22501 1.02698 1.01935 0.91914 1.23065 0.88667 0.89349 1.00116 1.67244 1.11225 1.23231 1.23965 0.91643 0.88223 0.92173 0.89530 0.92103 0.93369 0.88969 0.84193 0.74386 0.90151 0.90369 0.76514 0.94815 0.95060 0.79066 0.94002 0.81147 0.77883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.56 71.98 0.69 -0.83 16 2 C 0.07 1.08 3.10 30.59 0.09 1.18 16 3 C -0.16 -2.04 9.53 71.98 0.69 -1.36 16 4 O -0.31 -6.50 9.76 -90.09 -0.88 -7.38 16 5 C 0.31 6.61 7.45 84.80 0.63 7.24 16 6 C -0.15 -3.45 9.61 22.75 0.22 -3.23 16 7 C -0.06 -1.22 5.91 -19.90 -0.12 -1.34 16 8 C 0.56 13.60 7.80 86.88 0.68 14.28 16 9 O -0.57 -18.31 16.44 -3.75 -0.06 -18.37 16 10 N -0.70 -14.18 5.41 -465.65 -2.52 -16.69 16 11 C 0.10 2.30 5.34 86.38 0.46 2.76 16 12 C 0.11 2.97 3.09 30.59 0.09 3.06 16 13 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 14 O -0.56 -15.45 13.03 -148.98 -1.94 -17.39 16 15 C 0.12 4.38 5.90 86.38 0.51 4.89 16 16 N -0.74 -36.21 5.55 -343.44 -1.91 -38.12 16 17 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 18 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 21 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 C -0.17 -2.35 9.61 22.63 0.22 -2.13 16 26 C 0.14 1.85 11.17 84.62 0.94 2.80 16 27 N -0.53 -9.57 8.62 -309.13 -2.66 -12.24 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.31 6.99 -2.38 -0.02 1.29 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.14 3.42 7.74 -2.91 -0.02 3.40 16 36 H 0.42 6.66 6.49 -92.71 -0.60 6.06 16 37 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.39 8.60 9.05 -74.06 -0.67 7.93 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.38 19.96 7.67 -92.71 -0.71 19.25 16 43 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 44 H 0.17 1.40 6.53 -2.91 -0.02 1.38 16 45 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -73.83 384.51 -2.20 -76.03 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.95 Total: 34.06 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.41 Total: 10.80 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.80 Total: -125.43 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -2.88 Total: -43.14 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.83 -2.20 -76.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753933263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.783 kcal (2) G-P(sol) polarization free energy of solvation -73.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds