Wall clock time and date at job start Tue Mar 31 2020 14:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47423 * 2 1 4 4 C 1.46494 * 119.99861 * 92.83654 * 3 2 1 5 5 C 1.52999 * 109.47631 * 90.00051 * 4 3 2 6 6 N 1.46497 * 109.47380 * 179.97438 * 5 4 3 7 7 C 1.36944 * 120.00005 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99492 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99185 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00483 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47113 * 89.99598 * 11 9 7 13 13 H 1.48503 * 109.47478 * 209.99800 * 11 9 7 14 14 H 1.48501 * 109.47171 * 330.00075 * 11 9 7 15 15 C 1.34780 * 120.00007 * 272.83680 * 3 2 1 16 16 O 1.21613 * 119.99909 * 185.26745 * 15 3 2 17 17 C 1.47418 * 119.99937 * 5.26712 * 15 3 2 18 18 N 1.36071 * 126.45107 * 5.84152 * 17 15 3 19 19 C 1.29933 * 108.47969 * 179.97438 * 18 17 15 20 20 O 1.34053 * 109.24153 * 359.97438 * 19 18 17 21 21 C 1.34261 * 108.22858 * 359.77133 * 20 19 18 22 22 C 1.50693 * 126.52724 * 180.23019 * 21 20 19 23 23 H 1.09000 * 109.82219 * 195.86556 * 22 21 20 24 24 C 1.54381 * 109.83360 * 74.97316 * 22 21 20 25 25 C 1.55449 * 102.18508 * 219.18363 * 24 22 21 26 26 C 1.54946 * 100.99013 * 34.04161 * 25 24 22 27 27 O 1.43245 * 109.83055 * 316.74690 * 22 21 20 28 28 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46904 * 299.99729 * 1 2 3 30 30 H 1.08999 * 109.47311 * 59.99683 * 1 2 3 31 31 H 1.09000 * 109.47485 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.47588 * 119.99979 * 2 1 3 33 33 H 1.09003 * 109.47706 * 329.99805 * 4 3 2 34 34 H 1.09010 * 109.47262 * 210.00061 * 4 3 2 35 35 H 1.09005 * 109.46865 * 59.99954 * 5 4 3 36 36 H 1.08999 * 109.47156 * 299.99999 * 5 4 3 37 37 H 0.97000 * 120.00246 * 0.02562 * 6 5 4 38 38 H 0.97005 * 119.99161 * 180.02562 * 10 9 7 39 39 H 1.07995 * 125.37465 * 180.02562 * 19 18 17 40 40 H 1.08996 * 110.84399 * 337.32208 * 24 22 21 41 41 H 1.08998 * 110.84787 * 100.94219 * 24 22 21 42 42 H 1.09001 * 111.05719 * 276.12080 * 25 24 22 43 43 H 1.09006 * 111.17951 * 152.01043 * 25 24 22 44 44 H 1.09005 * 110.30361 * 204.68954 * 26 25 24 45 45 H 1.08998 * 110.31262 * 82.51834 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3217 2.0508 1.2671 5 6 3.7856 1.8037 1.6370 6 7 4.0891 2.4738 2.9039 7 6 5.3476 2.3916 3.4377 8 1 6.1163 1.8331 2.9245 9 6 5.6352 3.0271 4.6378 10 7 6.8449 2.9484 5.1505 11 14 4.3057 3.9937 5.5250 12 1 3.5815 3.0958 6.4602 13 1 4.9277 5.1055 6.2881 14 1 3.3508 4.5482 4.5321 15 6 2.1886 2.0358 -1.1658 16 8 2.6837 3.1466 -1.1728 17 6 1.7746 1.4053 -2.4324 18 7 1.1110 0.2253 -2.5691 19 6 0.9233 0.0025 -3.8353 20 8 1.4487 1.0118 -4.5440 21 6 1.9784 1.8972 -3.6849 22 6 2.6704 3.1879 -4.0399 23 1 3.2343 3.5532 -3.1817 24 6 1.6262 4.2416 -4.4676 25 6 2.3446 4.9556 -5.6469 26 6 3.1388 3.7777 -6.2656 27 8 3.5538 2.9770 -5.1476 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6770 1.6541 2.0514 34 1 2.1493 3.1221 1.1624 35 1 4.4305 2.2006 0.8528 36 1 3.9581 0.7325 1.7418 37 1 3.3985 2.9752 3.3650 38 1 7.0458 3.3922 5.9894 39 1 0.4224 -0.8592 -4.2510 40 1 0.7078 3.7622 -4.8062 41 1 1.4241 4.9395 -3.6551 42 1 3.0155 5.7338 -5.2832 43 1 1.6254 5.3613 -6.3585 44 1 4.0081 4.1508 -6.8072 45 1 2.4986 3.1972 -6.9298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754061849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:48 Heat of formation + Delta-G solvation = -50.838868 kcal Electronic energy + Delta-G solvation = -28014.548429 eV Core-core repulsion = 24034.116297 eV Total energy + Delta-G solvation = -3980.432132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.55038 -40.98322 -40.43318 -37.71201 -36.67555 -35.75267 -33.76052 -33.43677 -32.62611 -31.74364 -30.07870 -28.94331 -26.20149 -24.83323 -24.44080 -24.01789 -23.23012 -22.77966 -22.16812 -20.74089 -19.71903 -18.71215 -17.97828 -17.83996 -17.67130 -17.47219 -16.94076 -16.49352 -16.33390 -16.03797 -15.50442 -15.48148 -15.08248 -14.92036 -14.75009 -14.69469 -14.59444 -14.15846 -13.73616 -13.41603 -13.03668 -12.94550 -12.91545 -12.86801 -12.68865 -12.65742 -12.37251 -12.28678 -12.13375 -11.97114 -11.85104 -11.78890 -11.56912 -11.13506 -11.02327 -10.90088 -10.14880 -9.73424 -9.38819 -8.06318 -5.42682 -0.09802 1.02437 1.37262 1.42103 1.44449 1.49649 1.83522 2.09504 2.46784 2.72308 2.97797 3.24326 3.29590 3.37745 3.58341 3.70138 3.81522 4.01742 4.05535 4.11667 4.13192 4.20447 4.27295 4.35287 4.46325 4.54420 4.56888 4.67656 4.71611 4.76718 4.84051 4.86679 4.93047 4.95236 5.02908 5.08854 5.14016 5.21924 5.51113 5.52707 5.69430 5.79671 6.16167 6.19922 6.44451 6.93807 7.02133 7.74043 7.96924 9.15177 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003190 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.311972 B = 8776.610933 C = 9976.238156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.103 3.897 3 N -0.589 5.589 4 C 0.120 3.880 5 C 0.151 3.849 6 N -0.752 5.752 7 C -0.244 4.244 8 H 0.050 0.950 9 C -0.062 4.062 10 N -0.983 5.983 11 Si 0.962 3.038 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.252 1.252 15 C 0.588 3.412 16 O -0.564 6.564 17 C -0.077 4.077 18 N -0.471 5.471 19 C 0.197 3.803 20 O -0.191 6.191 21 C 0.027 3.973 22 C 0.150 3.850 23 H 0.113 0.887 24 C -0.140 4.140 25 C -0.146 4.146 26 C 0.038 3.962 27 O -0.394 6.394 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.004 0.996 36 H 0.030 0.970 37 H 0.369 0.631 38 H 0.261 0.739 39 H 0.308 0.692 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.091 -4.075 -26.527 34.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 N -0.319 5.319 4 C -0.003 4.003 5 C 0.023 3.977 6 N -0.399 5.399 7 C -0.375 4.375 8 H 0.068 0.932 9 C -0.253 4.253 10 N -0.633 5.633 11 Si 0.788 3.212 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.176 1.176 15 C 0.376 3.624 16 O -0.444 6.444 17 C -0.195 4.195 18 N -0.200 5.200 19 C -0.031 4.031 20 O -0.077 6.077 21 C -0.031 4.031 22 C 0.091 3.909 23 H 0.131 0.869 24 C -0.177 4.177 25 C -0.183 4.183 26 C -0.038 4.038 27 O -0.313 6.313 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.022 0.978 36 H 0.048 0.952 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.323 0.677 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.647 -4.128 -26.038 33.485 hybrid contribution 0.155 0.850 0.476 0.986 sum -20.492 -3.278 -25.562 32.925 Atomic orbital electron populations 1.21942 0.93911 1.03050 1.01150 1.21997 0.96225 0.79678 1.03964 1.47786 1.63737 1.15781 1.04642 1.21505 0.95148 0.98543 0.85152 1.20926 0.94859 0.95439 0.86472 1.42469 1.09854 1.63249 1.24345 1.18975 0.88267 1.26881 1.03345 0.93215 1.25594 0.99114 1.01934 0.98704 1.69904 1.21678 1.49905 1.21776 0.85311 0.78867 0.78330 0.78702 1.19477 1.21926 1.17646 1.17222 0.77801 0.84413 0.82951 1.90764 1.45916 1.21068 1.86670 1.21177 1.08817 0.95974 0.93567 1.71005 1.16166 1.13253 1.19592 1.29453 0.96064 0.92873 0.84712 1.84416 1.56103 1.28238 1.38938 1.24158 0.97528 0.93786 0.87593 1.21662 0.90811 0.86354 0.92046 0.86931 1.23180 0.97768 0.96693 1.00092 1.23343 1.00047 0.97947 0.96947 1.23753 1.00398 0.91191 0.88421 1.88521 1.51631 1.68065 1.23108 0.89773 0.93634 0.92664 0.88378 0.90206 0.87612 0.90747 0.97782 0.95223 0.79682 0.93072 0.67713 0.89322 0.88920 0.89694 0.86646 0.87765 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.66 71.98 0.70 -1.96 16 2 C 0.10 2.39 5.67 86.38 0.49 2.88 16 3 N -0.59 -17.75 2.48 -825.68 -2.04 -19.80 16 4 C 0.12 4.01 5.47 86.38 0.47 4.48 16 5 C 0.15 6.48 6.58 86.38 0.57 7.05 16 6 N -0.75 -37.86 5.41 -343.45 -1.86 -39.71 16 7 C -0.24 -14.85 10.47 84.03 0.88 -13.97 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 9 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 10 N -0.98 -65.00 13.97 21.65 0.30 -64.70 16 11 Si 0.96 46.51 27.73 68.60 1.90 48.41 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 15 C 0.59 19.31 7.64 86.66 0.66 19.98 16 16 O -0.56 -21.90 14.25 -4.07 -0.06 -21.96 16 17 C -0.08 -2.05 6.48 40.41 0.26 -1.79 16 18 N -0.47 -9.37 6.24 -305.15 -1.91 -11.28 16 19 C 0.20 2.47 13.19 130.52 1.72 4.19 16 20 O -0.19 -3.51 10.73 0.38 0.00 -3.50 16 21 C 0.03 0.66 6.19 25.18 0.16 0.82 16 22 C 0.15 3.67 3.73 30.31 0.11 3.78 16 23 H 0.11 3.46 5.94 -2.39 -0.01 3.45 16 24 C -0.14 -2.39 6.55 31.91 0.21 -2.18 16 25 C -0.15 -1.78 7.16 32.10 0.23 -1.55 16 26 C 0.04 0.56 7.78 72.65 0.57 1.13 16 27 O -0.39 -9.66 11.00 -148.92 -1.64 -11.30 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 1.12 6.55 -2.39 -0.02 1.10 16 31 H 0.10 2.28 5.69 -2.39 -0.01 2.27 16 32 H 0.08 1.78 8.05 -2.38 -0.02 1.77 16 33 H 0.11 2.99 8.07 -2.39 -0.02 2.97 16 34 H 0.07 2.66 7.50 -2.38 -0.02 2.64 16 35 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.37 17.21 5.53 -92.71 -0.51 16.69 16 38 H 0.26 16.24 8.31 -92.70 -0.77 15.47 16 39 H 0.31 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.09 1.30 7.84 -2.39 -0.02 1.29 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -82.76 367.49 2.64 -80.12 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.44 Total: 24.18 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.49 Total: 19.53 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -5.50 Total: -135.48 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.69 Total: -36.76 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -82.76 2.64 -80.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754061849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.283 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds