Wall clock time and date at job start Tue Mar 31 2020 14:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35500 * 116.99961 * 2 1 4 4 C 1.39213 * 120.90247 * 359.97438 * 3 2 1 5 5 C 1.37902 * 119.39137 * 180.02562 * 4 3 2 6 6 N 1.32078 * 121.29062 * 0.02562 * 5 4 3 7 7 C 1.32187 * 121.97927 * 359.69454 * 6 5 4 8 8 O 1.35424 * 119.77580 * 180.29415 * 7 6 5 9 9 C 1.42897 * 117.00210 * 0.29715 * 8 7 6 10 10 C 1.40292 * 120.44241 * 0.58805 * 7 6 5 11 11 C 1.47228 * 120.65257 * 179.70471 * 10 7 6 12 12 O 1.21631 * 119.99533 * 269.72348 * 11 10 7 13 13 N 1.34773 * 120.00325 * 89.72567 * 11 10 7 14 14 C 1.46502 * 120.00306 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.46581 * 325.00172 * 14 13 11 16 16 C 1.52997 * 109.46969 * 84.99801 * 14 13 11 17 17 C 1.52992 * 109.47005 * 205.00035 * 14 13 11 18 18 C 1.52997 * 109.47482 * 64.99872 * 17 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 14 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 H 1.08997 * 109.46870 * 300.00179 * 1 2 3 29 29 H 1.08997 * 109.46857 * 60.00119 * 1 2 3 30 30 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.30062 * 0.04514 * 4 3 2 32 32 H 1.08002 * 119.35257 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47067 * 299.99381 * 9 8 7 34 34 H 1.08997 * 109.47358 * 59.99669 * 9 8 7 35 35 H 1.09005 * 109.47154 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99459 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.47224 * 299.99986 * 16 14 13 38 38 H 1.09000 * 109.47346 * 59.99964 * 16 14 13 39 39 H 1.09007 * 109.46964 * 180.02562 * 16 14 13 40 40 H 1.09002 * 109.47103 * 304.99625 * 17 14 13 41 41 H 1.08998 * 109.46862 * 185.00437 * 17 14 13 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 44 44 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 45 45 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3866 -0.0005 5 6 1.9627 3.5984 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0356 2.5765 0.0044 8 8 5.3847 2.6942 0.0096 9 6 5.9204 4.0189 0.0149 10 6 3.4472 1.3029 -0.0009 11 6 4.2822 0.0903 -0.0008 12 8 4.6267 -0.4108 -1.0542 13 7 4.6648 -0.4644 1.1663 14 6 5.4961 -1.6707 1.1664 15 1 5.2168 -2.3044 0.3246 16 6 6.9687 -1.2752 1.0404 17 6 5.2837 -2.4364 2.4738 18 6 3.8404 -2.9395 2.5415 19 7 3.6372 -3.6732 3.7932 20 6 2.4137 -4.2192 4.0759 21 1 1.5985 -4.1094 3.3759 22 6 2.2210 -4.9139 5.2620 23 7 3.2142 -5.0474 6.1154 24 14 0.5521 -5.6595 5.6474 25 1 -0.3878 -5.3711 4.5344 26 1 0.6917 -7.1291 5.8085 27 1 0.0258 -5.0714 6.9053 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2250 2.3528 -0.0002 32 1 1.3882 4.5130 -0.0010 33 1 5.5836 4.5506 -0.8750 34 1 5.5770 4.5462 0.9049 35 1 7.0094 3.9705 0.0192 36 1 4.3902 -0.0645 2.0063 37 1 7.1200 -0.7297 0.1088 38 1 7.2480 -0.6414 1.8820 39 1 7.5872 -2.1728 1.0399 40 1 5.4778 -1.7747 3.3180 41 1 5.9666 -3.2850 2.5128 42 1 3.6462 -3.6011 1.6973 43 1 3.1576 -2.0907 2.5025 44 1 4.3692 -3.7715 4.4220 45 1 3.0795 -5.5325 6.9445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753981079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:51 Heat of formation + Delta-G solvation = -63.489177 kcal Electronic energy + Delta-G solvation = -27838.059686 eV Core-core repulsion = 23857.078995 eV Total energy + Delta-G solvation = -3980.980691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32203 -39.41210 -39.25352 -37.54356 -36.35835 -34.26293 -32.55240 -31.54781 -31.06113 -30.24811 -28.22189 -27.79540 -27.09542 -24.95043 -23.88144 -22.75793 -21.80439 -20.99652 -20.34249 -19.20482 -17.99031 -17.69409 -16.99457 -16.76184 -16.53736 -16.00339 -15.88455 -15.42933 -14.86222 -14.76022 -14.39028 -14.04662 -13.95341 -13.73595 -13.52215 -13.39755 -13.23147 -12.97826 -12.77365 -12.24832 -12.12871 -11.95656 -11.77582 -11.72577 -11.41931 -11.15128 -10.99616 -10.76341 -10.58836 -10.50406 -10.37005 -9.99415 -9.68894 -9.62644 -9.19950 -8.90077 -8.89257 -8.79734 -6.88987 -5.74697 -3.02885 0.66278 1.00747 2.38405 2.71922 3.17166 3.25671 3.43288 3.45261 3.48527 3.51097 4.02981 4.33900 4.58892 4.63596 4.71693 4.84519 4.91230 5.00133 5.01452 5.06665 5.17473 5.27584 5.32077 5.37508 5.43355 5.46489 5.59059 5.60785 5.77633 5.81417 5.87306 6.02997 6.14590 6.31460 6.37717 6.43074 6.67778 6.82489 6.89586 6.90169 6.95147 7.49438 7.68707 7.72335 8.37974 8.44552 9.55403 10.14303 10.49295 11.48483 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003435 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.226960 B = 8148.729964 C = 9500.295910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.293 6.293 3 C 0.237 3.763 4 C -0.300 4.300 5 C 0.189 3.811 6 N -0.563 5.563 7 C 0.386 3.614 8 O -0.295 6.295 9 C 0.041 3.959 10 C -0.237 4.237 11 C 0.591 3.409 12 O -0.534 6.534 13 N -0.706 5.706 14 C 0.146 3.854 15 H 0.089 0.911 16 C -0.160 4.160 17 C -0.134 4.134 18 C 0.154 3.846 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 20.410 -13.028 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.202 6.202 3 C 0.182 3.818 4 C -0.321 4.321 5 C 0.034 3.966 6 N -0.291 5.291 7 C 0.207 3.793 8 O -0.200 6.200 9 C -0.054 4.054 10 C -0.244 4.244 11 C 0.375 3.625 12 O -0.410 6.410 13 N -0.356 5.356 14 C 0.041 3.959 15 H 0.107 0.893 16 C -0.218 4.218 17 C -0.172 4.172 18 C 0.027 3.973 19 N -0.379 5.379 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.809 20.331 -13.808 24.590 hybrid contribution -1.593 -0.640 0.963 1.969 sum -0.784 19.691 -12.845 23.523 Atomic orbital electron populations 1.23283 0.76630 1.05309 1.01758 1.86139 1.22700 1.25290 1.86039 1.18902 0.89906 0.85417 0.87584 1.22009 1.01928 0.92439 1.15768 1.22262 0.88429 0.97328 0.88597 1.67419 1.07991 1.30306 1.23338 1.19311 0.84492 0.87467 0.88014 1.86248 1.15322 1.31889 1.86588 1.22945 0.98702 0.81113 1.02681 1.18949 0.91414 0.93590 1.20418 1.17342 0.78689 0.82310 0.84171 1.90776 1.56151 1.62763 1.31353 1.46038 1.52594 1.28860 1.08106 1.20996 0.89831 0.85515 0.99553 0.89330 1.22151 0.95706 1.01883 1.02060 1.22057 0.99529 0.99997 0.95664 1.20632 0.92381 0.94319 0.89978 1.42386 1.12169 1.64292 1.19005 1.19275 0.89180 1.26420 1.01782 0.91244 1.24733 0.97632 1.01552 0.97244 1.69668 1.30505 1.47129 1.11040 0.86127 0.83613 0.78797 0.77740 1.20612 1.21868 1.21914 0.91729 0.92058 0.87138 0.83427 0.81644 0.91997 0.91911 0.88306 0.76507 0.92294 0.92536 0.91607 0.91426 0.90232 0.96395 0.96249 0.78354 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 101.05 0.99 1.20 16 2 O -0.29 -3.90 10.03 -18.19 -0.18 -4.08 16 3 C 0.24 3.02 6.74 -38.32 -0.26 2.77 16 4 C -0.30 -2.77 9.09 -39.34 -0.36 -3.13 16 5 C 0.19 1.66 11.15 -17.57 -0.20 1.46 16 6 N -0.56 -6.35 9.20 -13.06 -0.12 -6.47 16 7 C 0.39 5.10 7.51 -16.63 -0.12 4.97 16 8 O -0.29 -3.74 9.93 -17.96 -0.18 -3.92 16 9 C 0.04 0.34 10.38 101.05 1.05 1.39 16 10 C -0.24 -3.43 5.66 -104.57 -0.59 -4.02 16 11 C 0.59 9.80 6.38 -12.61 -0.08 9.72 16 12 O -0.53 -10.56 16.77 5.25 0.09 -10.48 16 13 N -0.71 -10.60 4.53 -54.95 -0.25 -10.85 16 14 C 0.15 2.20 2.57 -67.93 -0.17 2.02 16 15 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 16 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 17 C -0.13 -2.20 4.87 -26.74 -0.13 -2.33 16 18 C 0.15 3.22 6.15 -4.04 -0.02 3.20 16 19 N -0.73 -19.00 5.60 -59.91 -0.34 -19.34 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 24 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H 0.06 0.46 7.71 -51.93 -0.40 0.06 16 29 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.15 0.91 6.45 -52.49 -0.34 0.57 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 5.55 8.59 -40.82 -0.35 5.20 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 44 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -36.24 384.30 -6.07 -42.31 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.79 Total: 9.20 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 0.21 Total: 8.10 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: 0.02 Total: -64.43 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.27 Total: -18.48 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.24 -6.07 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753981079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.182 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds