Wall clock time and date at job start Tue Mar 31 2020 14:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35703 * 117.00013 * 2 1 4 4 C 1.41939 * 126.87858 * 180.30150 * 3 2 1 5 5 C 1.35274 * 103.96090 * 180.11467 * 4 3 2 6 6 C 1.50700 * 126.70972 * 179.87509 * 5 4 3 7 7 C 1.53002 * 109.46952 * 89.71512 * 6 5 4 8 8 C 1.50695 * 109.47045 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99945 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00289 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46664 * 34.99452 * 11 10 8 13 13 C 1.52998 * 109.47186 * 274.99992 * 11 10 8 14 14 C 1.52999 * 109.47461 * 154.99515 * 11 10 8 15 15 C 1.53946 * 113.84014 * 86.35319 * 14 11 10 16 16 N 1.47580 * 86.11645 * 90.74977 * 15 14 11 17 17 C 1.36940 * 134.49194 * 204.64076 * 16 15 14 18 18 H 1.08004 * 119.99910 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00130 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47395 * 89.99952 * 21 19 17 23 23 H 1.48496 * 109.47269 * 210.00118 * 21 19 17 24 24 H 1.48507 * 109.47337 * 329.99895 * 21 19 17 25 25 C 1.47585 * 91.01539 * 24.64210 * 16 15 14 26 26 O 1.34088 * 106.58152 * 359.61499 * 5 4 3 27 27 N 1.20918 * 111.71885 * 0.26381 * 26 5 4 28 28 H 1.09000 * 109.47142 * 300.00387 * 1 2 3 29 29 H 1.09001 * 109.47076 * 60.00134 * 1 2 3 30 30 H 1.08999 * 109.47610 * 180.02562 * 1 2 3 31 31 H 1.07997 * 128.02040 * 0.02872 * 4 3 2 32 32 H 1.08999 * 109.47100 * 329.71582 * 6 5 4 33 33 H 1.09000 * 109.46946 * 209.71010 * 6 5 4 34 34 H 1.08995 * 109.47273 * 59.99611 * 7 6 5 35 35 H 1.09000 * 109.47130 * 300.00279 * 7 6 5 36 36 H 0.97003 * 120.00723 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47692 * 179.97438 * 13 11 10 38 38 H 1.09007 * 109.46890 * 299.99834 * 13 11 10 39 39 H 1.09005 * 109.47387 * 59.99160 * 13 11 10 40 40 H 1.09002 * 112.94549 * 314.66779 * 14 11 10 41 41 H 1.08996 * 113.77105 * 205.05389 * 15 14 11 42 42 H 1.09002 * 113.76556 * 336.45321 * 15 14 11 43 43 H 0.96992 * 119.99795 * 179.97438 * 20 19 17 44 44 H 1.08996 * 113.76681 * 221.05446 * 25 16 15 45 45 H 1.08997 * 113.86988 * 89.67359 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 3.4434 1.4526 -0.0060 5 6 3.5397 2.8019 -0.0006 6 6 4.8089 3.6145 -0.0008 7 6 5.2381 3.8894 -1.4434 8 6 6.5076 4.7014 -1.4436 9 8 7.0185 5.0284 -0.3934 10 7 7.0747 5.0651 -2.6109 11 6 8.3086 5.8549 -2.6112 12 1 8.9326 5.5541 -1.7697 13 6 7.9634 7.3401 -2.4849 14 6 9.0663 5.6168 -3.9189 15 6 8.6233 6.5366 -5.0711 16 7 9.6744 7.4611 -4.6037 17 6 9.8761 8.8121 -4.6995 18 1 10.7544 9.2596 -4.2581 19 6 8.9517 9.6065 -5.3639 20 7 7.8811 9.0612 -5.9014 21 14 9.2265 11.4496 -5.4939 22 1 9.9984 11.7493 -6.7266 23 1 7.9146 12.1429 -5.5506 24 1 9.9851 11.9219 -4.3078 25 6 10.4209 6.3447 -3.9917 26 8 2.2851 3.2751 -0.0008 27 7 1.4700 2.3820 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.2446 0.7286 -0.0119 32 1 5.5948 3.0608 0.5129 33 1 4.6351 4.5599 0.5130 34 1 4.4522 4.4430 -1.9571 35 1 5.4118 2.9440 -1.9573 36 1 6.6660 4.8039 -3.4510 37 1 8.8814 7.9278 -2.4847 38 1 7.3393 7.6409 -3.3264 39 1 7.4235 7.5098 -1.5533 40 1 9.1189 4.5633 -4.1938 41 1 8.8114 6.1219 -6.0614 42 1 7.6121 6.9274 -4.9572 43 1 7.2351 9.6163 -6.3653 44 1 10.8450 6.5824 -3.0162 45 1 11.1378 5.8727 -4.6635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755376921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:13 Heat of formation + Delta-G solvation = 47.818219 kcal Electronic energy + Delta-G solvation = -26831.967121 eV Core-core repulsion = 22855.813081 eV Total energy + Delta-G solvation = -3976.154040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.15406 -39.86345 -39.14527 -38.38559 -35.02599 -34.34395 -33.09642 -32.16721 -30.90890 -29.40292 -27.94649 -27.57649 -25.31872 -24.90405 -23.90429 -23.63752 -21.63504 -21.18378 -20.05065 -18.54320 -18.17442 -17.92152 -17.04163 -16.82602 -16.66986 -15.85029 -15.75335 -15.62351 -15.29521 -14.87717 -14.63790 -14.12010 -13.99611 -13.70914 -13.34042 -13.10372 -12.61432 -12.57868 -12.49600 -12.21347 -12.20491 -11.78299 -11.60429 -11.21101 -11.15373 -11.08587 -10.98618 -10.75680 -10.57002 -10.35774 -9.96127 -9.84748 -9.63925 -9.62076 -9.48306 -9.33232 -8.74224 -8.67446 -6.83086 -5.77190 -3.08169 1.12294 1.98096 2.43828 2.79740 2.80835 3.38974 3.44624 3.44946 3.46020 3.92379 4.45877 4.48150 4.60963 4.65683 4.73275 4.76176 4.82285 5.01162 5.10245 5.15890 5.21601 5.30742 5.34005 5.39833 5.49261 5.58343 5.66136 5.78662 5.92624 6.09947 6.28422 6.41631 6.49181 6.63670 6.64343 6.72507 6.75195 7.02128 7.23748 7.27860 7.47302 7.61121 7.78831 7.96186 7.98355 8.42958 9.05281 9.71359 10.60531 11.39653 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.002100 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.249204 B =13328.823914 C =13748.338655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.235 4.235 5 C 0.005 3.995 6 C -0.026 4.026 7 C -0.140 4.140 8 C 0.514 3.486 9 O -0.547 6.547 10 N -0.717 5.717 11 C 0.173 3.827 12 H 0.076 0.924 13 C -0.148 4.148 14 C -0.154 4.154 15 C 0.163 3.837 16 N -0.605 5.605 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.126 3.874 26 O 0.101 5.899 27 N -0.411 5.411 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.179 0.821 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.399 0.601 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.080 0.920 43 H 0.252 0.748 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 -17.974 9.873 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.256 4.256 5 C -0.059 4.059 6 C -0.064 4.064 7 C -0.181 4.181 8 C 0.299 3.701 9 O -0.425 6.425 10 N -0.367 5.367 11 C 0.069 3.931 12 H 0.094 0.906 13 C -0.206 4.206 14 C -0.174 4.174 15 C 0.038 3.962 16 N -0.332 5.332 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.001 4.001 26 O 0.041 5.959 27 N -0.138 5.138 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.196 0.804 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.441 -17.274 10.535 23.244 hybrid contribution 0.352 0.372 -0.862 1.002 sum -11.090 -16.902 9.674 22.411 Atomic orbital electron populations 1.23061 0.76867 1.04046 1.02379 1.86185 1.22565 1.20999 1.89412 1.22043 0.90993 0.85700 1.00367 1.21814 0.94245 0.95736 1.13840 1.24418 0.88317 0.93239 0.99897 1.19957 0.88420 1.00589 0.97464 1.21670 0.96990 1.01839 0.97587 1.20319 0.85568 0.80047 0.84144 1.90703 1.64297 1.56278 1.31239 1.46187 1.27561 1.54812 1.08140 1.20637 0.83694 0.91993 0.96760 0.90573 1.22148 1.03942 0.94113 1.00427 1.23509 0.98724 0.98197 0.97000 1.22364 0.96057 0.86176 0.91619 1.46012 1.22609 1.00841 1.63711 1.18966 1.05443 0.80351 1.29783 0.90443 1.24709 0.97292 0.97781 1.00447 1.69789 1.11963 1.33955 1.41053 0.86196 0.76922 0.85354 0.77765 1.21814 1.21714 1.20671 1.22529 0.92658 0.88411 0.96492 1.84824 1.12314 1.29956 1.68839 1.74152 1.15749 0.96707 1.27211 0.92292 0.92214 0.87683 0.80380 0.87275 0.88021 0.88137 0.88352 0.76691 0.89701 0.90662 0.95191 0.91742 0.95930 0.90240 0.93770 0.93694 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.30 16 2 O -0.29 -2.86 10.57 -18.81 -0.20 -3.06 16 3 C 0.21 2.26 8.01 -16.65 -0.13 2.13 16 4 C -0.23 -2.12 11.11 -39.22 -0.44 -2.56 16 5 C 0.00 0.05 6.73 -35.36 -0.24 -0.19 16 6 C -0.03 -0.22 5.07 -27.88 -0.14 -0.36 16 7 C -0.14 -1.20 5.68 -27.88 -0.16 -1.36 16 8 C 0.51 6.62 7.79 -10.99 -0.09 6.54 16 9 O -0.55 -9.03 15.64 5.56 0.09 -8.94 16 10 N -0.72 -9.62 5.08 -53.81 -0.27 -9.89 16 11 C 0.17 2.87 2.69 -67.93 -0.18 2.69 16 12 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 13 C -0.15 -2.95 8.20 37.16 0.30 -2.65 16 14 C -0.15 -2.63 4.07 -89.69 -0.36 -2.99 16 15 C 0.16 3.49 6.52 -2.97 -0.02 3.47 16 16 N -0.61 -14.33 2.18 -177.91 -0.39 -14.72 16 17 C -0.22 -5.78 9.81 -15.06 -0.15 -5.93 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -25.87 11.38 55.49 0.63 -25.24 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.41 8.13 -2.97 -0.02 2.39 16 26 O 0.10 1.13 11.19 17.05 0.19 1.32 16 27 N -0.41 -4.90 11.54 30.39 0.35 -4.55 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 4.51 8.60 -40.82 -0.35 4.16 16 37 H 0.08 1.89 6.15 -51.93 -0.32 1.57 16 38 H 0.07 1.69 6.19 -51.93 -0.32 1.37 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.85 5.49 -51.93 -0.28 1.57 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -32.20 374.28 -6.33 -38.52 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.71 Total: 2.02 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.64 Total: 2.22 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.32 Total: -54.40 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.20 -6.33 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755376921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.343 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds