Wall clock time and date at job start Tue Mar 31 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 O 1.42897 * 109.47317 * 120.00266 * 2 1 3 5 5 C 1.35664 * 117.00551 * 150.00153 * 4 2 1 6 6 C 1.39284 * 119.61970 * 180.02562 * 5 4 2 7 7 C 1.38332 * 119.30487 * 179.97438 * 6 5 4 8 8 C 1.38782 * 118.56089 * 0.02562 * 7 6 5 9 9 C 1.39124 * 119.18571 * 359.97438 * 8 7 6 10 10 C 1.48161 * 119.68813 * 179.97438 * 9 8 7 11 11 O 1.21511 * 119.99766 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99923 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47226 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47434 * 64.99688 * 14 13 12 16 16 C 1.52997 * 109.47114 * 184.99495 * 14 13 12 17 17 O 1.42903 * 109.47059 * 55.00009 * 16 14 13 18 18 N 1.46498 * 109.46963 * 304.99288 * 14 13 12 19 19 C 1.36943 * 119.99752 * 154.72381 * 18 14 13 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 14 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 14 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48496 * 109.47166 * 329.99846 * 23 21 19 27 27 N 1.31907 * 119.61687 * 0.24777 * 5 4 2 28 28 H 1.09002 * 109.47253 * 300.00177 * 1 2 3 29 29 H 1.09002 * 109.47009 * 60.00189 * 1 2 3 30 30 H 1.08994 * 109.47383 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47253 * 239.99823 * 2 1 3 32 32 H 1.09002 * 109.46975 * 299.99831 * 3 2 1 33 33 H 1.08991 * 109.47402 * 60.00127 * 3 2 1 34 34 H 1.09008 * 109.47151 * 180.02562 * 3 2 1 35 35 H 1.08002 * 120.34915 * 0.02562 * 6 5 4 36 36 H 1.07995 * 120.71911 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.40944 * 180.02562 * 8 7 6 38 38 H 0.96998 * 119.99957 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47176 * 59.99567 * 13 12 10 40 40 H 1.09008 * 109.46559 * 299.99697 * 13 12 10 41 41 H 1.08997 * 109.47241 * 175.00015 * 16 14 13 42 42 H 1.09002 * 109.47280 * 295.00109 * 16 14 13 43 43 H 0.96700 * 113.99965 * 180.02562 * 17 16 14 44 44 H 0.97001 * 120.00384 * 335.00737 * 18 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1986 -1.3129 1.0653 6 6 3.7140 -1.9877 2.1694 7 6 4.9301 -2.6378 2.0585 8 6 5.5977 -2.5935 0.8427 9 6 5.0262 -1.9013 -0.2203 10 6 5.7296 -1.8464 -1.5231 11 8 6.8002 -2.4047 -1.6595 12 7 5.1815 -1.1781 -2.5572 13 6 5.8767 -1.1242 -3.8456 14 6 5.0464 -0.3096 -4.8395 15 1 4.9862 0.7247 -4.5009 16 6 5.7095 -0.3572 -6.2175 17 8 5.8941 -1.7187 -6.6105 18 7 3.6974 -0.8742 -4.9270 19 6 2.6472 -0.0824 -5.3085 20 1 2.8143 0.9571 -5.5492 21 6 1.3681 -0.6158 -5.3858 22 7 1.1645 -1.8826 -5.0919 23 14 -0.0643 0.4640 -5.9069 24 1 -0.2186 0.4036 -7.3826 25 1 -1.3100 -0.0193 -5.2588 26 1 0.1968 1.8661 -5.4934 27 7 3.8584 -1.2846 -0.0766 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 3.1697 -2.0039 3.1020 36 1 5.3511 -3.1675 2.9002 37 1 6.5488 -3.0909 0.7228 38 1 4.3263 -0.7334 -2.4486 39 1 6.0121 -2.1359 -4.2280 40 1 6.8504 -0.6523 -3.7135 41 1 5.0734 0.1477 -6.9445 42 1 6.6772 0.1424 -6.1726 43 1 6.3110 -1.8250 -7.4765 44 1 3.5473 -1.8078 -4.7107 45 1 0.2707 -2.2555 -5.1463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755643534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:58 Heat of formation + Delta-G solvation = -102.702138 kcal Electronic energy + Delta-G solvation = -28237.011007 eV Core-core repulsion = 24254.329915 eV Total energy + Delta-G solvation = -3982.681093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93079 -40.59299 -39.10181 -38.50291 -36.41527 -35.26722 -34.27574 -33.74869 -32.96844 -31.36784 -30.06350 -28.18909 -27.19536 -25.73503 -25.25662 -24.34555 -22.23150 -21.72169 -21.62229 -19.77397 -19.25766 -18.57991 -18.14950 -17.37533 -17.01315 -16.84502 -16.75234 -16.55518 -16.18460 -15.72405 -15.46175 -15.34465 -15.00927 -14.81954 -14.62976 -14.48233 -14.17531 -14.00486 -13.65775 -13.28544 -13.19340 -13.08252 -13.05453 -12.87634 -12.73267 -12.68000 -12.25142 -11.92990 -11.90508 -11.79366 -11.72675 -11.53085 -10.99239 -10.98110 -10.72366 -10.57372 -10.10094 -9.57062 -8.99493 -7.88002 -5.17472 -0.39167 0.26596 1.48526 1.49777 1.57772 1.67909 1.98198 2.11781 2.57892 2.80932 2.97521 3.44093 3.61096 3.82588 3.88645 3.90006 3.96332 4.01014 4.02778 4.03394 4.22326 4.29826 4.42306 4.49208 4.54628 4.59743 4.68224 4.80869 4.81871 4.83539 4.89857 4.99009 4.99694 5.10730 5.17843 5.20132 5.23181 5.42095 5.42422 5.55081 6.17872 6.29325 6.40248 6.71511 7.06887 7.10395 7.37661 8.09167 8.35384 9.34642 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.005389 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.359826 B = 5194.131044 C = 7659.555769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.078 3.922 3 C -0.157 4.157 4 O -0.304 6.304 5 C 0.301 3.699 6 C -0.160 4.160 7 C -0.032 4.032 8 C -0.150 4.150 9 C 0.093 3.907 10 C 0.561 3.439 11 O -0.569 6.569 12 N -0.693 5.693 13 C 0.126 3.874 14 C 0.161 3.839 15 H 0.076 0.924 16 C 0.067 3.933 17 O -0.584 6.584 18 N -0.721 5.721 19 C -0.235 4.235 20 H 0.080 0.920 21 C -0.067 4.067 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.294 1.294 25 H -0.299 1.299 26 H -0.265 1.265 27 N -0.532 5.532 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.177 0.823 36 H 0.196 0.804 37 H 0.157 0.843 38 H 0.414 0.586 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.386 0.614 44 H 0.371 0.629 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 4.120 14.104 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 C -0.215 4.215 4 O -0.212 6.212 5 C 0.119 3.881 6 C -0.180 4.180 7 C -0.057 4.057 8 C -0.172 4.172 9 C -0.043 4.043 10 C 0.346 3.654 11 O -0.449 6.449 12 N -0.342 5.342 13 C 0.001 3.999 14 C 0.051 3.949 15 H 0.094 0.906 16 C -0.014 4.014 17 O -0.390 6.390 18 N -0.361 5.361 19 C -0.367 4.367 20 H 0.098 0.902 21 C -0.260 4.260 22 N -0.615 5.615 23 Si 0.794 3.206 24 H -0.222 1.222 25 H -0.226 1.226 26 H -0.190 1.190 27 N -0.259 5.259 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.194 0.806 36 H 0.213 0.787 37 H 0.174 0.826 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.202 0.798 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.414 4.307 13.981 15.974 hybrid contribution -0.863 -0.083 -0.943 1.281 sum 5.550 4.225 13.039 14.787 Atomic orbital electron populations 1.21849 0.91600 1.02878 1.03730 1.22369 0.95549 0.93151 0.86711 1.22112 1.01061 0.94855 1.03429 1.86249 1.31439 1.64643 1.38865 1.20222 0.86518 0.91394 0.89968 1.21726 0.97958 0.99376 0.98953 1.21909 0.91875 0.94412 0.97530 1.22192 1.02525 0.99676 0.92789 1.20725 0.91184 0.97627 0.94737 1.18265 0.84505 0.78645 0.83960 1.90710 1.22682 1.47404 1.84073 1.45916 1.24960 1.52458 1.10894 1.21521 0.95399 1.01015 0.81921 1.20842 0.84937 0.96736 0.92341 0.90586 1.22844 0.98598 0.82837 0.97118 1.86526 1.84788 1.26765 1.40955 1.42444 1.02156 1.10505 1.80981 1.19575 0.87292 0.93550 1.36243 0.90209 1.25432 0.99917 0.97090 1.03538 1.69858 1.20979 1.13740 1.56892 0.85289 0.79373 0.78747 0.77239 1.22216 1.22581 1.18958 1.67029 1.09369 1.23167 1.26335 0.89844 0.90367 0.92633 0.91998 0.90665 0.90470 0.93371 0.80576 0.78676 0.82582 0.74935 0.92626 0.89858 0.94412 0.91484 0.76634 0.79753 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.56 71.98 0.69 -3.06 16 2 C 0.08 2.36 3.10 30.59 0.09 2.45 16 3 C -0.16 -4.14 9.53 71.98 0.69 -3.45 16 4 O -0.30 -8.80 9.76 -89.80 -0.88 -9.68 16 5 C 0.30 8.69 7.46 84.93 0.63 9.32 16 6 C -0.16 -3.24 10.05 22.54 0.23 -3.01 16 7 C -0.03 -0.56 10.16 22.42 0.23 -0.34 16 8 C -0.15 -3.75 9.63 22.61 0.22 -3.53 16 9 C 0.09 3.07 6.75 41.84 0.28 3.35 16 10 C 0.56 21.21 7.81 86.88 0.68 21.89 16 11 O -0.57 -23.21 16.32 -3.75 -0.06 -23.27 16 12 N -0.69 -26.54 5.38 -465.67 -2.50 -29.05 16 13 C 0.13 4.63 5.12 86.38 0.44 5.07 16 14 C 0.16 6.12 2.84 44.99 0.13 6.25 16 15 H 0.08 2.73 8.08 -2.39 -0.02 2.71 16 16 C 0.07 2.21 6.86 71.98 0.49 2.70 16 17 O -0.58 -20.39 12.64 -148.98 -1.88 -22.28 16 18 N -0.72 -35.07 4.51 -322.94 -1.46 -36.53 16 19 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 22 N -0.96 -58.32 13.06 21.65 0.28 -58.04 16 23 Si 0.96 44.66 29.55 68.60 2.03 46.69 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 27 N -0.53 -17.84 7.82 -298.20 -2.33 -20.17 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 2.33 6.98 -2.39 -0.02 2.32 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.16 3.61 7.63 -2.91 -0.02 3.59 16 38 H 0.41 16.85 7.46 -92.71 -0.69 16.15 16 39 H 0.06 2.32 7.39 -2.39 -0.02 2.30 16 40 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.39 9.39 9.12 -74.06 -0.68 8.71 16 44 H 0.37 20.63 7.80 -92.71 -0.72 19.91 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.48 384.65 -1.76 -73.24 By element: Atomic # 1 Polarization: 57.23 SS G_CDS: -1.06 Total: 56.17 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 6.10 Total: 22.90 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -6.01 Total: -143.79 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -2.82 Total: -55.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -71.48 -1.76 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755643534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.458 kcal (2) G-P(sol) polarization free energy of solvation -71.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds