Wall clock time and date at job start Tue Mar 31 2020 13:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 O 1.42901 * 109.47149 * 120.00135 * 2 1 3 5 5 C 1.35682 * 116.99708 * 149.99337 * 4 2 1 6 6 C 1.38898 * 119.62023 * 179.97438 * 5 4 2 7 7 C 1.39577 * 118.94349 * 179.72966 * 6 5 4 8 8 C 1.48164 * 120.88747 * 180.23716 * 7 6 5 9 9 O 1.21511 * 120.00433 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00015 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00526 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47355 * 179.97438 * 11 10 8 13 13 H 1.08991 * 109.47050 * 304.99757 * 12 11 10 14 14 O 1.42899 * 109.47171 * 64.99951 * 12 11 10 15 15 C 1.53007 * 109.47131 * 184.99843 * 12 11 10 16 16 N 1.46494 * 109.46958 * 180.02562 * 15 12 11 17 17 C 1.36944 * 119.99823 * 180.02562 * 16 15 12 18 18 H 1.08004 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00161 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00311 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99801 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47346 * 90.00138 * 21 19 17 23 23 H 1.48501 * 109.46880 * 209.99866 * 21 19 17 24 24 H 1.48495 * 109.47148 * 329.99606 * 21 19 17 25 25 C 1.39965 * 118.21780 * 0.25481 * 7 6 5 26 26 C 1.37970 * 119.13650 * 359.97438 * 25 7 6 27 27 N 1.31914 * 120.97767 * 0.02562 * 26 25 7 28 28 H 1.09002 * 109.46644 * 299.99786 * 1 2 3 29 29 H 1.08997 * 109.47480 * 59.99499 * 1 2 3 30 30 H 1.09000 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46644 * 240.00214 * 2 1 3 32 32 H 1.09005 * 109.47036 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47332 * 300.00119 * 3 2 1 34 34 H 1.09002 * 109.47169 * 60.00535 * 3 2 1 35 35 H 1.08002 * 120.53005 * 0.02562 * 6 5 4 36 36 H 0.97003 * 119.99557 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47110 * 299.99632 * 11 10 8 38 38 H 1.09000 * 109.47303 * 59.99527 * 11 10 8 39 39 H 0.96702 * 113.99672 * 59.99701 * 14 12 11 40 40 H 1.09005 * 109.47031 * 300.00010 * 15 12 11 41 41 H 1.08997 * 109.46991 * 59.99721 * 15 12 11 42 42 H 0.96994 * 120.00195 * 359.97438 * 16 15 12 43 43 H 0.97000 * 120.00560 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.42868 * 179.97438 * 25 7 6 45 45 H 1.07999 * 119.51493 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1987 -1.3131 1.0651 6 6 3.7134 -1.9851 2.1664 7 6 4.9384 -2.6430 2.0444 8 6 5.5247 -3.3774 3.1899 9 8 4.9383 -3.4123 4.2536 10 7 6.7090 -4.0059 3.0524 11 6 7.2890 -4.7316 4.1851 12 6 8.6245 -5.3489 3.7653 13 1 8.4761 -5.9695 2.8817 14 8 9.5570 -4.3084 3.4656 15 6 9.1700 -6.2093 4.9070 16 7 10.4490 -6.7998 4.5053 17 6 11.1289 -7.6146 5.3709 18 1 10.7224 -7.8213 6.3499 19 6 12.3406 -8.1746 4.9901 20 7 12.9944 -8.9572 5.8222 21 14 13.0441 -7.8164 3.2971 22 1 13.9067 -6.6095 3.3647 23 1 13.8509 -8.9766 2.8407 24 1 11.9339 -7.5784 2.3400 25 6 5.5982 -2.5899 0.8112 26 6 5.0191 -1.8957 -0.2311 27 7 3.8594 -1.2857 -0.0793 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1721 -2.0025 3.1008 36 1 7.1773 -3.9777 2.2034 37 1 7.4516 -4.0421 5.0136 38 1 6.6065 -5.5216 4.4985 39 1 9.7373 -3.7160 4.2083 40 1 9.3184 -5.5886 5.7907 41 1 8.4587 -7.0029 5.1357 42 1 10.8139 -6.6144 3.6259 43 1 13.8413 -9.3483 5.5563 44 1 6.5482 -3.0858 0.6773 45 1 5.5231 -1.8505 -1.1852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753933264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:52 Heat of formation + Delta-G solvation = -105.220419 kcal Electronic energy + Delta-G solvation = -26158.998811 eV Core-core repulsion = 22176.208518 eV Total energy + Delta-G solvation = -3982.790293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99499 -40.80940 -39.26590 -38.84533 -36.22236 -35.50024 -34.27546 -33.81747 -33.44651 -31.36183 -30.76638 -28.18250 -27.63573 -25.74840 -24.46471 -23.97805 -22.86767 -22.74130 -21.41337 -20.02771 -19.66805 -18.34326 -18.08039 -17.29324 -17.06091 -16.93914 -16.78079 -16.52689 -16.37458 -15.97634 -15.51030 -15.37210 -15.26136 -14.99759 -14.86020 -14.72315 -14.29054 -14.17529 -13.96107 -13.38196 -13.30538 -13.20472 -13.19266 -13.03246 -12.87803 -12.80185 -12.23175 -11.95837 -11.88285 -11.83149 -11.80670 -11.53142 -11.10265 -11.04113 -10.98884 -10.68163 -10.26049 -9.61166 -9.30851 -8.02841 -5.36768 -0.45356 0.05879 1.40662 1.44095 1.51390 1.68004 1.71422 2.11679 2.49556 2.72200 3.19813 3.27751 3.31649 3.45065 3.54075 3.83904 3.87012 3.96811 3.99315 3.99386 4.02154 4.10776 4.20279 4.26747 4.58890 4.59237 4.64302 4.68608 4.74537 4.82017 4.83920 4.87856 4.93899 4.94733 5.14608 5.18751 5.22350 5.24899 5.34789 5.74538 6.20081 6.20369 6.33524 6.70206 6.76013 6.98869 7.08614 7.83680 8.03277 9.18371 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.001896 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.719993 B =14762.615294 C =15313.284231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.164 4.164 4 O -0.316 6.316 5 C 0.312 3.688 6 C -0.154 4.154 7 C -0.060 4.060 8 C 0.557 3.443 9 O -0.570 6.570 10 N -0.696 5.696 11 C 0.098 3.902 12 C 0.107 3.893 13 H 0.114 0.886 14 O -0.562 6.562 15 C 0.122 3.878 16 N -0.751 5.751 17 C -0.239 4.239 18 H 0.056 0.944 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.961 3.039 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.250 1.250 25 C -0.169 4.169 26 C 0.143 3.857 27 N -0.533 5.533 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.139 0.861 36 H 0.418 0.582 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.389 0.611 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.370 0.630 43 H 0.258 0.742 44 H 0.174 0.826 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.091 21.360 -18.422 36.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.222 4.222 4 O -0.223 6.223 5 C 0.134 3.866 6 C -0.176 4.176 7 C -0.070 4.070 8 C 0.344 3.656 9 O -0.449 6.449 10 N -0.348 5.348 11 C -0.026 4.026 12 C 0.047 3.953 13 H 0.132 0.868 14 O -0.369 6.369 15 C -0.005 4.005 16 N -0.398 5.398 17 C -0.370 4.370 18 H 0.074 0.926 19 C -0.255 4.255 20 N -0.634 5.634 21 Si 0.788 3.212 22 H -0.205 1.205 23 H -0.224 1.224 24 H -0.175 1.175 25 C -0.190 4.190 26 C -0.012 4.012 27 N -0.257 5.257 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.257 0.743 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.238 0.762 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.204 0.796 43 H 0.067 0.933 44 H 0.191 0.809 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -24.034 21.419 -18.502 37.131 hybrid contribution 1.269 -0.437 0.567 1.457 sum -22.765 20.982 -17.935 35.779 Atomic orbital electron populations 1.21936 0.91330 1.03165 1.04087 1.22614 0.95670 0.92955 0.86897 1.22194 1.01209 0.95153 1.03595 1.86309 1.31353 1.64504 1.40182 1.19674 0.86738 0.90647 0.89574 1.21099 0.96783 1.00278 0.99429 1.20033 0.94722 0.97606 0.94664 1.18336 0.81154 0.78857 0.87242 1.90788 1.62172 1.62449 1.29525 1.45622 1.20576 1.52201 1.16445 1.21969 0.94701 0.96854 0.89125 1.22142 0.86285 0.88271 0.98633 0.86807 1.86518 1.64310 1.43595 1.42486 1.21399 0.87108 0.95680 0.96290 1.42507 1.22922 1.57929 1.16406 1.19045 1.01255 1.20035 0.96669 0.92627 1.25538 0.98022 0.99715 1.02267 1.69890 1.17404 1.38091 1.37997 0.85330 0.78594 0.76918 0.80395 1.20529 1.22418 1.17466 1.22506 1.02690 1.01964 0.91799 1.23080 0.88630 0.89358 1.00172 1.67240 1.11312 1.23230 1.23947 0.91676 0.88219 0.92189 0.89498 0.93328 0.88980 0.92122 0.84305 0.74316 0.90428 0.90126 0.76192 0.94701 0.94406 0.79611 0.93316 0.80910 0.77848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.56 71.98 0.69 -0.76 16 2 C 0.07 1.04 3.11 30.59 0.09 1.14 16 3 C -0.16 -1.94 9.53 71.98 0.69 -1.25 16 4 O -0.32 -6.31 9.76 -90.00 -0.88 -7.19 16 5 C 0.31 6.33 7.45 84.80 0.63 6.96 16 6 C -0.15 -3.34 9.61 22.75 0.22 -3.12 16 7 C -0.06 -1.13 5.91 -19.90 -0.12 -1.25 16 8 C 0.56 12.72 7.80 86.88 0.68 13.40 16 9 O -0.57 -17.71 16.44 -3.75 -0.06 -17.77 16 10 N -0.70 -12.54 5.46 -465.68 -2.54 -15.08 16 11 C 0.10 2.03 5.31 86.38 0.46 2.49 16 12 C 0.11 2.51 3.09 30.60 0.09 2.60 16 13 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 14 O -0.56 -13.11 13.03 -148.98 -1.94 -15.06 16 15 C 0.12 4.10 5.92 86.38 0.51 4.62 16 16 N -0.75 -33.38 5.30 -343.44 -1.82 -35.20 16 17 C -0.24 -13.44 10.47 84.03 0.88 -12.56 16 18 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 19 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 20 N -0.98 -62.71 13.97 21.65 0.30 -62.41 16 21 Si 0.96 44.96 27.74 68.60 1.90 46.86 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.25 -10.47 6.52 99.48 0.65 -9.83 16 25 C -0.17 -2.03 9.61 22.62 0.22 -1.81 16 26 C 0.14 1.63 11.17 84.62 0.94 2.58 16 27 N -0.53 -9.01 8.62 -309.14 -2.66 -11.67 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.25 6.98 -2.39 -0.02 1.24 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 3.30 7.74 -2.91 -0.02 3.28 16 36 H 0.42 5.37 6.61 -92.71 -0.61 4.75 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.39 7.34 9.05 -74.06 -0.67 6.67 16 40 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.37 15.85 5.40 -92.71 -0.50 15.35 16 43 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.17 0.98 6.53 -2.91 -0.02 0.96 16 45 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -77.58 381.39 -2.06 -79.64 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.81 Total: 28.10 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 6.45 Total: 9.78 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.72 Total: -124.36 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.88 Total: -40.02 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -77.58 -2.06 -79.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753933264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.577 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds