Wall clock time and date at job start Tue Mar 31 2020 14:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35502 * 117.00230 * 2 1 4 4 C 1.39215 * 120.90160 * 0.02562 * 3 2 1 5 5 C 1.37896 * 119.39090 * 179.72703 * 4 3 2 6 6 N 1.32083 * 121.28998 * 0.02562 * 5 4 3 7 7 C 1.32183 * 121.97871 * 359.97438 * 6 5 4 8 8 O 1.35428 * 119.77378 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00308 * 0.02562 * 8 7 6 10 10 C 1.40293 * 120.44797 * 0.02562 * 7 6 5 11 11 C 1.47225 * 120.65570 * 180.02562 * 10 7 6 12 12 O 1.21624 * 120.00251 * 269.97910 * 11 10 7 13 13 N 1.34776 * 120.00220 * 89.97279 * 11 10 7 14 14 C 1.46494 * 120.00475 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47136 * 35.00262 * 14 13 11 16 16 C 1.52997 * 109.47295 * 275.00695 * 14 13 11 17 17 C 1.52997 * 109.47510 * 155.00078 * 14 13 11 18 18 C 1.53002 * 109.47101 * 295.00441 * 17 14 13 19 19 N 1.46495 * 109.47150 * 179.97438 * 18 17 14 20 20 C 1.36936 * 120.00065 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99954 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00104 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00043 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99964 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46738 * 90.00572 * 24 22 20 26 26 H 1.48497 * 109.47177 * 210.00473 * 24 22 20 27 27 H 1.48497 * 109.46960 * 330.00624 * 24 22 20 28 28 H 1.09008 * 109.46809 * 300.00527 * 1 2 3 29 29 H 1.08995 * 109.46730 * 59.99608 * 1 2 3 30 30 H 1.08993 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.30406 * 359.74543 * 4 3 2 32 32 H 1.08001 * 119.35592 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47291 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46982 * 299.99519 * 9 8 7 35 35 H 1.08997 * 109.47311 * 59.99370 * 9 8 7 36 36 H 0.97001 * 119.99580 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.47371 * 59.99347 * 16 14 13 38 38 H 1.08998 * 109.47513 * 180.02562 * 16 14 13 39 39 H 1.09002 * 109.46935 * 299.99397 * 16 14 13 40 40 H 1.09000 * 109.46769 * 55.00041 * 17 14 13 41 41 H 1.09001 * 109.47301 * 175.00181 * 17 14 13 42 42 H 1.09007 * 109.46808 * 299.99771 * 18 17 14 43 43 H 1.08991 * 109.47278 * 59.99693 * 18 17 14 44 44 H 0.97006 * 120.00222 * 359.97438 * 19 18 17 45 45 H 0.97006 * 119.99829 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 1.3046 2.3867 0.0005 5 6 1.9628 3.5984 0.0062 6 7 3.2821 3.6624 0.0107 7 6 4.0356 2.5764 0.0105 8 8 5.3848 2.6940 0.0157 9 6 5.9206 4.0187 0.0219 10 6 3.4473 1.3028 0.0048 11 6 4.2822 0.0902 0.0051 12 8 4.6310 -0.4083 -1.0481 13 7 4.6601 -0.4676 1.1723 14 6 5.4913 -1.6739 1.1727 15 1 6.1861 -1.6366 0.3336 16 6 4.5980 -2.9089 1.0404 17 6 6.2776 -1.7512 2.4828 18 6 7.2614 -0.5816 2.5570 19 7 8.0139 -0.6553 3.8117 20 6 8.9593 0.2925 4.0997 21 1 9.1505 1.0941 3.4017 22 6 9.6727 0.2225 5.2885 23 7 10.5810 1.1338 5.5655 24 14 9.3425 -1.1644 6.4956 25 1 10.2303 -2.3134 6.1842 26 1 9.6106 -0.6920 7.8777 27 1 7.9243 -1.5902 6.3844 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2251 2.3529 -0.0032 32 1 1.3884 4.5130 0.0071 33 1 7.0095 3.9702 0.0261 34 1 5.5837 4.5510 -0.8677 35 1 5.5772 4.5454 0.9122 36 1 4.3816 -0.0702 2.0123 37 1 4.0378 -2.8539 0.1070 38 1 5.2164 -3.8065 1.0411 39 1 3.9032 -2.9463 1.8794 40 1 5.5871 -1.6990 3.3246 41 1 6.8275 -2.6915 2.5217 42 1 7.9519 -0.6338 1.7151 43 1 6.7116 0.3586 2.5181 44 1 7.8424 -1.3755 4.4386 45 1 11.0793 1.0850 6.3964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753981080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:54 Heat of formation + Delta-G solvation = -58.712907 kcal Electronic energy + Delta-G solvation = -27882.211594 eV Core-core repulsion = 23901.438017 eV Total energy + Delta-G solvation = -3980.773576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33754 -39.43981 -39.29887 -37.51478 -36.47608 -34.40640 -32.58226 -31.63210 -31.10065 -30.43014 -28.28741 -28.19511 -27.03358 -24.97894 -23.79844 -22.76262 -21.63246 -21.07648 -20.41993 -19.21317 -17.99684 -17.82605 -17.35882 -16.78757 -16.56632 -16.07388 -15.88251 -15.45920 -15.02275 -14.60293 -14.37106 -14.15359 -14.01393 -13.83043 -13.53350 -13.44558 -13.23888 -13.20583 -12.57755 -12.38660 -12.07464 -12.03481 -11.96131 -11.78377 -11.45446 -11.30244 -11.18854 -10.83007 -10.67843 -10.44665 -10.37552 -10.11232 -9.65996 -9.55795 -9.27636 -8.93758 -8.85691 -8.82327 -7.18966 -5.73446 -3.08491 0.66139 0.98522 2.35935 2.68137 3.16386 3.24213 3.38958 3.41826 3.43682 3.46735 4.06241 4.27977 4.55786 4.61863 4.67659 4.69177 4.70383 4.86955 5.02435 5.13610 5.21671 5.26517 5.30005 5.35299 5.38336 5.55047 5.55535 5.61807 5.69688 5.72463 5.78228 5.87456 6.00177 6.04314 6.23426 6.32165 6.60979 6.70854 6.80945 6.84685 7.00247 7.52840 7.63734 8.03937 8.33641 8.45686 9.25188 9.97542 10.17828 11.45193 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.003481 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.510840 B = 8041.221200 C = 9202.529158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.299 6.299 3 C 0.233 3.767 4 C -0.304 4.304 5 C 0.191 3.809 6 N -0.560 5.560 7 C 0.392 3.608 8 O -0.289 6.289 9 C 0.040 3.960 10 C -0.238 4.238 11 C 0.592 3.408 12 O -0.533 6.533 13 N -0.707 5.707 14 C 0.146 3.854 15 H 0.091 0.909 16 C -0.159 4.159 17 C -0.138 4.138 18 C 0.158 3.842 19 N -0.758 5.758 20 C -0.241 4.241 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.401 0.599 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.603 1.024 -11.980 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.208 6.208 3 C 0.178 3.822 4 C -0.326 4.326 5 C 0.036 3.964 6 N -0.287 5.287 7 C 0.213 3.787 8 O -0.194 6.194 9 C -0.055 4.055 10 C -0.245 4.245 11 C 0.376 3.624 12 O -0.409 6.409 13 N -0.358 5.358 14 C 0.041 3.959 15 H 0.109 0.891 16 C -0.218 4.218 17 C -0.177 4.177 18 C 0.031 3.969 19 N -0.403 5.403 20 C -0.371 4.371 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.164 0.836 32 H 0.184 0.816 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.235 0.765 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.192 0.808 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.465 1.214 -12.757 26.736 hybrid contribution -1.003 -1.035 1.421 2.024 sum -24.468 0.179 -11.335 26.966 Atomic orbital electron populations 1.23229 0.77013 1.04770 1.01936 1.86076 1.22383 1.25725 1.86658 1.18821 0.89808 0.85132 0.88416 1.21950 1.01689 0.92479 1.16438 1.22297 0.88534 0.97315 0.88286 1.67475 1.07907 1.30384 1.22953 1.19421 0.84874 0.87376 0.87069 1.86302 1.14849 1.32362 1.85906 1.23014 0.99283 0.80624 1.02534 1.18933 0.91287 0.93668 1.20620 1.17338 0.78838 0.82102 0.84117 1.90777 1.55555 1.63205 1.31357 1.46023 1.52709 1.28847 1.08172 1.20967 0.91965 0.83552 0.99381 0.89105 1.22149 1.00133 0.97430 1.02068 1.22112 0.98603 1.01004 0.95956 1.20620 0.92092 0.94961 0.89259 1.42728 1.45806 1.32151 1.19638 1.19077 1.10611 1.04280 1.03138 0.89275 1.24676 0.98509 0.98257 0.97878 1.69706 1.27265 1.35810 1.25622 0.86526 0.77707 0.82751 0.81410 1.21093 1.21789 1.20402 0.91906 0.91977 0.87559 0.83601 0.81648 0.87768 0.92074 0.91682 0.76506 0.92217 0.91625 0.92630 0.91505 0.90275 0.95449 0.95386 0.80775 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.13 16 2 O -0.30 -3.15 10.03 -18.20 -0.18 -3.33 16 3 C 0.23 2.66 6.74 -38.32 -0.26 2.40 16 4 C -0.30 -2.53 9.09 -39.34 -0.36 -2.89 16 5 C 0.19 1.68 11.15 -17.57 -0.20 1.49 16 6 N -0.56 -6.78 9.20 -13.06 -0.12 -6.90 16 7 C 0.39 5.60 7.51 -16.63 -0.12 5.47 16 8 O -0.29 -4.43 9.93 -17.98 -0.18 -4.60 16 9 C 0.04 0.47 10.38 101.05 1.05 1.52 16 10 C -0.24 -3.40 5.66 -104.57 -0.59 -3.99 16 11 C 0.59 9.59 6.38 -12.61 -0.08 9.51 16 12 O -0.53 -10.35 16.77 5.26 0.09 -10.26 16 13 N -0.71 -10.21 4.53 -54.95 -0.25 -10.45 16 14 C 0.15 2.09 2.57 -67.94 -0.17 1.91 16 15 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 16 C -0.16 -1.94 9.48 37.16 0.35 -1.58 16 17 C -0.14 -2.12 4.87 -26.73 -0.13 -2.25 16 18 C 0.16 3.16 6.15 -4.04 -0.02 3.14 16 19 N -0.76 -18.47 5.41 -59.91 -0.32 -18.80 16 20 C -0.24 -7.01 10.47 -15.06 -0.16 -7.16 16 21 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -29.82 13.97 55.49 0.78 -29.04 16 24 Si 0.89 22.36 27.74 -169.99 -4.71 17.65 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 28 H 0.06 0.24 7.71 -51.92 -0.40 -0.16 16 29 H 0.06 0.25 7.70 -51.93 -0.40 -0.15 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 0.71 6.45 -52.49 -0.34 0.37 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.40 5.29 8.59 -40.82 -0.35 4.94 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.03 0.58 7.75 -51.93 -0.40 0.18 16 44 H 0.36 8.45 5.53 -40.82 -0.23 8.23 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -37.34 381.18 -5.71 -43.05 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.75 Total: 8.28 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 0.20 Total: 8.67 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 0.08 Total: -65.19 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.27 Total: -18.19 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.34 -5.71 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753981080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.664 kcal (2) G-P(sol) polarization free energy of solvation -37.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds