Wall clock time and date at job start Tue Mar 31 2020 14:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42898 * 109.47231 * 2 1 4 4 C 1.35435 * 117.00355 * 179.97438 * 3 2 1 5 5 N 1.32238 * 119.79662 * 359.97438 * 4 3 2 6 6 C 1.31872 * 121.79651 * 179.97438 * 5 4 3 7 7 C 1.38354 * 121.18964 * 0.02562 * 6 5 4 8 8 C 1.38332 * 119.45767 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.35179 * 0.02562 * 8 7 6 10 10 C 1.47513 * 120.60187 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00263 * 234.99123 * 10 9 8 12 12 N 1.34779 * 120.00437 * 54.98828 * 10 9 8 13 13 C 1.46500 * 119.99749 * 5.56683 * 12 10 9 14 14 C 1.52996 * 109.47110 * 94.86203 * 13 12 10 15 15 O 1.42904 * 109.47025 * 65.00661 * 14 13 12 16 16 C 1.46502 * 120.00270 * 185.56843 * 12 10 9 17 17 C 1.52995 * 109.47349 * 89.99859 * 16 12 10 18 18 N 1.46502 * 109.47349 * 180.02562 * 17 16 12 19 19 C 1.36941 * 120.00002 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99727 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99746 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00120 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47135 * 89.99912 * 23 21 19 25 25 H 1.48503 * 109.47250 * 209.99742 * 23 21 19 26 26 H 1.48496 * 109.47071 * 330.00016 * 23 21 19 27 27 H 1.09001 * 109.47311 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47734 * 299.99980 * 1 2 3 29 29 H 1.08997 * 109.47263 * 60.00198 * 1 2 3 30 30 H 1.08999 * 109.47734 * 240.00020 * 2 1 3 31 31 H 1.09005 * 109.47263 * 120.00081 * 2 1 3 32 32 H 1.08009 * 119.40760 * 179.97438 * 6 5 4 33 33 H 1.08008 * 120.27557 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.82591 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47290 * 214.86600 * 13 12 10 36 36 H 1.09008 * 109.47201 * 334.86204 * 13 12 10 37 37 H 1.09003 * 109.47007 * 184.99752 * 14 13 12 38 38 H 1.08997 * 109.47189 * 305.00179 * 14 13 12 39 39 H 0.96696 * 114.00188 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.46738 * 209.99698 * 16 12 10 41 41 H 1.09000 * 109.46924 * 329.99828 * 16 12 10 42 42 H 1.09001 * 109.47528 * 300.00255 * 17 16 12 43 43 H 1.08999 * 109.47041 * 59.99552 * 17 16 12 44 44 H 0.96998 * 119.99413 * 359.97438 * 18 17 16 45 45 H 0.97002 * 120.00096 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4634 0.6003 0.0016 7 6 6.0624 1.8475 0.0011 8 6 5.2713 2.9822 0.0001 9 6 3.8805 2.8229 0.0000 10 6 2.9900 3.9990 -0.0017 11 8 2.1412 4.1201 0.8605 12 7 3.1171 4.9393 -0.9588 13 6 4.0550 4.7356 -2.0657 14 6 3.3109 4.1368 -3.2609 15 8 2.3525 5.0792 -3.7462 16 6 2.3176 6.1651 -0.8924 17 6 3.0817 7.2303 -0.1035 18 7 2.2818 8.4559 -0.0365 19 6 2.7654 9.5538 0.6238 20 1 3.7365 9.5163 1.0947 21 6 2.0078 10.7152 0.6868 22 7 2.4727 11.7706 1.3209 23 14 0.3283 10.7801 -0.1285 24 1 -0.7096 10.3463 0.8408 25 1 0.0449 12.1700 -0.5682 26 1 0.3145 9.8759 -1.3063 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 6.0819 -0.2851 0.0029 33 1 7.1390 1.9344 0.0008 34 1 5.7156 3.9666 -0.0008 35 1 4.4924 5.6920 -2.3521 36 1 4.8456 4.0541 -1.7514 37 1 4.0231 3.9029 -4.0522 38 1 2.7996 3.2254 -2.9511 39 1 1.8427 4.7661 -4.5059 40 1 2.1254 6.5286 -1.9018 41 1 1.3705 5.9546 -0.3955 42 1 3.2739 6.8667 0.9060 43 1 4.0288 7.4407 -0.6003 44 1 1.4101 8.4898 -0.4605 45 1 1.9432 12.5821 1.3653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754896658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:41 Heat of formation + Delta-G solvation = -89.763571 kcal Electronic energy + Delta-G solvation = -27998.528702 eV Core-core repulsion = 24016.408668 eV Total energy + Delta-G solvation = -3982.120034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12354 -40.60133 -39.09367 -38.19048 -37.22335 -35.99611 -34.11593 -33.38895 -33.06570 -31.30461 -30.81421 -29.20145 -26.21110 -25.44211 -24.58544 -23.99440 -23.25278 -23.13958 -20.85872 -19.70559 -19.47972 -18.79807 -18.13074 -17.99099 -17.70639 -17.27245 -16.52016 -16.36517 -16.19805 -15.72862 -15.45939 -15.30232 -15.07528 -14.98660 -14.77455 -14.72830 -14.38338 -14.24724 -13.56026 -13.50645 -13.42232 -13.35446 -13.25868 -13.04883 -12.82094 -12.59543 -12.52635 -12.26336 -12.10685 -11.84574 -11.79151 -11.39398 -11.04693 -10.96594 -10.92410 -10.61564 -9.81225 -9.55450 -9.38267 -8.06617 -5.42021 -0.24641 0.18466 1.36414 1.40710 1.47521 1.52435 1.81958 1.94817 2.46033 2.65729 3.14064 3.24470 3.35412 3.46361 3.72037 3.80778 3.94528 4.01446 4.01743 4.06606 4.11202 4.18095 4.22595 4.28070 4.36659 4.40682 4.48373 4.53171 4.63658 4.76630 4.79319 4.86318 4.88754 5.00473 5.02483 5.08370 5.13757 5.41243 5.44858 5.69433 6.16016 6.16650 6.28829 6.71623 6.89675 7.00052 7.03920 7.75245 7.96199 9.14614 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003232 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.735393 B = 8660.168744 C = 8946.314765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.321 6.321 4 C 0.344 3.656 5 N -0.551 5.551 6 C 0.160 3.840 7 C -0.193 4.193 8 C -0.016 4.016 9 C -0.221 4.221 10 C 0.564 3.436 11 O -0.573 6.573 12 N -0.590 5.590 13 C 0.093 3.907 14 C 0.065 3.935 15 O -0.588 6.588 16 C 0.125 3.875 17 C 0.152 3.848 18 N -0.755 5.755 19 C -0.240 4.240 20 H 0.056 0.944 21 C -0.060 4.060 22 N -0.981 5.981 23 Si 0.956 3.044 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.249 1.249 27 H 0.108 0.892 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.205 0.795 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.034 0.966 39 H 0.394 0.606 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.037 0.963 44 H 0.367 0.633 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -31.263 -12.664 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.228 6.228 4 C 0.166 3.834 5 N -0.275 5.275 6 C 0.004 3.996 7 C -0.213 4.213 8 C -0.042 4.042 9 C -0.228 4.228 10 C 0.353 3.647 11 O -0.452 6.452 12 N -0.321 5.321 13 C -0.029 4.029 14 C -0.014 4.014 15 O -0.396 6.396 16 C 0.002 3.998 17 C 0.024 3.976 18 N -0.401 5.401 19 C -0.371 4.371 20 H 0.074 0.926 21 C -0.251 4.251 22 N -0.631 5.631 23 Si 0.782 3.218 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.174 1.174 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.222 0.778 33 H 0.205 0.795 34 H 0.180 0.820 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.244 0.756 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.023 0.977 43 H 0.055 0.945 44 H 0.200 0.800 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.573 -31.377 -11.630 34.102 hybrid contribution -1.031 1.009 -0.293 1.472 sum 5.542 -30.368 -11.923 33.092 Atomic orbital electron populations 1.21847 0.91973 1.04281 1.02677 1.22837 0.95802 0.79656 1.02818 1.86326 1.17235 1.32613 1.86641 1.19808 0.84467 0.88859 0.90301 1.67526 1.08036 1.31395 1.20592 1.23447 0.88255 0.99642 0.88289 1.22376 1.03465 0.91366 1.04074 1.21897 0.89312 1.02214 0.90734 1.19805 0.95585 0.91049 1.16329 1.18452 0.82899 0.82506 0.80855 1.90790 1.36976 1.78189 1.39214 1.47696 1.42127 1.17727 1.24546 1.22248 0.91611 1.04150 0.84861 1.22636 0.91871 0.90805 0.96096 1.86509 1.55066 1.44616 1.53430 1.21366 0.93733 0.83151 1.01579 1.20946 0.94452 0.85412 0.96742 1.42527 1.20338 1.10941 1.66331 1.18995 1.01640 0.90507 1.25976 0.92590 1.25513 1.02799 0.95367 1.01467 1.69876 1.40163 1.03915 1.49121 0.85401 0.79802 0.77291 0.79311 1.20763 1.21362 1.17390 0.87366 0.92930 0.92137 0.90482 0.91493 0.77816 0.79543 0.81973 0.88644 0.86159 0.89338 0.94728 0.75630 0.88022 0.92341 0.97689 0.94459 0.79995 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.06 1.27 6.03 71.98 0.43 1.70 16 3 O -0.32 -9.20 9.36 -85.66 -0.80 -10.00 16 4 C 0.34 8.79 7.50 85.13 0.64 9.43 16 5 N -0.55 -10.69 9.21 -307.98 -2.84 -13.52 16 6 C 0.16 1.77 11.17 84.71 0.95 2.72 16 7 C -0.19 -1.82 10.09 22.32 0.23 -1.59 16 8 C -0.02 -0.26 7.63 22.72 0.17 -0.09 16 9 C -0.22 -5.65 4.92 -19.91 -0.10 -5.75 16 10 C 0.56 19.14 6.81 86.69 0.59 19.73 16 11 O -0.57 -25.48 16.37 -2.35 -0.04 -25.52 16 12 N -0.59 -17.67 2.46 -825.60 -2.03 -19.70 16 13 C 0.09 1.85 5.71 86.38 0.49 2.35 16 14 C 0.06 1.09 7.39 71.98 0.53 1.62 16 15 O -0.59 -11.99 12.05 -148.98 -1.79 -13.79 16 16 C 0.13 4.57 5.38 86.38 0.46 5.04 16 17 C 0.15 6.61 6.58 86.38 0.57 7.17 16 18 N -0.76 -39.00 5.41 -343.46 -1.86 -40.86 16 19 C -0.24 -14.69 10.47 84.03 0.88 -13.81 16 20 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 21 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.98 -64.97 13.97 21.65 0.30 -64.67 16 23 Si 0.96 47.72 27.74 68.60 1.90 49.62 16 24 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 31 H 0.07 1.29 8.10 -2.38 -0.02 1.27 16 32 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 34 H 0.16 2.16 7.61 -2.91 -0.02 2.14 16 35 H 0.10 1.88 8.11 -2.39 -0.02 1.87 16 36 H 0.12 1.72 4.43 -2.38 -0.01 1.71 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.39 4.54 9.12 -74.06 -0.68 3.87 16 40 H 0.10 3.50 6.68 -2.39 -0.02 3.48 16 41 H 0.06 2.42 7.35 -2.39 -0.02 2.40 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.37 18.05 5.53 -92.71 -0.51 17.54 16 45 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -89.96 377.25 -0.33 -90.29 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.23 Total: 24.66 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 7.05 Total: 23.50 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -6.42 Total: -138.75 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.63 Total: -49.31 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.90 Total: 49.62 kcal Total: -89.96 -0.33 -90.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754896658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.523 kcal (2) G-P(sol) polarization free energy of solvation -89.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds