Wall clock time and date at job start Tue Mar 31 2020 14:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35500 * 116.99961 * 2 1 4 4 C 1.39213 * 120.90247 * 359.97438 * 3 2 1 5 5 C 1.37902 * 119.39137 * 180.02562 * 4 3 2 6 6 N 1.32078 * 121.29062 * 0.02562 * 5 4 3 7 7 C 1.32187 * 121.97927 * 359.69454 * 6 5 4 8 8 O 1.35424 * 119.77580 * 180.29415 * 7 6 5 9 9 C 1.42897 * 117.00210 * 0.29715 * 8 7 6 10 10 C 1.40292 * 120.44241 * 0.58805 * 7 6 5 11 11 C 1.47228 * 120.65257 * 179.70471 * 10 7 6 12 12 O 1.21631 * 119.99533 * 269.72348 * 11 10 7 13 13 N 1.34773 * 120.00325 * 89.72567 * 11 10 7 14 14 C 1.46502 * 120.00306 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.46581 * 325.00172 * 14 13 11 16 16 C 1.52997 * 109.46969 * 84.99801 * 14 13 11 17 17 C 1.52992 * 109.47005 * 205.00035 * 14 13 11 18 18 C 1.52997 * 109.47482 * 64.99872 * 17 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 14 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 H 1.08997 * 109.46870 * 300.00179 * 1 2 3 29 29 H 1.08997 * 109.46857 * 60.00119 * 1 2 3 30 30 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.30062 * 0.04514 * 4 3 2 32 32 H 1.08002 * 119.35257 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47067 * 299.99381 * 9 8 7 34 34 H 1.08997 * 109.47358 * 59.99669 * 9 8 7 35 35 H 1.09005 * 109.47154 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99459 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.47224 * 299.99986 * 16 14 13 38 38 H 1.09000 * 109.47346 * 59.99964 * 16 14 13 39 39 H 1.09007 * 109.46964 * 180.02562 * 16 14 13 40 40 H 1.09002 * 109.47103 * 304.99625 * 17 14 13 41 41 H 1.08998 * 109.46862 * 185.00437 * 17 14 13 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 44 44 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 45 45 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3866 -0.0005 5 6 1.9627 3.5984 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0356 2.5765 0.0044 8 8 5.3847 2.6942 0.0096 9 6 5.9204 4.0189 0.0149 10 6 3.4472 1.3029 -0.0009 11 6 4.2822 0.0903 -0.0008 12 8 4.6267 -0.4108 -1.0542 13 7 4.6648 -0.4644 1.1663 14 6 5.4961 -1.6707 1.1664 15 1 5.2168 -2.3044 0.3246 16 6 6.9687 -1.2752 1.0404 17 6 5.2837 -2.4364 2.4738 18 6 3.8404 -2.9395 2.5415 19 7 3.6372 -3.6732 3.7932 20 6 2.4137 -4.2192 4.0759 21 1 1.5985 -4.1094 3.3759 22 6 2.2210 -4.9139 5.2620 23 7 3.2142 -5.0474 6.1154 24 14 0.5521 -5.6595 5.6474 25 1 -0.3878 -5.3711 4.5344 26 1 0.6917 -7.1291 5.8085 27 1 0.0258 -5.0714 6.9053 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2250 2.3528 -0.0002 32 1 1.3882 4.5130 -0.0010 33 1 5.5836 4.5506 -0.8750 34 1 5.5770 4.5462 0.9049 35 1 7.0094 3.9705 0.0192 36 1 4.3902 -0.0645 2.0063 37 1 7.1200 -0.7297 0.1088 38 1 7.2480 -0.6414 1.8820 39 1 7.5872 -2.1728 1.0399 40 1 5.4778 -1.7747 3.3180 41 1 5.9666 -3.2850 2.5128 42 1 3.6462 -3.6011 1.6973 43 1 3.1576 -2.0907 2.5025 44 1 4.3692 -3.7715 4.4220 45 1 3.0795 -5.5325 6.9445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753981079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:50 Heat of formation + Delta-G solvation = -92.259733 kcal Electronic energy + Delta-G solvation = -27839.307271 eV Core-core repulsion = 23857.078995 eV Total energy + Delta-G solvation = -3982.228276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21340 -40.48003 -40.25990 -38.36361 -37.84488 -36.09676 -33.81638 -33.13713 -31.99797 -31.50380 -29.42357 -28.91756 -27.80110 -26.08598 -25.61266 -23.57396 -23.36370 -22.38488 -21.61702 -20.05088 -19.30948 -18.82019 -18.57408 -17.64683 -17.58700 -17.09820 -16.69533 -16.67184 -16.18114 -15.82038 -15.71884 -15.46345 -15.23302 -15.09696 -14.79181 -14.72644 -14.33736 -14.23213 -13.83201 -13.54895 -13.11905 -12.91911 -12.91436 -12.80746 -12.64054 -12.49085 -12.40561 -12.23540 -12.15593 -12.00439 -11.95486 -11.65253 -11.41414 -10.96869 -10.69977 -10.13147 -10.08598 -9.72375 -9.02141 -7.96366 -5.25840 -0.17024 0.16145 1.46360 1.47827 1.48759 1.57820 1.60735 2.14194 2.41677 2.54808 2.57236 3.29206 3.37164 3.52431 3.62900 3.79535 3.91440 4.05615 4.12167 4.18564 4.27334 4.34353 4.38519 4.39435 4.43899 4.54711 4.56814 4.63445 4.70795 4.75617 4.76047 4.83708 4.88377 4.98672 5.10815 5.20334 5.25048 5.31558 5.47495 5.52811 6.04163 6.09760 6.25878 6.45749 6.69694 7.14575 7.32297 8.06359 8.32078 9.27262 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003435 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.226960 B = 8148.729964 C = 9500.295910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.223 3.777 4 C -0.289 4.289 5 C 0.195 3.805 6 N -0.567 5.567 7 C 0.379 3.621 8 O -0.317 6.317 9 C 0.036 3.964 10 C -0.272 4.272 11 C 0.591 3.409 12 O -0.578 6.578 13 N -0.700 5.700 14 C 0.150 3.850 15 H 0.068 0.932 16 C -0.150 4.150 17 C -0.117 4.117 18 C 0.157 3.843 19 N -0.745 5.745 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.974 3.026 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.290 1.290 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.183 0.817 32 H 0.212 0.788 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.406 0.594 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.019 0.981 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 22.219 -12.992 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.168 3.832 4 C -0.310 4.310 5 C 0.041 3.959 6 N -0.295 5.295 7 C 0.199 3.801 8 O -0.223 6.223 9 C -0.058 4.058 10 C -0.279 4.279 11 C 0.377 3.623 12 O -0.457 6.457 13 N -0.350 5.350 14 C 0.046 3.954 15 H 0.086 0.914 16 C -0.208 4.208 17 C -0.155 4.155 18 C 0.031 3.969 19 N -0.388 5.388 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.266 4.266 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.191 1.191 26 H -0.220 1.220 27 H -0.217 1.217 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.200 0.800 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.242 0.758 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.037 0.963 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.622 22.170 -13.782 26.112 hybrid contribution -1.194 -1.139 0.914 1.886 sum -1.816 21.031 -12.869 24.722 Atomic orbital electron populations 1.23564 0.74539 1.06021 1.03732 1.86087 1.25085 1.26328 1.86252 1.19167 0.89594 0.86411 0.88045 1.22377 1.03446 0.91099 1.14051 1.23084 0.87782 0.98910 0.86161 1.67540 1.09131 1.29264 1.23571 1.19392 0.84906 0.87490 0.88283 1.86215 1.15466 1.34103 1.86558 1.23180 0.99797 0.79695 1.03082 1.18995 0.92279 0.93092 1.23533 1.17730 0.78212 0.82708 0.83625 1.90731 1.57964 1.64320 1.32723 1.46033 1.52227 1.28531 1.08202 1.20902 0.91349 0.85328 0.97848 0.91372 1.22061 0.94049 1.02682 1.02035 1.21890 0.96569 1.00390 0.96695 1.20698 0.95288 0.93418 0.87515 1.42562 1.11271 1.64659 1.20277 1.19629 0.90157 1.26219 1.01865 0.91098 1.25569 1.01372 1.02410 0.97225 1.69816 1.32555 1.48108 1.11392 0.85072 0.79495 0.77460 0.77726 1.19107 1.21975 1.21652 0.90064 0.89660 0.87242 0.79991 0.77167 0.91703 0.91295 0.86290 0.75833 0.93367 0.91152 0.90077 0.90410 0.89659 0.97571 0.96339 0.79221 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.84 113.37 1.12 1.35 16 2 O -0.33 -8.73 10.03 -88.01 -0.88 -9.61 16 3 C 0.22 5.56 6.74 23.09 0.16 5.71 16 4 C -0.29 -4.56 9.09 22.42 0.20 -4.36 16 5 C 0.19 2.81 11.15 84.58 0.94 3.75 16 6 N -0.57 -11.79 9.20 -308.27 -2.84 -14.63 16 7 C 0.38 9.89 7.51 85.14 0.64 10.53 16 8 O -0.32 -8.07 9.93 -87.19 -0.87 -8.94 16 9 C 0.04 0.59 10.38 113.37 1.18 1.77 16 10 C -0.27 -8.00 5.66 -19.83 -0.11 -8.11 16 11 C 0.59 20.37 6.38 86.61 0.55 20.92 16 12 O -0.58 -24.03 16.77 -4.13 -0.07 -24.09 16 13 N -0.70 -21.53 4.53 -446.00 -2.02 -23.55 16 14 C 0.15 4.59 2.57 44.99 0.12 4.71 16 15 H 0.07 2.38 7.58 -2.39 -0.02 2.37 16 16 C -0.15 -3.84 9.48 71.98 0.68 -3.15 16 17 C -0.12 -3.83 4.87 30.59 0.15 -3.68 16 18 C 0.16 6.64 6.15 86.38 0.53 7.17 16 19 N -0.74 -38.88 5.60 -343.45 -1.92 -40.80 16 20 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 23 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 24 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 H 0.08 0.97 7.71 -2.39 -0.02 0.95 16 29 H 0.08 0.89 7.71 -2.39 -0.02 0.87 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.18 1.49 6.45 -2.91 -0.02 1.47 16 32 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 35 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.41 11.44 8.59 -92.71 -0.80 10.64 16 37 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.02 0.79 7.75 -2.39 -0.02 0.78 16 44 H 0.38 20.47 7.67 -92.71 -0.71 19.76 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -79.95 384.30 0.68 -79.27 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.49 Total: 33.71 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 7.46 Total: 19.54 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -6.50 Total: -138.10 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.82 Total: -42.64 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.95 0.68 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753981079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.990 kcal (2) G-P(sol) polarization free energy of solvation -79.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds