Wall clock time and date at job start Tue Mar 31 2020 14:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46510 * 109.46900 * 2 1 4 4 C 1.46500 * 119.99968 * 92.86842 * 3 2 1 5 5 C 1.52995 * 109.47437 * 89.99822 * 4 3 2 6 6 N 1.46500 * 109.47437 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00233 * 179.72470 * 6 5 4 8 8 H 1.08003 * 120.00042 * 0.27457 * 7 6 5 9 9 C 1.38810 * 120.00066 * 180.27715 * 7 6 5 10 10 N 1.31620 * 120.00107 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00116 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47371 * 59.99892 * 11 9 7 13 13 H 1.48498 * 109.47366 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47015 * 299.99649 * 11 9 7 15 15 C 1.34769 * 119.99981 * 272.86259 * 3 2 1 16 16 O 1.21614 * 120.00256 * 185.26902 * 15 3 2 17 17 C 1.47420 * 120.00137 * 5.27163 * 15 3 2 18 18 N 1.36072 * 126.44896 * 5.76714 * 17 15 3 19 19 C 1.29929 * 108.47837 * 180.02562 * 18 17 15 20 20 O 1.34049 * 109.24655 * 0.02562 * 19 18 17 21 21 C 1.34262 * 108.22574 * 359.72758 * 20 19 18 22 22 C 1.50695 * 126.52950 * 180.26136 * 21 20 19 23 23 H 1.09003 * 109.87285 * 164.48958 * 22 21 20 24 24 C 1.54096 * 109.88201 * 285.50059 * 22 21 20 25 25 C 1.54815 * 104.19015 * 121.45117 * 24 22 21 26 26 C 1.54998 * 102.09013 * 20.88397 * 25 24 22 27 27 O 1.43746 * 109.87756 * 43.48898 * 22 21 20 28 28 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47651 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.46776 * 60.00210 * 1 2 3 31 31 H 1.09001 * 109.47761 * 240.00441 * 2 1 3 32 32 H 1.09001 * 109.47675 * 119.99655 * 2 1 3 33 33 H 1.09003 * 109.46907 * 329.99953 * 4 3 2 34 34 H 1.08998 * 109.46888 * 210.00160 * 4 3 2 35 35 H 1.08997 * 109.47451 * 59.99642 * 5 4 3 36 36 H 1.09007 * 109.46793 * 299.99963 * 5 4 3 37 37 H 0.97007 * 119.99417 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00221 * 179.97438 * 10 9 7 39 39 H 1.08000 * 125.38281 * 180.02562 * 19 18 17 40 40 H 1.09005 * 110.49097 * 240.12941 * 24 22 21 41 41 H 1.09004 * 110.48982 * 2.77561 * 24 22 21 42 42 H 1.08997 * 110.90450 * 139.07719 * 25 24 22 43 43 H 1.09000 * 110.90592 * 262.64755 * 25 24 22 44 44 H 1.08997 * 110.61910 * 81.47682 * 26 25 24 45 45 H 1.09007 * 110.61615 * 204.32167 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3223 2.0508 1.2671 5 6 3.7864 1.8037 1.6362 6 7 4.0905 2.4736 2.9030 7 6 5.3478 2.3871 3.4387 8 1 6.1164 1.8287 2.9251 9 6 5.6344 3.0171 4.6419 10 7 4.6978 3.6981 5.2677 11 14 7.3496 2.8998 5.3724 12 1 8.3331 3.4777 4.4217 13 1 7.3958 3.6537 6.6509 14 1 7.6835 1.4750 5.6250 15 6 2.1879 2.0361 -1.1657 16 8 2.6829 3.1469 -1.1728 17 6 1.7734 1.4058 -2.4322 18 7 1.1110 0.2251 -2.5688 19 6 0.9233 0.0023 -3.8350 20 8 1.4484 1.0116 -4.5439 21 6 1.9771 1.8975 -3.6848 22 6 2.6680 3.1889 -4.0399 23 1 2.7464 3.8223 -3.1563 24 6 4.0730 2.8948 -4.6002 25 6 4.0571 3.5244 -6.0144 26 6 2.8979 4.5471 -5.9014 27 8 1.9295 3.8719 -5.0667 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6779 1.6537 2.0515 34 1 2.1497 3.1219 1.1627 35 1 4.4308 2.2006 0.8518 36 1 3.9589 0.7324 1.7406 37 1 3.4000 2.9749 3.3645 38 1 4.8980 4.1380 6.1087 39 1 0.4231 -0.8599 -4.2509 40 1 4.8368 3.3658 -3.9814 41 1 4.2413 1.8196 -4.6631 42 1 5.0004 4.0276 -6.2267 43 1 3.8403 2.7720 -6.7727 44 1 3.2407 5.4645 -5.4230 45 1 2.4782 4.7617 -6.8843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754061848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:46 Heat of formation + Delta-G solvation = -27.008134 kcal Electronic energy + Delta-G solvation = -27957.579312 eV Core-core repulsion = 23978.180558 eV Total energy + Delta-G solvation = -3979.398754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.69768 -39.73569 -39.54777 -36.22726 -35.19975 -34.30715 -32.62884 -31.86662 -31.58860 -30.17417 -28.69821 -27.47018 -24.65877 -23.78137 -23.53109 -22.85521 -22.16767 -21.65587 -21.05657 -19.56238 -17.74712 -17.30072 -17.11606 -16.76689 -16.53785 -16.20991 -15.70676 -15.49711 -15.00250 -14.42623 -14.21866 -14.02624 -13.97403 -13.81152 -13.53613 -13.33362 -13.21164 -12.87171 -12.42582 -12.16046 -12.12374 -11.84875 -11.71894 -11.63110 -11.23768 -11.14490 -10.95182 -10.90326 -10.86621 -10.66010 -10.53933 -10.23949 -10.10214 -9.85172 -9.67451 -9.19608 -8.82814 -8.44530 -6.88955 -5.72143 -3.01189 0.85711 1.87263 2.29779 3.03769 3.23021 3.47568 3.51391 3.51823 3.52939 3.80105 4.17907 4.19824 4.51903 4.56544 4.64625 4.65425 4.93494 4.98181 5.17265 5.27509 5.28181 5.34959 5.43842 5.46519 5.52605 5.55548 5.61826 5.63323 5.67811 5.71998 5.78171 5.86747 5.92191 6.07081 6.11939 6.23296 6.42562 6.45192 6.64324 6.78689 6.96480 7.21421 7.54448 7.73474 8.21287 8.46444 9.57160 10.13724 10.49075 11.50785 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003116 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.517774 B = 8984.079141 C =10408.047697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.106 3.894 3 N -0.587 5.587 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.595 3.405 16 O -0.529 6.529 17 C -0.054 4.054 18 N -0.453 5.453 19 C 0.169 3.831 20 O -0.188 6.188 21 C 0.041 3.959 22 C 0.149 3.851 23 H 0.137 0.863 24 C -0.148 4.148 25 C -0.153 4.153 26 C 0.045 3.955 27 O -0.368 6.368 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 -6.901 -25.060 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.016 4.016 3 N -0.318 5.318 4 C -0.013 4.013 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.382 3.618 16 O -0.406 6.406 17 C -0.175 4.175 18 N -0.182 5.182 19 C -0.059 4.059 20 O -0.074 6.074 21 C -0.016 4.016 22 C 0.091 3.909 23 H 0.154 0.846 24 C -0.185 4.185 25 C -0.191 4.191 26 C -0.032 4.032 27 O -0.287 6.287 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.270 0.730 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.672 -6.752 -24.558 26.905 hybrid contribution 0.928 0.124 0.095 0.941 sum -7.743 -6.628 -24.463 26.501 Atomic orbital electron populations 1.22046 0.95759 1.01746 1.01730 1.21787 0.94835 0.81509 1.03517 1.47735 1.63770 1.14668 1.05672 1.21767 0.97925 0.98583 0.83072 1.20905 0.92232 0.95673 0.89701 1.42199 1.11676 1.61918 1.21687 1.19163 0.88310 1.26852 1.02556 0.91275 1.24739 0.97841 1.00508 0.97889 1.69652 1.32250 1.38342 1.18023 0.86242 0.84085 0.77381 0.78323 1.21258 1.21659 1.21285 1.16773 0.78555 0.84610 0.81879 1.90781 1.44517 1.19354 1.85978 1.21532 1.06549 0.94980 0.94396 1.71077 1.14961 1.14342 1.17866 1.28185 0.98793 0.93190 0.85716 1.84399 1.56192 1.27709 1.39098 1.23631 0.97906 0.92616 0.87427 1.21790 0.88692 0.85830 0.94585 0.84588 1.23018 0.96022 1.02798 0.96702 1.23153 0.99899 0.99090 0.96970 1.23667 0.88800 0.95294 0.95396 1.88990 1.30579 1.66835 1.42300 0.92023 0.93301 0.92030 0.88652 0.90643 0.90201 0.89678 0.95795 0.96405 0.78255 0.93453 0.73049 0.88811 0.90252 0.89515 0.90334 0.91318 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.66 37.16 0.36 -1.40 16 2 C 0.11 1.37 5.67 -4.04 -0.02 1.34 16 3 N -0.59 -9.32 2.48 -174.95 -0.43 -9.76 16 4 C 0.11 1.97 5.47 -4.04 -0.02 1.94 16 5 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 6 N -0.73 -19.41 5.60 -59.91 -0.34 -19.74 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 11 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 C 0.60 9.91 7.64 -12.53 -0.10 9.82 16 16 O -0.53 -10.13 14.20 5.27 0.07 -10.06 16 17 C -0.05 -0.76 6.47 -83.02 -0.54 -1.30 16 18 N -0.45 -5.14 6.24 -11.48 -0.07 -5.21 16 19 C 0.17 1.41 13.19 51.96 0.69 2.09 16 20 O -0.19 -2.03 10.73 6.47 0.07 -1.96 16 21 C 0.04 0.53 6.12 -35.08 -0.21 0.31 16 22 C 0.15 1.83 3.70 -27.31 -0.10 1.73 16 23 H 0.14 1.94 5.79 -51.93 -0.30 1.64 16 24 C -0.15 -1.43 6.63 -25.20 -0.17 -1.59 16 25 C -0.15 -1.13 7.16 -24.72 -0.18 -1.30 16 26 C 0.04 0.37 7.72 38.21 0.29 0.66 16 27 O -0.37 -4.48 11.19 -35.26 -0.39 -4.88 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 31 H 0.10 1.19 5.69 -51.93 -0.30 0.89 16 32 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.38 10.57 7.67 -40.82 -0.31 10.25 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.25 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.75 7.69 -51.93 -0.40 0.36 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -35.26 370.36 -6.73 -41.99 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.65 Total: 6.44 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.27 Total: 7.85 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.12 Total: -62.85 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.25 Total: -16.89 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.26 -6.73 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754061848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.984 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds