Wall clock time and date at job start Tue Mar 31 2020 14:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46743 * 2 1 4 4 C 1.50703 * 109.47039 * 240.00577 * 2 1 3 5 5 O 1.21281 * 119.99759 * 252.22374 * 4 2 1 6 6 N 1.34773 * 119.99874 * 72.22021 * 4 2 1 7 7 C 1.46499 * 120.00355 * 0.02562 * 6 4 2 8 8 C 1.46507 * 119.99920 * 179.97438 * 6 4 2 9 9 C 1.53942 * 113.74280 * 141.25669 * 8 6 4 10 10 N 1.47812 * 86.03296 * 90.88549 * 9 8 6 11 11 C 1.36945 * 134.45841 * 204.64238 * 10 9 8 12 12 H 1.07995 * 120.00060 * 179.86786 * 11 10 9 13 13 C 1.38816 * 119.99497 * 359.86893 * 11 10 9 14 14 N 1.31612 * 120.00153 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99538 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46758 * 90.00063 * 15 13 11 17 17 H 1.48502 * 109.46946 * 210.00117 * 15 13 11 18 18 H 1.48497 * 109.47367 * 330.00229 * 15 13 11 19 19 C 1.47579 * 91.05267 * 24.54924 * 10 9 8 20 20 N 1.46893 * 109.47109 * 120.00486 * 2 1 3 21 21 C 1.46898 * 110.99832 * 287.54410 * 20 2 1 22 22 C 1.46902 * 111.00119 * 51.49791 * 20 2 1 23 23 C 1.53001 * 109.47017 * 163.53407 * 22 20 2 24 24 F 1.39900 * 109.47154 * 65.56470 * 23 22 20 25 25 F 1.39897 * 109.47276 * 185.56387 * 23 22 20 26 26 F 1.39899 * 109.47252 * 305.56488 * 23 22 20 27 27 H 1.09003 * 109.46708 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46980 * 299.99274 * 1 2 3 29 29 H 1.08995 * 109.47306 * 59.99735 * 1 2 3 30 30 H 1.08995 * 109.47138 * 269.99731 * 7 6 4 31 31 H 1.09002 * 109.46764 * 29.99804 * 7 6 4 32 32 H 1.09001 * 109.47342 * 149.99832 * 7 6 4 33 33 H 1.09002 * 112.94307 * 9.66883 * 8 6 4 34 34 H 1.08997 * 113.77029 * 205.14855 * 9 8 6 35 35 H 1.08999 * 113.76992 * 336.55569 * 9 8 6 36 36 H 0.97005 * 120.00250 * 180.02562 * 14 13 11 37 37 H 1.09000 * 113.77273 * 221.15330 * 19 10 9 38 38 H 1.08997 * 113.76784 * 89.75417 * 19 10 9 39 39 H 1.09001 * 109.47372 * 67.39947 * 21 20 2 40 40 H 1.09006 * 109.47091 * 187.39558 * 21 20 2 41 41 H 1.08999 * 109.47293 * 307.39769 * 21 20 2 42 42 H 1.08992 * 109.47217 * 283.53009 * 22 20 2 43 43 H 1.08994 * 109.46919 * 43.53700 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.5368 -1.8089 -1.1331 6 7 1.9210 -0.1247 -2.4393 7 6 1.3121 1.2026 -2.5570 8 6 2.4098 -0.8150 -3.6355 9 6 1.5084 -0.6301 -4.8697 10 7 2.3488 0.5457 -5.1798 11 6 2.1575 1.7010 -5.8898 12 1 2.9546 2.4255 -5.9671 13 6 0.9390 1.9406 -6.5100 14 7 -0.0322 1.0573 -6.4162 15 14 0.6778 3.5169 -7.4779 16 1 1.0735 3.3002 -8.8927 17 1 -0.7550 3.9028 -7.4181 18 1 1.5072 4.6006 -6.8924 19 6 3.4755 -0.0240 -4.4156 20 7 2.0197 -0.6926 1.1993 21 6 1.8054 0.1227 2.4023 22 6 1.3902 -2.0125 1.3389 23 6 2.1949 -2.8593 2.3271 24 9 2.1174 -2.2880 3.6018 25 9 1.6710 -4.1560 2.3646 26 9 3.5320 -2.9082 1.9185 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.2383 1.0973 -2.7116 31 1 1.4938 1.7680 -1.6429 32 1 1.7511 1.7300 -3.4039 33 1 2.6853 -1.8522 -3.4448 34 1 1.5925 -1.4351 -5.5997 35 1 0.4756 -0.3812 -4.6260 36 1 -0.8836 1.2246 -6.8499 37 1 4.0102 0.7077 -3.8100 38 1 4.1387 -0.6506 -5.0119 39 1 0.7364 0.2095 2.5968 40 1 2.2923 -0.3519 3.2544 41 1 2.2285 1.1154 2.2487 42 1 0.3720 -1.8922 1.7087 43 1 1.3683 -2.5090 0.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754582525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:07 Heat of formation + Delta-G solvation = -102.410427 kcal Electronic energy + Delta-G solvation = -29395.651128 eV Core-core repulsion = 24871.125945 eV Total energy + Delta-G solvation = -4524.525183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.05606 -47.66259 -47.40631 -40.34392 -38.41339 -36.81056 -34.25068 -32.23918 -31.10955 -29.43071 -27.90900 -26.36158 -25.82725 -24.83575 -24.35012 -23.11314 -21.79333 -19.80334 -18.55369 -18.49164 -18.13803 -17.70699 -16.96188 -16.58227 -15.97969 -15.19021 -15.06605 -14.91380 -14.67345 -14.53015 -14.34416 -14.28389 -14.00216 -13.73783 -13.66933 -13.64317 -13.62655 -13.08637 -12.81686 -12.68752 -12.39592 -12.26842 -12.03011 -11.84087 -11.67594 -11.55693 -11.40096 -11.30447 -11.19321 -10.91708 -10.63762 -10.19119 -9.83107 -9.59288 -9.44384 -8.88437 -8.65486 -8.04607 -6.94323 -5.85861 -3.18933 2.66994 2.86346 3.14889 3.32213 3.38212 3.39570 3.56462 3.85404 4.08169 4.37361 4.43515 4.61057 4.74569 4.86790 4.94337 5.06569 5.11049 5.20602 5.38691 5.40454 5.44611 5.47591 5.54421 5.69759 5.72311 5.86120 6.09801 6.14113 6.18612 6.42992 6.46620 6.49273 6.59486 6.70059 6.90439 7.12854 7.27172 7.48274 7.86011 7.92666 8.50940 8.95356 9.61518 10.50242 11.30202 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.003089 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.662939 B = 9060.922336 C = 9453.432539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.068 3.932 3 H 0.115 0.885 4 C 0.516 3.484 5 O -0.539 6.539 6 N -0.573 5.573 7 C 0.072 3.928 8 C 0.089 3.911 9 C 0.154 3.846 10 N -0.609 5.609 11 C -0.226 4.226 12 H 0.079 0.921 13 C -0.003 4.003 14 N -0.918 5.918 15 Si 0.908 3.092 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.106 3.894 20 N -0.514 5.514 21 C 0.005 3.995 22 C 0.004 3.996 23 C 0.460 3.540 24 F -0.190 7.190 25 F -0.187 7.187 26 F -0.167 7.167 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -2.856 17.770 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.043 4.043 3 H 0.132 0.868 4 C 0.303 3.697 5 O -0.417 6.417 6 N -0.304 5.304 7 C -0.071 4.071 8 C -0.016 4.016 9 C 0.028 3.972 10 N -0.336 5.336 11 C -0.353 4.353 12 H 0.097 0.903 13 C -0.200 4.200 14 N -0.565 5.565 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.206 1.206 19 C -0.021 4.021 20 N -0.238 5.238 21 C -0.142 4.142 22 C -0.126 4.126 23 C 0.405 3.595 24 F -0.172 7.172 25 F -0.168 7.168 26 F -0.148 7.148 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.568 -3.267 17.584 17.894 hybrid contribution -0.922 0.929 -0.571 1.428 sum -0.354 -2.337 17.013 17.177 Atomic orbital electron populations 1.22481 0.94559 1.03451 1.04181 1.21694 0.94773 0.98973 0.88842 0.86769 1.20234 0.79196 0.86204 0.84109 1.90617 1.44893 1.20505 1.85677 1.47383 1.58560 1.18903 1.05556 1.22070 0.98618 0.83067 1.03323 1.22924 0.97789 0.95545 0.85357 1.22662 0.97025 0.88412 0.89146 1.46236 1.09549 1.16996 1.60809 1.19005 0.97795 0.93311 1.25220 0.90303 1.24747 0.96314 0.98349 1.00614 1.69811 1.04080 1.34883 1.47680 0.86189 0.77095 0.82696 0.80178 1.21667 1.21665 1.20613 1.23002 0.92147 0.94712 0.92220 1.61600 1.57634 1.01649 1.02887 1.22841 1.00318 0.98604 0.92474 1.23473 0.95304 0.92087 1.01721 1.20475 0.79773 0.78764 0.80463 1.93090 1.96320 1.84122 1.43638 1.93168 1.86642 1.40422 1.96589 1.93225 1.35333 1.96244 1.90021 0.91702 0.91300 0.89886 0.92655 0.93128 0.86762 0.88746 0.94507 0.90326 0.93612 0.93543 0.93883 0.94638 0.89616 0.90513 0.90580 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.31 37.16 0.31 -1.56 16 2 C 0.07 0.81 1.91 -68.86 -0.13 0.68 16 3 H 0.11 1.22 6.50 -51.93 -0.34 0.88 16 4 C 0.52 8.16 6.75 -10.99 -0.07 8.09 16 5 O -0.54 -9.96 13.65 5.56 0.08 -9.88 16 6 N -0.57 -9.67 3.09 -175.76 -0.54 -10.21 16 7 C 0.07 1.15 8.15 59.85 0.49 1.64 16 8 C 0.09 1.67 4.52 -70.16 -0.32 1.35 16 9 C 0.15 3.39 6.77 -2.84 -0.02 3.37 16 10 N -0.61 -14.27 2.30 -177.92 -0.41 -14.68 16 11 C -0.23 -5.81 9.77 -15.05 -0.15 -5.96 16 12 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 13 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 14 N -0.92 -25.22 11.39 55.49 0.63 -24.59 16 15 Si 0.91 20.82 29.55 -169.99 -5.02 15.80 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.11 2.10 8.35 -2.97 -0.02 2.08 16 20 N -0.51 -6.07 4.28 -236.29 -1.01 -7.08 16 21 C 0.01 0.05 8.83 60.06 0.53 0.58 16 22 C 0.00 0.04 3.39 -3.82 -0.01 0.03 16 23 C 0.46 5.66 3.25 37.16 0.12 5.78 16 24 F -0.19 -2.15 14.55 2.25 0.03 -2.12 16 25 F -0.19 -2.32 17.32 2.25 0.04 -2.28 16 26 F -0.17 -2.46 17.14 2.25 0.04 -2.42 16 27 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 28 H 0.07 0.55 6.95 -51.93 -0.36 0.19 16 29 H 0.08 0.88 5.99 -51.93 -0.31 0.57 16 30 H 0.05 0.91 7.26 -51.93 -0.38 0.53 16 31 H 0.05 0.64 6.10 -51.93 -0.32 0.32 16 32 H 0.11 2.25 5.34 -51.93 -0.28 1.98 16 33 H 0.09 1.77 7.22 -51.93 -0.37 1.39 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.89 6.90 -51.93 -0.36 1.53 16 36 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.27 6.93 -51.93 -0.36 -0.09 16 40 H 0.09 0.80 5.73 -51.93 -0.30 0.50 16 41 H 0.08 0.61 7.96 -51.93 -0.41 0.19 16 42 H 0.08 0.70 7.10 -51.93 -0.37 0.33 16 43 H 0.14 1.88 5.64 -51.93 -0.29 1.59 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -29.34 342.95 -5.98 -35.33 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.61 Total: 1.07 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 0.63 Total: 15.89 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -1.33 Total: -56.55 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.34 -5.98 -35.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754582525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.084 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds