Wall clock time and date at job start Tue Mar 31 2020 14:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47589 * 2 1 4 4 C 1.35732 * 116.99734 * 179.97438 * 3 2 1 5 5 C 1.41866 * 126.78212 * 180.29932 * 4 3 2 6 6 C 1.36666 * 103.80744 * 180.11762 * 5 4 3 7 7 C 1.47540 * 126.87435 * 179.87215 * 6 5 4 8 8 O 1.21580 * 120.00317 * 359.72147 * 7 6 5 9 9 N 1.34779 * 119.99621 * 179.71049 * 7 6 5 10 10 C 1.47424 * 125.65227 * 4.69923 * 9 7 6 11 11 C 1.54901 * 104.83391 * 204.14649 * 10 9 7 12 12 C 1.55160 * 101.57998 * 322.98573 * 11 10 9 13 13 C 1.47029 * 125.64540 * 184.71498 * 9 7 6 14 14 H 1.08995 * 110.01082 * 59.43751 * 13 9 7 15 15 C 1.52992 * 109.88377 * 298.34160 * 13 9 7 16 16 N 1.46503 * 109.47107 * 175.48361 * 15 13 9 17 17 C 1.46493 * 120.00002 * 267.35108 * 16 15 13 18 18 C 1.36938 * 119.99940 * 87.35733 * 16 15 13 19 19 H 1.08004 * 119.99561 * 3.56033 * 18 16 15 20 20 C 1.38806 * 120.00304 * 183.56706 * 18 16 15 21 21 N 1.31623 * 119.99631 * 352.49512 * 20 18 16 22 22 Si 1.86794 * 120.00285 * 172.76782 * 20 18 16 23 23 H 1.48503 * 109.46958 * 90.00109 * 22 20 18 24 24 H 1.48500 * 109.47368 * 210.00093 * 22 20 18 25 25 H 1.48493 * 109.47395 * 330.00109 * 22 20 18 26 26 O 1.34657 * 106.24258 * 359.62195 * 6 5 4 27 27 N 1.20876 * 111.63340 * 0.25484 * 26 6 5 28 28 H 1.08992 * 109.47670 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46974 * 300.00541 * 1 2 3 30 30 H 1.09004 * 109.46734 * 59.99676 * 1 2 3 31 31 H 1.09004 * 109.47137 * 239.99815 * 2 1 3 32 32 H 1.08998 * 109.47141 * 120.00417 * 2 1 3 33 33 H 1.07997 * 128.09128 * 0.02562 * 5 4 3 34 34 H 1.08996 * 110.36631 * 85.30164 * 10 9 7 35 35 H 1.08999 * 110.45361 * 323.03131 * 10 9 7 36 36 H 1.09005 * 111.00687 * 204.91573 * 11 10 9 37 37 H 1.09001 * 111.00996 * 81.06159 * 11 10 9 38 38 H 1.08996 * 110.72242 * 277.13806 * 12 11 10 39 39 H 1.09001 * 110.71545 * 153.86710 * 12 11 10 40 40 H 1.09007 * 109.47326 * 55.48189 * 15 13 9 41 41 H 1.09005 * 109.47445 * 295.48760 * 15 13 9 42 42 H 1.09003 * 109.47434 * 242.10785 * 17 16 15 43 43 H 1.09001 * 109.47279 * 2.10887 * 17 16 15 44 44 H 1.08998 * 109.46980 * 122.11096 * 17 16 15 45 45 H 0.97000 * 119.99675 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5249 0.0005 5 6 4.0455 2.7625 0.0066 6 6 5.3627 2.3984 0.0017 7 6 6.5305 3.3001 0.0021 8 8 6.3682 4.5050 0.0021 9 7 7.7772 2.7880 0.0027 10 6 8.1185 1.3571 -0.0951 11 6 9.5195 1.2382 0.5548 12 6 10.1916 2.5570 0.0895 13 6 9.0222 3.5639 0.1014 14 1 9.0335 4.1343 1.0300 15 6 9.1402 4.5124 -1.0932 16 7 10.3268 5.3562 -0.9314 17 6 10.2116 6.6663 -0.2860 18 6 11.5437 4.9204 -1.3835 19 1 11.6189 3.9806 -1.9104 20 6 12.6805 5.6863 -1.1645 21 7 12.5714 6.8954 -0.6559 22 14 14.3643 5.0040 -1.5986 23 1 14.6964 5.3609 -3.0013 24 1 15.3831 5.5826 -0.6862 25 1 14.3521 3.5262 -1.4534 26 8 5.3813 1.0519 0.0021 27 7 4.2639 0.5909 0.0015 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.6296 3.7592 0.0121 34 1 8.1570 1.0469 -1.1393 35 1 7.3939 0.7544 0.4524 36 1 10.0557 0.3701 0.1715 37 1 9.4442 1.2003 1.6416 38 1 10.5975 2.4491 -0.9163 39 1 10.9695 2.8612 0.7898 40 1 8.2516 5.1415 -1.1469 41 1 9.2299 3.9314 -2.0111 42 1 10.4919 7.4462 -0.9941 43 1 9.1826 6.8225 0.0379 44 1 10.8744 6.7050 0.5784 45 1 13.3658 7.4304 -0.5025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755195917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:06 Heat of formation + Delta-G solvation = 36.324230 kcal Electronic energy + Delta-G solvation = -27816.911025 eV Core-core repulsion = 23840.258568 eV Total energy + Delta-G solvation = -3976.652457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.15479 -40.00411 -39.28678 -37.49563 -35.34472 -33.74695 -32.52000 -31.61524 -31.42792 -31.03682 -28.97469 -25.90540 -25.45167 -24.82379 -23.74074 -23.49081 -21.97830 -21.24843 -20.76086 -19.69745 -18.18306 -17.97946 -17.15201 -16.94144 -16.32459 -16.20683 -15.90564 -15.25693 -14.77011 -14.65213 -14.29558 -13.96319 -13.64864 -13.45919 -13.32622 -13.12067 -13.06103 -12.78560 -12.58463 -12.28451 -12.13820 -11.82471 -11.55467 -11.53349 -11.18297 -10.94628 -10.88325 -10.73577 -10.51017 -10.33754 -10.18844 -10.07207 -10.01778 -9.71696 -9.62635 -9.56702 -8.65195 -8.41851 -6.86413 -5.60636 -3.02607 0.63634 1.88940 2.31469 2.44650 3.00263 3.19801 3.39679 3.45038 3.46990 3.85616 4.38706 4.47975 4.51767 4.54333 4.62041 4.75639 4.81394 4.96405 5.10958 5.16290 5.21723 5.32212 5.42701 5.46811 5.58077 5.60485 5.67186 5.72807 5.80819 5.96281 6.07585 6.26894 6.30812 6.56170 6.63914 6.66906 6.78240 6.92217 6.95115 7.50383 7.71569 7.76035 7.79007 7.99951 8.06950 8.41615 9.30390 9.93858 10.38219 11.38563 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.002614 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.748339 B =10710.003257 C =11352.216353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.208 3.792 5 C -0.161 4.161 6 C -0.043 4.043 7 C 0.609 3.391 8 O -0.503 6.503 9 N -0.594 5.594 10 C 0.093 3.907 11 C -0.137 4.137 12 C -0.107 4.107 13 C 0.114 3.886 14 H 0.075 0.925 15 C 0.146 3.854 16 N -0.605 5.605 17 C 0.168 3.832 18 C -0.241 4.241 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 O 0.115 5.885 27 N -0.397 5.397 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.190 0.810 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.039 0.961 43 H -0.006 1.006 44 H 0.045 0.955 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.372 -15.436 2.942 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.011 3.989 5 C -0.184 4.184 6 C -0.109 4.109 7 C 0.393 3.607 8 O -0.379 6.379 9 N -0.327 5.327 10 C -0.030 4.030 11 C -0.175 4.175 12 C -0.145 4.145 13 C 0.010 3.990 14 H 0.093 0.907 15 C 0.017 3.983 16 N -0.328 5.328 17 C 0.024 3.976 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.735 3.265 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 O 0.050 5.950 27 N -0.122 5.122 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.207 0.793 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.013 0.987 44 H 0.063 0.937 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.655 -15.706 2.969 24.566 hybrid contribution 0.730 0.113 -0.175 0.759 sum -17.925 -15.594 2.794 23.923 Atomic orbital electron populations 1.21797 0.92122 1.03225 1.03746 1.22835 0.95929 0.80555 1.02459 1.86221 1.13030 1.30257 1.89302 1.21815 0.85778 0.90512 1.00819 1.22172 0.90062 0.99280 1.06839 1.24230 0.96650 0.84061 1.05966 1.16078 0.79969 0.85801 0.78821 1.90908 1.84048 1.12516 1.50410 1.48661 1.05252 1.09082 1.69748 1.22539 0.97649 0.81377 1.01446 1.22848 0.94540 0.99453 1.00670 1.22596 0.96576 0.91865 1.03473 1.22909 0.80198 0.93311 1.02572 0.90682 1.21074 0.90794 0.92625 0.93789 1.44008 1.03859 1.16050 1.68923 1.21067 0.93318 0.85712 0.97456 1.19280 0.84163 1.03728 1.29876 0.90751 1.24866 0.97933 0.96423 1.01003 1.70252 1.27037 1.08932 1.50124 0.86246 0.84508 0.78181 0.77589 1.21725 1.21732 1.20666 1.85032 1.22504 1.18847 1.68589 1.73967 0.90637 1.22383 1.25234 0.89936 0.91306 0.91290 0.91520 0.91549 0.79281 0.90779 0.90182 0.89965 0.90962 0.89906 0.89644 0.92544 0.93926 0.94297 0.98713 0.93651 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.46 6.38 37.16 0.24 0.69 16 3 O -0.28 -3.09 10.21 -18.90 -0.19 -3.28 16 4 C 0.21 2.55 8.00 -16.72 -0.13 2.41 16 5 C -0.16 -1.98 10.97 -38.76 -0.43 -2.41 16 6 C -0.04 -0.57 7.07 -36.36 -0.26 -0.83 16 7 C 0.61 9.63 7.67 -12.47 -0.10 9.53 16 8 O -0.50 -9.53 15.72 5.29 0.08 -9.44 16 9 N -0.59 -9.01 3.06 -164.24 -0.50 -9.51 16 10 C 0.09 1.10 6.36 -2.53 -0.02 1.08 16 11 C -0.14 -1.60 7.08 -24.59 -0.17 -1.78 16 12 C -0.11 -1.70 5.46 -24.90 -0.14 -1.84 16 13 C 0.11 2.03 3.15 -66.95 -0.21 1.82 16 14 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.15 3.07 5.16 -4.04 -0.02 3.05 16 16 N -0.61 -15.10 2.90 -181.12 -0.52 -15.62 16 17 C 0.17 4.34 8.99 59.84 0.54 4.87 16 18 C -0.24 -6.33 8.63 -15.06 -0.13 -6.46 16 19 H 0.07 1.86 6.90 -52.48 -0.36 1.50 16 20 C -0.01 -0.17 5.44 -17.43 -0.09 -0.26 16 21 N -0.92 -26.41 9.46 55.49 0.53 -25.89 16 22 Si 0.90 21.43 29.56 -169.99 -5.02 16.40 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 O 0.11 1.43 8.47 15.51 0.13 1.57 16 27 N -0.40 -4.99 11.50 30.47 0.35 -4.64 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.84 6.01 -51.93 -0.31 0.53 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 1.24 6.31 -51.92 -0.33 0.91 16 41 H 0.04 0.88 7.95 -51.93 -0.41 0.47 16 42 H 0.04 1.08 7.18 -51.93 -0.37 0.71 16 43 H -0.01 -0.14 7.78 -51.93 -0.40 -0.54 16 44 H 0.04 1.24 6.90 -51.93 -0.36 0.88 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -30.71 366.23 -6.85 -37.56 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.68 Total: -2.11 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.54 Total: 9.44 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.15 Total: -55.66 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.02 Total: -11.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.71 -6.85 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755195917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.883 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds