Wall clock time and date at job start Tue Mar 31 2020 14:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46743 * 2 1 4 4 C 1.50703 * 109.47039 * 240.00577 * 2 1 3 5 5 O 1.21281 * 119.99759 * 252.22374 * 4 2 1 6 6 N 1.34773 * 119.99874 * 72.22021 * 4 2 1 7 7 C 1.46499 * 120.00355 * 0.02562 * 6 4 2 8 8 C 1.46507 * 119.99920 * 179.97438 * 6 4 2 9 9 C 1.53942 * 113.74280 * 141.25669 * 8 6 4 10 10 N 1.47812 * 86.03296 * 90.88549 * 9 8 6 11 11 C 1.36945 * 134.45841 * 204.64238 * 10 9 8 12 12 H 1.07995 * 120.00060 * 179.86786 * 11 10 9 13 13 C 1.38816 * 119.99497 * 359.86893 * 11 10 9 14 14 N 1.31612 * 120.00153 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99538 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46758 * 90.00063 * 15 13 11 17 17 H 1.48502 * 109.46946 * 210.00117 * 15 13 11 18 18 H 1.48497 * 109.47367 * 330.00229 * 15 13 11 19 19 C 1.47579 * 91.05267 * 24.54924 * 10 9 8 20 20 N 1.46893 * 109.47109 * 120.00486 * 2 1 3 21 21 C 1.46898 * 110.99832 * 287.54410 * 20 2 1 22 22 C 1.46902 * 111.00119 * 51.49791 * 20 2 1 23 23 C 1.53001 * 109.47017 * 163.53407 * 22 20 2 24 24 F 1.39900 * 109.47154 * 65.56470 * 23 22 20 25 25 F 1.39897 * 109.47276 * 185.56387 * 23 22 20 26 26 F 1.39899 * 109.47252 * 305.56488 * 23 22 20 27 27 H 1.09003 * 109.46708 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46980 * 299.99274 * 1 2 3 29 29 H 1.08995 * 109.47306 * 59.99735 * 1 2 3 30 30 H 1.08995 * 109.47138 * 269.99731 * 7 6 4 31 31 H 1.09002 * 109.46764 * 29.99804 * 7 6 4 32 32 H 1.09001 * 109.47342 * 149.99832 * 7 6 4 33 33 H 1.09002 * 112.94307 * 9.66883 * 8 6 4 34 34 H 1.08997 * 113.77029 * 205.14855 * 9 8 6 35 35 H 1.08999 * 113.76992 * 336.55569 * 9 8 6 36 36 H 0.97005 * 120.00250 * 180.02562 * 14 13 11 37 37 H 1.09000 * 113.77273 * 221.15330 * 19 10 9 38 38 H 1.08997 * 113.76784 * 89.75417 * 19 10 9 39 39 H 1.09001 * 109.47372 * 67.39947 * 21 20 2 40 40 H 1.09006 * 109.47091 * 187.39558 * 21 20 2 41 41 H 1.08999 * 109.47293 * 307.39769 * 21 20 2 42 42 H 1.08992 * 109.47217 * 283.53009 * 22 20 2 43 43 H 1.08994 * 109.46919 * 43.53700 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.5368 -1.8089 -1.1331 6 7 1.9210 -0.1247 -2.4393 7 6 1.3121 1.2026 -2.5570 8 6 2.4098 -0.8150 -3.6355 9 6 1.5084 -0.6301 -4.8697 10 7 2.3488 0.5457 -5.1798 11 6 2.1575 1.7010 -5.8898 12 1 2.9546 2.4255 -5.9671 13 6 0.9390 1.9406 -6.5100 14 7 -0.0322 1.0573 -6.4162 15 14 0.6778 3.5169 -7.4779 16 1 1.0735 3.3002 -8.8927 17 1 -0.7550 3.9028 -7.4181 18 1 1.5072 4.6006 -6.8924 19 6 3.4755 -0.0240 -4.4156 20 7 2.0197 -0.6926 1.1993 21 6 1.8054 0.1227 2.4023 22 6 1.3902 -2.0125 1.3389 23 6 2.1949 -2.8593 2.3271 24 9 2.1174 -2.2880 3.6018 25 9 1.6710 -4.1560 2.3646 26 9 3.5320 -2.9082 1.9185 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.2383 1.0973 -2.7116 31 1 1.4938 1.7680 -1.6429 32 1 1.7511 1.7300 -3.4039 33 1 2.6853 -1.8522 -3.4448 34 1 1.5925 -1.4351 -5.5997 35 1 0.4756 -0.3812 -4.6260 36 1 -0.8836 1.2246 -6.8499 37 1 4.0102 0.7077 -3.8100 38 1 4.1387 -0.6506 -5.0119 39 1 0.7364 0.2095 2.5968 40 1 2.2923 -0.3519 3.2544 41 1 2.2285 1.1154 2.2487 42 1 0.3720 -1.8922 1.7087 43 1 1.3683 -2.5090 0.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754582525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:06 Heat of formation + Delta-G solvation = -120.795655 kcal Electronic energy + Delta-G solvation = -29396.448371 eV Core-core repulsion = 24871.125945 eV Total energy + Delta-G solvation = -4525.322427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.03029 -48.60479 -48.44422 -41.59262 -39.80375 -38.00813 -35.67862 -34.07669 -32.15388 -30.28982 -29.64498 -27.64512 -26.78889 -26.54945 -25.55496 -24.49399 -23.01468 -21.08197 -19.78584 -19.50660 -19.31606 -18.82560 -18.55000 -17.87514 -17.22128 -16.75651 -16.39252 -16.13280 -15.73556 -15.64633 -15.47234 -15.23284 -15.20843 -15.01271 -14.81648 -14.67449 -14.64620 -14.51638 -14.23131 -14.05430 -13.51024 -13.27185 -13.18409 -13.03616 -12.86506 -12.82881 -12.78341 -12.60010 -12.48642 -12.37467 -12.19136 -11.95018 -11.58411 -11.43429 -10.92866 -10.55067 -9.56817 -9.43025 -8.84138 -7.85080 -5.18539 1.49876 1.51892 1.59279 1.61980 1.74494 1.98346 2.50309 2.56723 2.93695 3.14897 3.29852 3.43374 3.46742 3.57131 3.85872 3.94311 3.99653 4.12237 4.29540 4.40418 4.47840 4.50383 4.55251 4.61748 4.68515 4.78332 4.80635 4.86248 4.92695 5.04742 5.10519 5.15333 5.28072 5.39020 5.52032 5.62379 5.74420 5.85589 5.94352 6.60344 6.95838 7.23136 7.64955 8.59084 9.30575 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.003089 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.662939 B = 9060.922336 C = 9453.432539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 H 0.133 0.867 4 C 0.513 3.487 5 O -0.567 6.567 6 N -0.578 5.578 7 C 0.083 3.917 8 C 0.109 3.891 9 C 0.155 3.845 10 N -0.625 5.625 11 C -0.228 4.228 12 H 0.081 0.919 13 C -0.053 4.053 14 N -0.946 5.946 15 Si 0.969 3.031 16 H -0.296 1.296 17 H -0.295 1.295 18 H -0.267 1.267 19 C 0.110 3.890 20 N -0.533 5.533 21 C 0.005 3.995 22 C 0.008 3.992 23 C 0.460 3.540 24 F -0.183 7.183 25 F -0.189 7.189 26 F -0.185 7.185 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.247 0.753 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -1.521 19.595 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.033 4.033 3 H 0.151 0.849 4 C 0.302 3.698 5 O -0.447 6.447 6 N -0.309 5.309 7 C -0.060 4.060 8 C 0.003 3.997 9 C 0.029 3.971 10 N -0.352 5.352 11 C -0.356 4.356 12 H 0.099 0.901 13 C -0.247 4.247 14 N -0.595 5.595 15 Si 0.798 3.202 16 H -0.223 1.223 17 H -0.222 1.222 18 H -0.192 1.192 19 C -0.016 4.016 20 N -0.257 5.257 21 C -0.141 4.141 22 C -0.121 4.121 23 C 0.405 3.595 24 F -0.164 7.164 25 F -0.171 7.171 26 F -0.166 7.166 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.545 -1.923 19.443 19.546 hybrid contribution -0.850 0.455 -1.079 1.447 sum -0.305 -1.468 18.364 18.425 Atomic orbital electron populations 1.22461 0.92845 1.03565 1.05242 1.21661 0.95887 0.98940 0.86807 0.84912 1.21018 0.78210 0.85918 0.84677 1.90614 1.46018 1.21918 1.86119 1.47441 1.58866 1.19206 1.05385 1.21945 0.97602 0.82609 1.03825 1.22550 0.96021 0.95883 0.85233 1.22529 0.96277 0.87708 0.90619 1.46410 1.11215 1.16880 1.60692 1.19288 0.97720 0.94151 1.24454 0.90078 1.25413 0.96255 1.01050 1.01978 1.69979 1.04187 1.36508 1.48807 0.85228 0.76622 0.79980 0.78359 1.22332 1.22167 1.19198 1.23094 0.91800 0.94810 0.91917 1.61539 1.58375 1.02015 1.03805 1.22900 1.01709 0.98629 0.90886 1.23398 0.96472 0.91866 1.00408 1.20625 0.79050 0.78837 0.80962 1.93103 1.96221 1.83945 1.43153 1.93161 1.86548 1.40744 1.96637 1.93187 1.36823 1.96340 1.90284 0.92132 0.88403 0.90596 0.93487 0.89125 0.90261 0.88485 0.95832 0.92658 0.94365 0.92688 0.92923 0.92662 0.90112 0.89171 0.87861 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.31 71.98 0.60 -2.46 16 2 C 0.08 1.63 1.91 44.17 0.08 1.71 16 3 H 0.13 2.29 6.50 -2.39 -0.02 2.28 16 4 C 0.51 15.51 6.75 87.66 0.59 16.10 16 5 O -0.57 -20.61 13.65 -3.03 -0.04 -20.65 16 6 N -0.58 -18.98 3.09 -828.36 -2.56 -21.55 16 7 C 0.08 2.55 8.15 127.77 1.04 3.60 16 8 C 0.11 4.10 4.52 46.75 0.21 4.31 16 9 C 0.15 7.01 6.77 86.44 0.59 7.59 16 10 N -0.62 -29.48 2.30 -716.82 -1.65 -31.13 16 11 C -0.23 -11.75 9.77 84.03 0.82 -10.93 16 12 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 13 C -0.05 -2.80 5.50 84.86 0.47 -2.33 16 14 N -0.95 -53.03 11.39 21.65 0.25 -52.78 16 15 Si 0.97 42.93 29.55 68.60 2.03 44.96 16 16 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 C 0.11 4.30 8.35 86.48 0.72 5.02 16 20 N -0.53 -11.16 4.28 -901.47 -3.86 -15.02 16 21 C 0.01 0.08 8.83 127.69 1.13 1.20 16 22 C 0.01 0.17 3.39 86.30 0.29 0.46 16 23 C 0.46 10.71 3.25 71.98 0.23 10.94 16 24 F -0.18 -3.78 14.55 44.97 0.65 -3.13 16 25 F -0.19 -4.52 17.32 44.97 0.78 -3.74 16 26 F -0.18 -5.35 17.14 44.97 0.77 -4.58 16 27 H 0.06 1.08 6.67 -2.39 -0.02 1.06 16 28 H 0.10 1.10 6.95 -2.39 -0.02 1.09 16 29 H 0.08 1.42 5.99 -2.39 -0.01 1.40 16 30 H 0.05 1.52 7.26 -2.39 -0.02 1.50 16 31 H 0.09 2.02 6.10 -2.39 -0.01 2.00 16 32 H 0.08 3.08 5.34 -2.39 -0.01 3.07 16 33 H 0.10 3.63 7.22 -2.39 -0.02 3.61 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 2.75 6.90 -2.39 -0.02 2.74 16 36 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.05 0.58 6.93 -2.39 -0.02 0.57 16 40 H 0.08 1.26 5.73 -2.38 -0.01 1.25 16 41 H 0.09 1.06 7.96 -2.39 -0.02 1.04 16 42 H 0.10 1.59 7.10 -2.39 -0.02 1.57 16 43 H 0.12 3.06 5.64 -2.39 -0.01 3.05 16 Total: -1.00 -63.87 342.95 4.19 -59.68 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.05 Total: 12.73 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 6.78 Total: 35.21 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -7.83 Total: -120.48 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.04 Total: -20.65 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 2.20 Total: -11.45 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.87 4.19 -59.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754582525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.116 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds