Wall clock time and date at job start Tue Mar 31 2020 14:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47423 * 2 1 4 4 C 1.46494 * 119.99861 * 92.83654 * 3 2 1 5 5 C 1.52999 * 109.47631 * 90.00051 * 4 3 2 6 6 N 1.46497 * 109.47380 * 179.97438 * 5 4 3 7 7 C 1.36944 * 120.00005 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99492 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99185 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00483 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47113 * 89.99598 * 11 9 7 13 13 H 1.48503 * 109.47478 * 209.99800 * 11 9 7 14 14 H 1.48501 * 109.47171 * 330.00075 * 11 9 7 15 15 C 1.34780 * 120.00007 * 272.83680 * 3 2 1 16 16 O 1.21613 * 119.99909 * 185.26745 * 15 3 2 17 17 C 1.47418 * 119.99937 * 5.26712 * 15 3 2 18 18 N 1.36071 * 126.45107 * 5.84152 * 17 15 3 19 19 C 1.29933 * 108.47969 * 179.97438 * 18 17 15 20 20 O 1.34053 * 109.24153 * 359.97438 * 19 18 17 21 21 C 1.34261 * 108.22858 * 359.77133 * 20 19 18 22 22 C 1.50693 * 126.52724 * 180.23019 * 21 20 19 23 23 H 1.09000 * 109.82219 * 195.86556 * 22 21 20 24 24 C 1.54381 * 109.83360 * 74.97316 * 22 21 20 25 25 C 1.55449 * 102.18508 * 219.18363 * 24 22 21 26 26 C 1.54946 * 100.99013 * 34.04161 * 25 24 22 27 27 O 1.43245 * 109.83055 * 316.74690 * 22 21 20 28 28 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46904 * 299.99729 * 1 2 3 30 30 H 1.08999 * 109.47311 * 59.99683 * 1 2 3 31 31 H 1.09000 * 109.47485 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.47588 * 119.99979 * 2 1 3 33 33 H 1.09003 * 109.47706 * 329.99805 * 4 3 2 34 34 H 1.09010 * 109.47262 * 210.00061 * 4 3 2 35 35 H 1.09005 * 109.46865 * 59.99954 * 5 4 3 36 36 H 1.08999 * 109.47156 * 299.99999 * 5 4 3 37 37 H 0.97000 * 120.00246 * 0.02562 * 6 5 4 38 38 H 0.97005 * 119.99161 * 180.02562 * 10 9 7 39 39 H 1.07995 * 125.37465 * 180.02562 * 19 18 17 40 40 H 1.08996 * 110.84399 * 337.32208 * 24 22 21 41 41 H 1.08998 * 110.84787 * 100.94219 * 24 22 21 42 42 H 1.09001 * 111.05719 * 276.12080 * 25 24 22 43 43 H 1.09006 * 111.17951 * 152.01043 * 25 24 22 44 44 H 1.09005 * 110.30361 * 204.68954 * 26 25 24 45 45 H 1.08998 * 110.31262 * 82.51834 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3217 2.0508 1.2671 5 6 3.7856 1.8037 1.6370 6 7 4.0891 2.4738 2.9039 7 6 5.3476 2.3916 3.4377 8 1 6.1163 1.8331 2.9245 9 6 5.6352 3.0271 4.6378 10 7 6.8449 2.9484 5.1505 11 14 4.3057 3.9937 5.5250 12 1 3.5815 3.0958 6.4602 13 1 4.9277 5.1055 6.2881 14 1 3.3508 4.5482 4.5321 15 6 2.1886 2.0358 -1.1658 16 8 2.6837 3.1466 -1.1728 17 6 1.7746 1.4053 -2.4324 18 7 1.1110 0.2253 -2.5691 19 6 0.9233 0.0025 -3.8353 20 8 1.4487 1.0118 -4.5440 21 6 1.9784 1.8972 -3.6849 22 6 2.6704 3.1879 -4.0399 23 1 3.2343 3.5532 -3.1817 24 6 1.6262 4.2416 -4.4676 25 6 2.3446 4.9556 -5.6469 26 6 3.1388 3.7777 -6.2656 27 8 3.5538 2.9770 -5.1476 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6770 1.6541 2.0514 34 1 2.1493 3.1221 1.1624 35 1 4.4305 2.2006 0.8528 36 1 3.9581 0.7325 1.7418 37 1 3.3985 2.9752 3.3650 38 1 7.0458 3.3922 5.9894 39 1 0.4224 -0.8592 -4.2510 40 1 0.7078 3.7622 -4.8062 41 1 1.4241 4.9395 -3.6551 42 1 3.0155 5.7338 -5.2832 43 1 1.6254 5.3613 -6.3585 44 1 4.0081 4.1508 -6.8072 45 1 2.4986 3.1972 -6.9298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754061849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:49 Heat of formation + Delta-G solvation = -23.787785 kcal Electronic energy + Delta-G solvation = -28013.375406 eV Core-core repulsion = 24034.116297 eV Total energy + Delta-G solvation = -3979.259109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.73231 -39.80521 -39.63499 -36.32547 -35.28727 -34.44437 -32.67068 -31.92083 -31.67380 -30.41046 -28.89480 -27.77385 -24.77476 -23.72101 -23.52361 -22.82453 -22.15903 -21.59608 -21.11253 -19.64724 -17.84207 -17.48167 -17.15992 -17.00291 -16.77451 -16.35278 -15.98260 -15.38543 -14.99246 -14.38827 -14.34606 -14.02024 -13.92731 -13.78867 -13.59996 -13.56087 -13.42137 -12.73318 -12.46400 -12.22233 -12.15900 -11.94181 -11.83040 -11.67782 -11.50053 -11.32423 -11.09968 -11.07551 -10.94869 -10.72710 -10.59188 -10.16383 -10.13115 -9.94407 -9.55405 -9.22558 -8.84943 -8.52928 -7.19519 -5.71873 -3.07829 0.82878 1.82929 2.26849 2.95009 3.17413 3.41710 3.44442 3.48986 3.49731 3.75292 4.05586 4.10092 4.45164 4.49847 4.63797 4.70999 4.81986 4.94961 5.09891 5.22433 5.25251 5.31912 5.35336 5.36652 5.42135 5.47332 5.54523 5.56727 5.59882 5.60588 5.72398 5.78394 5.81991 5.86762 6.01190 6.04922 6.35554 6.53480 6.54970 6.68549 6.87288 7.16807 7.46095 8.03432 8.14367 8.46526 9.25184 9.97246 10.16756 11.46596 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003190 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.311972 B = 8776.610933 C = 9976.238156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.105 3.895 3 N -0.588 5.588 4 C 0.106 3.894 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.241 4.241 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.596 3.404 16 O -0.529 6.529 17 C -0.057 4.057 18 N -0.453 5.453 19 C 0.169 3.831 20 O -0.191 6.191 21 C 0.031 3.969 22 C 0.154 3.846 23 H 0.146 0.854 24 C -0.145 4.145 25 C -0.155 4.155 26 C 0.046 3.954 27 O -0.367 6.367 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 -3.511 -25.164 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 N -0.319 5.319 4 C -0.017 4.017 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.371 4.371 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.383 3.617 16 O -0.406 6.406 17 C -0.177 4.177 18 N -0.183 5.183 19 C -0.059 4.059 20 O -0.077 6.077 21 C -0.026 4.026 22 C 0.096 3.904 23 H 0.163 0.837 24 C -0.182 4.182 25 C -0.192 4.192 26 C -0.030 4.030 27 O -0.286 6.286 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.269 0.731 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.152 -3.528 -24.650 30.236 hybrid contribution -1.009 0.806 0.195 1.306 sum -18.161 -2.723 -24.455 30.582 Atomic orbital electron populations 1.22041 0.95762 1.01794 1.01596 1.21802 0.94783 0.81417 1.03714 1.47685 1.63957 1.14764 1.05519 1.21779 0.97920 0.98535 0.83428 1.20900 0.92255 0.96118 0.88929 1.42559 1.11300 1.62831 1.23257 1.19046 0.87223 1.27546 1.03303 0.89233 1.24667 0.96314 1.00474 0.97749 1.69711 1.18976 1.48503 1.21110 0.86524 0.81911 0.80186 0.79815 1.21073 1.21687 1.20238 1.16777 0.78401 0.84637 0.81877 1.90788 1.44409 1.19460 1.85975 1.21506 1.07090 0.94548 0.94518 1.71059 1.15200 1.14107 1.17900 1.28183 0.98848 0.93194 0.85693 1.84388 1.56027 1.28043 1.39200 1.24185 0.97448 0.93392 0.87594 1.21823 0.90280 0.85405 0.92853 0.83706 1.23197 0.98095 0.97459 0.99484 1.23336 0.99877 0.98593 0.97397 1.23487 0.99328 0.90928 0.89268 1.88560 1.50850 1.67065 1.22088 0.91963 0.93429 0.92043 0.88514 0.90571 0.90278 0.89776 0.94910 0.95460 0.80693 0.93077 0.73079 0.90363 0.88427 0.89540 0.89409 0.89022 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.66 37.16 0.36 -1.26 16 2 C 0.11 1.30 5.67 -4.04 -0.02 1.27 16 3 N -0.59 -8.91 2.48 -174.95 -0.43 -9.34 16 4 C 0.11 1.79 5.47 -4.04 -0.02 1.77 16 5 C 0.15 3.08 6.58 -4.04 -0.03 3.05 16 6 N -0.75 -18.88 5.41 -59.91 -0.32 -19.20 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -30.15 13.97 55.49 0.78 -29.38 16 11 Si 0.89 22.62 27.73 -169.99 -4.71 17.90 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 15 C 0.60 9.54 7.64 -12.52 -0.10 9.44 16 16 O -0.53 -9.70 14.25 5.27 0.08 -9.63 16 17 C -0.06 -0.76 6.48 -83.02 -0.54 -1.30 16 18 N -0.45 -4.95 6.24 -11.48 -0.07 -5.02 16 19 C 0.17 1.34 13.19 51.96 0.69 2.02 16 20 O -0.19 -1.95 10.73 6.43 0.07 -1.88 16 21 C 0.03 0.38 6.19 -35.08 -0.22 0.16 16 22 C 0.15 1.83 3.73 -27.16 -0.10 1.73 16 23 H 0.15 2.03 5.94 -51.93 -0.31 1.72 16 24 C -0.14 -1.26 6.55 -24.71 -0.16 -1.43 16 25 C -0.15 -1.05 7.16 -24.40 -0.17 -1.23 16 26 C 0.05 0.37 7.78 38.18 0.30 0.67 16 27 O -0.37 -4.44 11.00 -35.30 -0.39 -4.83 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 6.55 -51.93 -0.34 0.35 16 31 H 0.10 1.19 5.69 -51.93 -0.30 0.89 16 32 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.08 1.50 7.50 -51.92 -0.39 1.11 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.36 8.66 5.53 -40.82 -0.23 8.43 16 38 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 39 H 0.25 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -36.28 367.49 -6.37 -42.65 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.62 Total: 5.56 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.27 Total: 7.62 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.05 Total: -62.93 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.24 Total: -16.35 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.28 -6.37 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754061849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.865 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds