Wall clock time and date at job start Tue Mar 31 2020 14:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42898 * 109.47231 * 2 1 4 4 C 1.35435 * 117.00355 * 179.97438 * 3 2 1 5 5 N 1.32238 * 119.79662 * 359.97438 * 4 3 2 6 6 C 1.31872 * 121.79651 * 179.97438 * 5 4 3 7 7 C 1.38354 * 121.18964 * 0.02562 * 6 5 4 8 8 C 1.38332 * 119.45767 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.35179 * 0.02562 * 8 7 6 10 10 C 1.47513 * 120.60187 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00263 * 234.99123 * 10 9 8 12 12 N 1.34779 * 120.00437 * 54.98828 * 10 9 8 13 13 C 1.46500 * 119.99749 * 5.56683 * 12 10 9 14 14 C 1.52996 * 109.47110 * 94.86203 * 13 12 10 15 15 O 1.42904 * 109.47025 * 65.00661 * 14 13 12 16 16 C 1.46502 * 120.00270 * 185.56843 * 12 10 9 17 17 C 1.52995 * 109.47349 * 89.99859 * 16 12 10 18 18 N 1.46502 * 109.47349 * 180.02562 * 17 16 12 19 19 C 1.36941 * 120.00002 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99727 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99746 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00120 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47135 * 89.99912 * 23 21 19 25 25 H 1.48503 * 109.47250 * 209.99742 * 23 21 19 26 26 H 1.48496 * 109.47071 * 330.00016 * 23 21 19 27 27 H 1.09001 * 109.47311 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47734 * 299.99980 * 1 2 3 29 29 H 1.08997 * 109.47263 * 60.00198 * 1 2 3 30 30 H 1.08999 * 109.47734 * 240.00020 * 2 1 3 31 31 H 1.09005 * 109.47263 * 120.00081 * 2 1 3 32 32 H 1.08009 * 119.40760 * 179.97438 * 6 5 4 33 33 H 1.08008 * 120.27557 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.82591 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47290 * 214.86600 * 13 12 10 36 36 H 1.09008 * 109.47201 * 334.86204 * 13 12 10 37 37 H 1.09003 * 109.47007 * 184.99752 * 14 13 12 38 38 H 1.08997 * 109.47189 * 305.00179 * 14 13 12 39 39 H 0.96696 * 114.00188 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.46738 * 209.99698 * 16 12 10 41 41 H 1.09000 * 109.46924 * 329.99828 * 16 12 10 42 42 H 1.09001 * 109.47528 * 300.00255 * 17 16 12 43 43 H 1.08999 * 109.47041 * 59.99552 * 17 16 12 44 44 H 0.96998 * 119.99413 * 359.97438 * 18 17 16 45 45 H 0.97002 * 120.00096 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4634 0.6003 0.0016 7 6 6.0624 1.8475 0.0011 8 6 5.2713 2.9822 0.0001 9 6 3.8805 2.8229 0.0000 10 6 2.9900 3.9990 -0.0017 11 8 2.1412 4.1201 0.8605 12 7 3.1171 4.9393 -0.9588 13 6 4.0550 4.7356 -2.0657 14 6 3.3109 4.1368 -3.2609 15 8 2.3525 5.0792 -3.7462 16 6 2.3176 6.1651 -0.8924 17 6 3.0817 7.2303 -0.1035 18 7 2.2818 8.4559 -0.0365 19 6 2.7654 9.5538 0.6238 20 1 3.7365 9.5163 1.0947 21 6 2.0078 10.7152 0.6868 22 7 2.4727 11.7706 1.3209 23 14 0.3283 10.7801 -0.1285 24 1 -0.7096 10.3463 0.8408 25 1 0.0449 12.1700 -0.5682 26 1 0.3145 9.8759 -1.3063 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 6.0819 -0.2851 0.0029 33 1 7.1390 1.9344 0.0008 34 1 5.7156 3.9666 -0.0008 35 1 4.4924 5.6920 -2.3521 36 1 4.8456 4.0541 -1.7514 37 1 4.0231 3.9029 -4.0522 38 1 2.7996 3.2254 -2.9511 39 1 1.8427 4.7661 -4.5059 40 1 2.1254 6.5286 -1.9018 41 1 1.3705 5.9546 -0.3955 42 1 3.2739 6.8667 0.9060 43 1 4.0288 7.4407 -0.6003 44 1 1.4101 8.4898 -0.4605 45 1 1.9432 12.5821 1.3653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754896658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:42 Heat of formation + Delta-G solvation = -56.920982 kcal Electronic energy + Delta-G solvation = -27997.104541 eV Core-core repulsion = 24016.408668 eV Total energy + Delta-G solvation = -3980.695873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24923 -39.49286 -38.28938 -37.22132 -35.63204 -34.47659 -33.00203 -32.35932 -31.49688 -30.36677 -29.66523 -27.76098 -25.08819 -24.41051 -23.30725 -22.96185 -22.47289 -21.34759 -19.66711 -18.72315 -17.94899 -17.49842 -17.20385 -17.16315 -16.66640 -16.19730 -15.56436 -15.24661 -14.52175 -14.44720 -14.31716 -14.17918 -14.00260 -13.71037 -13.63964 -13.41313 -13.22666 -12.87272 -12.72428 -12.62423 -12.55199 -12.37986 -11.79704 -11.72553 -11.43781 -11.06793 -11.01876 -10.99440 -10.64683 -10.38572 -10.21121 -10.15430 -10.09286 -9.62482 -9.53021 -8.83913 -8.81566 -8.49834 -7.16595 -5.70070 -3.05477 0.51689 0.89289 2.62431 2.75377 2.96860 3.40699 3.45290 3.49178 3.52028 3.88564 4.05132 4.35315 4.46843 4.62751 4.66777 4.73889 4.74396 4.83950 4.89199 4.95745 5.03571 5.08525 5.13945 5.29241 5.39481 5.51320 5.52897 5.57130 5.57635 5.68829 5.72764 5.79857 5.81646 5.88200 6.01303 6.17577 6.51892 6.72016 6.90104 6.95147 7.36970 7.43693 7.53658 8.05431 8.24647 8.48607 9.27677 10.00187 10.20175 11.48381 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003232 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.735393 B = 8660.168744 C = 8946.314765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.289 6.289 4 C 0.363 3.637 5 N -0.542 5.542 6 C 0.156 3.844 7 C -0.215 4.215 8 C -0.014 4.014 9 C -0.195 4.195 10 C 0.567 3.433 11 O -0.512 6.512 12 N -0.593 5.593 13 C 0.101 3.899 14 C 0.061 3.939 15 O -0.562 6.562 16 C 0.108 3.892 17 C 0.147 3.853 18 N -0.752 5.752 19 C -0.241 4.241 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.936 5.936 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.276 1.276 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.376 0.624 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.025 0.975 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -28.796 -10.453 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.194 6.194 4 C 0.183 3.817 5 N -0.266 5.266 6 C -0.001 4.001 7 C -0.235 4.235 8 C -0.040 4.040 9 C -0.201 4.201 10 C 0.353 3.647 11 O -0.386 6.386 12 N -0.326 5.326 13 C -0.023 4.023 14 C -0.018 4.018 15 O -0.367 6.367 16 C -0.014 4.014 17 C 0.018 3.982 18 N -0.399 5.399 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.202 1.202 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.223 0.777 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.157 -28.853 -9.354 30.766 hybrid contribution -0.794 0.350 -1.015 1.335 sum 4.363 -28.503 -10.368 30.642 Atomic orbital electron populations 1.21819 0.92774 1.02763 1.03806 1.22669 0.95136 0.80750 1.02372 1.86359 1.16091 1.30725 1.86271 1.19676 0.84456 0.88337 0.89186 1.67439 1.06681 1.32302 1.20191 1.22615 0.89082 0.97657 0.90743 1.21938 1.01758 0.92809 1.06999 1.21648 0.90759 1.00454 0.91133 1.19977 0.94673 0.92597 1.12851 1.17825 0.83298 0.81705 0.81883 1.90839 1.34204 1.76691 1.36904 1.47647 1.42109 1.19223 1.23630 1.21882 0.91607 1.03157 0.85649 1.22634 0.91566 0.91789 0.95829 1.86576 1.54291 1.43594 1.52225 1.21777 0.94773 0.82671 1.02226 1.20897 0.93946 0.86030 0.97287 1.42548 1.19735 1.10790 1.66778 1.19034 1.02780 0.89019 1.26234 0.89280 1.24657 0.98273 0.95867 1.00399 1.69704 1.38216 1.03120 1.47347 0.86526 0.85624 0.76731 0.79600 1.20994 1.21741 1.20187 0.90261 0.91268 0.91623 0.91634 0.91444 0.81916 0.83703 0.83191 0.88841 0.88786 0.92835 0.93859 0.77681 0.89098 0.89996 0.95426 0.95703 0.80591 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.15 0.38 -0.91 16 2 C 0.07 0.66 6.03 37.15 0.22 0.88 16 3 O -0.29 -3.99 9.36 -19.72 -0.18 -4.17 16 4 C 0.36 4.69 7.50 -16.61 -0.12 4.56 16 5 N -0.54 -5.79 9.21 -12.98 -0.12 -5.91 16 6 C 0.16 1.18 11.17 -17.49 -0.20 0.98 16 7 C -0.21 -1.48 10.09 -39.50 -0.40 -1.88 16 8 C -0.01 -0.13 7.63 -38.89 -0.30 -0.43 16 9 C -0.19 -2.52 4.92 -104.69 -0.51 -3.04 16 10 C 0.57 9.31 6.81 -12.48 -0.08 9.22 16 11 O -0.51 -10.69 16.37 3.56 0.06 -10.63 16 12 N -0.59 -8.86 2.46 -174.92 -0.43 -9.29 16 13 C 0.10 1.09 5.71 -4.04 -0.02 1.06 16 14 C 0.06 0.58 7.39 37.16 0.27 0.85 16 15 O -0.56 -6.20 12.05 -35.23 -0.42 -6.63 16 16 C 0.11 1.94 5.38 -4.04 -0.02 1.92 16 17 C 0.15 3.13 6.58 -4.04 -0.03 3.10 16 18 N -0.75 -19.29 5.41 -59.91 -0.32 -19.61 16 19 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 20 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.94 -30.34 13.97 55.49 0.78 -29.57 16 23 Si 0.88 23.06 27.74 -169.99 -4.71 18.34 16 24 H -0.28 -7.38 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.58 8.11 -51.93 -0.42 0.15 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.15 0.56 8.06 -52.48 -0.42 0.13 16 34 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16 35 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.09 0.79 4.43 -51.92 -0.23 0.56 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.38 2.49 9.12 45.56 0.42 2.91 16 40 H 0.09 1.59 6.68 -51.93 -0.35 1.25 16 41 H 0.08 1.63 7.35 -51.93 -0.38 1.25 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.36 9.02 5.53 -40.82 -0.23 8.80 16 45 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -39.16 377.25 -6.57 -45.72 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.83 Total: 7.06 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.06 Total: 8.99 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.10 Total: -64.38 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.55 Total: -21.43 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.16 -6.57 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754896658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal (2) G-P(sol) polarization free energy of solvation -39.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds