Wall clock time and date at job start Tue Mar 31 2020 14:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35703 * 117.00013 * 2 1 4 4 C 1.41939 * 126.87858 * 180.30150 * 3 2 1 5 5 C 1.35274 * 103.96090 * 180.11467 * 4 3 2 6 6 C 1.50700 * 126.70972 * 179.87509 * 5 4 3 7 7 C 1.53002 * 109.46952 * 89.71512 * 6 5 4 8 8 C 1.50695 * 109.47045 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99945 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00289 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46664 * 34.99452 * 11 10 8 13 13 C 1.52998 * 109.47186 * 274.99992 * 11 10 8 14 14 C 1.52999 * 109.47461 * 154.99515 * 11 10 8 15 15 C 1.53946 * 113.84014 * 86.35319 * 14 11 10 16 16 N 1.47580 * 86.11645 * 90.74977 * 15 14 11 17 17 C 1.36940 * 134.49194 * 204.64076 * 16 15 14 18 18 H 1.08004 * 119.99910 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00130 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47395 * 89.99952 * 21 19 17 23 23 H 1.48496 * 109.47269 * 210.00118 * 21 19 17 24 24 H 1.48507 * 109.47337 * 329.99895 * 21 19 17 25 25 C 1.47585 * 91.01539 * 24.64210 * 16 15 14 26 26 O 1.34088 * 106.58152 * 359.61499 * 5 4 3 27 27 N 1.20918 * 111.71885 * 0.26381 * 26 5 4 28 28 H 1.09000 * 109.47142 * 300.00387 * 1 2 3 29 29 H 1.09001 * 109.47076 * 60.00134 * 1 2 3 30 30 H 1.08999 * 109.47610 * 180.02562 * 1 2 3 31 31 H 1.07997 * 128.02040 * 0.02872 * 4 3 2 32 32 H 1.08999 * 109.47100 * 329.71582 * 6 5 4 33 33 H 1.09000 * 109.46946 * 209.71010 * 6 5 4 34 34 H 1.08995 * 109.47273 * 59.99611 * 7 6 5 35 35 H 1.09000 * 109.47130 * 300.00279 * 7 6 5 36 36 H 0.97003 * 120.00723 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47692 * 179.97438 * 13 11 10 38 38 H 1.09007 * 109.46890 * 299.99834 * 13 11 10 39 39 H 1.09005 * 109.47387 * 59.99160 * 13 11 10 40 40 H 1.09002 * 112.94549 * 314.66779 * 14 11 10 41 41 H 1.08996 * 113.77105 * 205.05389 * 15 14 11 42 42 H 1.09002 * 113.76556 * 336.45321 * 15 14 11 43 43 H 0.96992 * 119.99795 * 179.97438 * 20 19 17 44 44 H 1.08996 * 113.76681 * 221.05446 * 25 16 15 45 45 H 1.08997 * 113.86988 * 89.67359 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 3.4434 1.4526 -0.0060 5 6 3.5397 2.8019 -0.0006 6 6 4.8089 3.6145 -0.0008 7 6 5.2381 3.8894 -1.4434 8 6 6.5076 4.7014 -1.4436 9 8 7.0185 5.0284 -0.3934 10 7 7.0747 5.0651 -2.6109 11 6 8.3086 5.8549 -2.6112 12 1 8.9326 5.5541 -1.7697 13 6 7.9634 7.3401 -2.4849 14 6 9.0663 5.6168 -3.9189 15 6 8.6233 6.5366 -5.0711 16 7 9.6744 7.4611 -4.6037 17 6 9.8761 8.8121 -4.6995 18 1 10.7544 9.2596 -4.2581 19 6 8.9517 9.6065 -5.3639 20 7 7.8811 9.0612 -5.9014 21 14 9.2265 11.4496 -5.4939 22 1 9.9984 11.7493 -6.7266 23 1 7.9146 12.1429 -5.5506 24 1 9.9851 11.9219 -4.3078 25 6 10.4209 6.3447 -3.9917 26 8 2.2851 3.2751 -0.0008 27 7 1.4700 2.3820 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.2446 0.7286 -0.0119 32 1 5.5948 3.0608 0.5129 33 1 4.6351 4.5599 0.5130 34 1 4.4522 4.4430 -1.9571 35 1 5.4118 2.9440 -1.9573 36 1 6.6660 4.8039 -3.4510 37 1 8.8814 7.9278 -2.4847 38 1 7.3393 7.6409 -3.3264 39 1 7.4235 7.5098 -1.5533 40 1 9.1189 4.5633 -4.1938 41 1 8.8114 6.1219 -6.0614 42 1 7.6121 6.9274 -4.9572 43 1 7.2351 9.6163 -6.3653 44 1 10.8450 6.5824 -3.0162 45 1 11.1378 5.8727 -4.6635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755376921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:12 Heat of formation + Delta-G solvation = 25.576807 kcal Electronic energy + Delta-G solvation = -26832.931581 eV Core-core repulsion = 22855.813081 eV Total energy + Delta-G solvation = -3977.118500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.92689 -41.10710 -39.85304 -39.79774 -35.98252 -35.50382 -34.07984 -33.84117 -31.92297 -30.65099 -29.40432 -28.52848 -26.58343 -26.33123 -25.41760 -24.41637 -23.06634 -22.06123 -21.14251 -19.95948 -19.00654 -18.71220 -18.63778 -17.79844 -17.67117 -17.04752 -16.81778 -16.57170 -16.46985 -16.06505 -15.94901 -15.64993 -14.96284 -14.87052 -14.47604 -14.34110 -14.05737 -13.51117 -13.38430 -13.21930 -13.10242 -12.91946 -12.87918 -12.83894 -12.73279 -12.49259 -12.39245 -12.34965 -11.99451 -11.86728 -11.65396 -11.33583 -11.08232 -10.84939 -10.70234 -10.46870 -10.27496 -9.91820 -8.74196 -7.82161 -5.11285 0.39141 1.23787 1.47196 1.48127 1.55462 1.77262 1.78522 2.06972 2.43889 2.52392 3.20336 3.38936 3.53560 3.71520 3.82685 3.90763 3.94368 4.00240 4.13555 4.23551 4.26588 4.29051 4.46202 4.49965 4.60896 4.63449 4.70326 4.75212 4.87890 4.92585 4.94570 5.01368 5.08463 5.13919 5.16995 5.23154 5.35419 5.59128 5.64578 5.76108 5.84734 5.95268 6.05615 6.73122 7.03101 7.20992 7.40168 7.71105 8.67342 9.33925 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.002100 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.249204 B =13328.823914 C =13748.338655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.194 3.806 4 C -0.230 4.230 5 C 0.010 3.990 6 C -0.020 4.020 7 C -0.129 4.129 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.713 5.713 11 C 0.183 3.817 12 H 0.078 0.922 13 C -0.132 4.132 14 C -0.121 4.121 15 C 0.161 3.839 16 N -0.631 5.631 17 C -0.218 4.218 18 H 0.075 0.925 19 C -0.060 4.060 20 N -0.945 5.945 21 Si 0.961 3.039 22 H -0.291 1.291 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.122 3.878 26 O 0.086 5.914 27 N -0.434 5.434 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.135 0.865 31 H 0.204 0.796 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.412 0.588 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.014 0.986 42 H 0.056 0.944 43 H 0.245 0.755 44 H 0.051 0.949 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 -20.147 10.294 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.202 6.202 3 C -0.003 4.003 4 C -0.251 4.251 5 C -0.053 4.053 6 C -0.058 4.058 7 C -0.169 4.169 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.364 5.364 11 C 0.079 3.921 12 H 0.096 0.904 13 C -0.190 4.190 14 C -0.141 4.141 15 C 0.036 3.964 16 N -0.358 5.358 17 C -0.347 4.347 18 H 0.093 0.907 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.792 3.208 22 H -0.219 1.219 23 H -0.224 1.224 24 H -0.199 1.199 25 C -0.004 4.004 26 O 0.027 5.973 27 N -0.163 5.163 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.221 0.779 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.122 0.878 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.137 -19.478 10.956 24.969 hybrid contribution 0.273 1.008 -0.939 1.404 sum -10.864 -18.470 10.017 23.654 Atomic orbital electron populations 1.23289 0.75485 1.05948 1.02086 1.86179 1.24038 1.20668 1.89314 1.22415 0.91952 0.85793 1.00190 1.22160 0.94070 0.96029 1.12879 1.24516 0.87804 0.93389 0.99586 1.19925 0.88236 1.00239 0.97408 1.21649 0.94595 1.02529 0.98154 1.21009 0.86235 0.79458 0.83086 1.90695 1.65551 1.57690 1.32478 1.46047 1.26710 1.54331 1.09282 1.20303 0.85137 0.90156 0.96548 0.90426 1.21919 1.01790 0.96458 0.98843 1.23224 0.96516 0.99329 0.95032 1.22310 0.94527 0.86811 0.92786 1.46316 1.24421 1.00912 1.64154 1.19220 1.04795 0.82277 1.28388 0.90703 1.25344 0.97587 1.01084 1.01322 1.69940 1.12625 1.34587 1.42270 0.85324 0.76291 0.81539 0.77689 1.21890 1.22444 1.19885 1.22751 0.93872 0.87046 0.96683 1.84789 1.13084 1.30136 1.69304 1.74142 1.16498 0.97279 1.28370 0.92560 0.92528 0.84726 0.77885 0.86266 0.88961 0.87108 0.85277 0.75175 0.92437 0.93527 0.95554 0.87760 0.96786 0.92564 0.94627 0.93027 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.73 113.37 1.22 1.55 16 2 O -0.30 -5.53 10.57 -90.24 -0.95 -6.48 16 3 C 0.19 3.99 8.01 85.79 0.69 4.68 16 4 C -0.23 -3.62 11.11 22.50 0.25 -3.37 16 5 C 0.01 0.17 6.73 25.00 0.17 0.34 16 6 C -0.02 -0.28 5.07 29.85 0.15 -0.13 16 7 C -0.13 -1.82 5.68 29.85 0.17 -1.66 16 8 C 0.51 12.07 7.79 87.66 0.68 12.76 16 9 O -0.58 -18.35 15.64 -3.02 -0.05 -18.40 16 10 N -0.71 -17.48 5.08 -442.54 -2.25 -19.72 16 11 C 0.18 5.80 2.69 44.99 0.12 5.92 16 12 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 13 C -0.13 -5.28 8.20 71.98 0.59 -4.69 16 14 C -0.12 -3.85 4.07 -10.13 -0.04 -3.89 16 15 C 0.16 6.81 6.52 86.48 0.56 7.37 16 16 N -0.63 -29.79 2.18 -716.78 -1.56 -31.35 16 17 C -0.22 -11.68 9.81 84.03 0.82 -10.85 16 18 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 20 N -0.94 -54.35 11.38 21.65 0.25 -54.10 16 21 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.12 4.45 8.13 86.48 0.70 5.16 16 26 O 0.09 1.84 11.19 71.19 0.80 2.64 16 27 N -0.43 -10.06 11.54 -172.58 -1.99 -12.06 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.12 1.53 8.10 -2.39 -0.02 1.51 16 33 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.41 8.17 8.60 -92.71 -0.80 7.37 16 37 H 0.06 2.59 6.15 -2.39 -0.01 2.58 16 38 H 0.05 2.13 6.19 -2.38 -0.01 2.12 16 39 H 0.03 1.02 8.14 -2.38 -0.02 1.01 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 2.66 5.49 -2.39 -0.01 2.64 16 43 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -71.28 374.28 3.04 -68.24 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.21 Total: 13.52 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.56 Total: 10.33 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -5.55 Total: -117.23 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.20 Total: -22.24 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.28 3.04 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755376921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.813 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds