Wall clock time and date at job start Tue Mar 31 2020 14:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47111 * 2 1 4 4 C 1.46495 * 120.00124 * 270.00154 * 3 2 1 5 5 C 1.50702 * 109.46869 * 269.99846 * 4 3 2 6 6 H 1.08000 * 120.00204 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99950 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00555 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99999 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46833 * 89.99632 * 9 7 5 11 11 H 1.48498 * 109.47218 * 209.99899 * 9 7 5 12 12 H 1.48494 * 109.47021 * 329.99958 * 9 7 5 13 13 C 1.34782 * 119.99556 * 90.00494 * 3 2 1 14 14 O 1.21282 * 119.99717 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99968 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46985 * 180.02562 * 15 13 3 17 17 C 1.34876 * 117.00476 * 180.02562 * 16 15 13 18 18 O 1.21614 * 119.99507 * 359.97438 * 17 16 15 19 19 C 1.46583 * 120.00510 * 179.97438 * 17 16 15 20 20 C 1.36754 * 126.85681 * 180.02562 * 19 17 16 21 21 N 1.33281 * 107.77613 * 179.72572 * 20 19 17 22 22 C 1.30884 * 109.70030 * 0.43097 * 21 20 19 23 23 C 1.50699 * 125.40778 * 179.82887 * 22 21 20 24 24 C 1.52997 * 109.47078 * 264.69698 * 23 22 21 25 25 C 1.52992 * 109.46956 * 144.69386 * 23 22 21 26 26 N 1.34466 * 109.18176 * 359.56540 * 22 21 20 27 27 H 0.97005 * 126.47558 * 180.22957 * 26 22 21 28 28 H 1.09000 * 109.47246 * 300.00085 * 1 2 3 29 29 H 1.09007 * 109.47043 * 59.99841 * 1 2 3 30 30 H 1.09005 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46550 * 240.00182 * 2 1 3 32 32 H 1.08997 * 109.46993 * 120.00384 * 2 1 3 33 33 H 1.08993 * 109.47139 * 29.99968 * 4 3 2 34 34 H 1.09007 * 109.46982 * 150.00508 * 4 3 2 35 35 H 0.96996 * 120.00880 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47403 * 60.00520 * 15 13 3 37 37 H 1.09005 * 109.47362 * 299.99774 * 15 13 3 38 38 H 1.08003 * 126.10920 * 359.95079 * 20 19 17 39 39 H 1.09002 * 109.46959 * 24.69610 * 23 22 21 40 40 H 1.09002 * 109.47153 * 299.99793 * 24 23 22 41 41 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.47261 * 59.99965 * 24 23 22 43 43 H 1.09002 * 109.47103 * 60.00312 * 25 23 22 44 44 H 1.09001 * 109.47066 * 180.02562 * 25 23 22 45 45 H 1.08996 * 109.47747 * 299.99900 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 5.3910 2.1826 -3.2578 9 14 3.0128 3.4352 -3.9292 10 1 3.1162 4.8555 -3.5080 11 1 3.4057 3.3120 -5.3559 12 1 1.6131 2.9692 -3.7592 13 6 2.2430 2.0164 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9914 1.3061 2.4723 16 8 2.3055 2.1958 3.5760 17 6 2.1338 1.7097 4.8223 18 8 1.7318 0.5731 4.9816 19 6 2.4316 2.5515 5.9849 20 6 2.3094 2.2042 7.3019 21 7 2.6860 3.2513 8.0355 22 6 3.0292 4.2400 7.2496 23 6 3.5080 5.5936 7.7074 24 6 2.3279 6.5667 7.7434 25 6 4.5692 6.1144 6.7363 26 7 2.8922 3.8543 5.9687 27 1 3.0805 4.3896 5.1820 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1411 -1.1382 35 1 5.7169 2.5725 -4.0841 36 1 2.6213 0.4184 2.5302 37 1 0.9433 1.0124 2.5299 38 1 1.9719 1.2504 7.6800 39 1 3.9390 5.5082 8.7050 40 1 1.8969 6.6521 6.7458 41 1 2.6742 7.5456 8.0750 42 1 1.5718 6.1955 8.4353 43 1 4.1382 6.1998 5.7387 44 1 4.9159 7.0933 7.0677 45 1 5.4099 5.4212 6.7107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771634001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:08 Heat of formation + Delta-G solvation = -92.620646 kcal Electronic energy + Delta-G solvation = -27128.794072 eV Core-core repulsion = 23146.550146 eV Total energy + Delta-G solvation = -3982.243926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.49827 -41.63287 -40.55681 -37.74422 -37.05938 -36.40907 -34.90728 -33.92944 -32.10491 -31.15145 -30.37704 -28.75336 -28.10922 -25.57557 -24.50612 -24.12007 -23.33008 -22.00818 -21.23202 -20.32745 -19.83519 -19.15227 -18.32823 -18.01532 -17.88594 -17.21936 -16.70391 -16.62552 -16.20271 -15.98426 -15.61845 -15.22948 -15.04074 -14.79942 -14.77146 -14.55213 -14.20069 -14.01133 -13.87412 -13.76065 -13.43130 -13.19867 -13.09456 -12.60384 -12.56739 -12.45291 -12.20926 -12.20088 -12.18295 -12.04718 -11.94203 -11.85189 -11.76595 -11.45721 -11.38132 -10.86265 -10.83918 -9.80594 -9.56715 -8.35977 -6.41993 -0.13824 1.01622 1.32593 1.36009 1.44465 1.44614 1.52258 1.75340 1.93059 2.28608 2.29834 2.98215 3.08321 3.33020 3.53148 3.72904 3.88610 3.90997 4.04457 4.07654 4.11651 4.17503 4.34435 4.43062 4.56619 4.59321 4.69908 4.73442 4.82565 4.85374 4.91015 4.93272 4.97085 5.00197 5.08127 5.25076 5.30271 5.32390 5.34673 5.42344 5.52704 6.06377 6.18416 6.34749 6.50685 6.59835 6.68278 7.10787 7.25242 8.80906 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.002878 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.456728 B = 9727.036903 C =11048.771545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 N -0.591 5.591 4 C 0.227 3.773 5 C -0.539 4.539 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.502 3.498 14 O -0.574 6.574 15 C 0.063 3.937 16 O -0.350 6.350 17 C 0.548 3.452 18 O -0.510 6.510 19 C -0.098 4.098 20 C 0.091 3.909 21 N -0.515 5.515 22 C 0.267 3.733 23 C -0.014 4.014 24 C -0.143 4.143 25 C -0.157 4.157 26 N -0.534 5.534 27 H 0.436 0.564 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.204 0.796 39 H 0.119 0.881 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 3.085 20.315 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.031 4.031 3 N -0.323 5.323 4 C 0.105 3.895 5 C -0.578 4.578 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.290 3.710 14 O -0.454 6.454 15 C -0.014 4.014 16 O -0.265 6.265 17 C 0.393 3.607 18 O -0.398 6.398 19 C -0.212 4.212 20 C -0.065 4.065 21 N -0.235 5.235 22 C 0.003 3.997 23 C -0.034 4.034 24 C -0.201 4.201 25 C -0.215 4.215 26 N -0.138 5.138 27 H 0.277 0.723 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.221 0.779 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.995 3.338 20.974 23.472 hybrid contribution 0.334 0.276 -2.239 2.280 sum -9.661 3.614 18.735 21.387 Atomic orbital electron populations 1.22185 0.93617 1.03984 1.02292 1.21914 0.95936 0.80703 1.04506 1.47960 1.63721 1.15352 1.05249 1.19384 0.95072 0.93185 0.81882 1.21545 0.97030 1.32343 1.06868 0.95243 1.25848 0.96705 0.97139 0.98914 1.70043 1.17479 1.46478 1.24470 0.85725 0.80534 0.79014 0.77758 1.20114 1.20093 1.15871 1.20461 0.78129 0.86678 0.85771 1.90666 1.46923 1.20049 1.87726 1.22894 1.05187 0.91853 0.81421 1.86594 1.79492 1.45613 1.14831 1.19733 0.74265 0.85018 0.81692 1.90890 1.43997 1.18561 1.86395 1.19961 1.19422 0.87767 0.94028 1.23081 0.97561 0.99338 0.86486 1.70311 1.19817 1.00134 1.33238 1.24162 0.98091 0.98302 0.79166 1.19976 0.97157 0.84427 1.01865 1.21861 0.96615 0.99304 1.02335 1.21972 0.97737 1.03175 0.98572 1.43296 1.48581 1.11442 1.10527 0.72308 0.92209 0.92859 0.88513 0.89966 0.88774 0.92610 0.95998 0.92203 0.86536 0.85263 0.77901 0.86294 0.92921 0.88914 0.92266 0.92673 0.88616 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.64 16 2 C 0.09 2.53 5.93 86.38 0.51 3.04 16 3 N -0.59 -23.04 2.46 -826.18 -2.03 -25.07 16 4 C 0.23 10.67 4.23 85.63 0.36 11.03 16 5 C -0.54 -31.13 9.94 25.60 0.25 -30.87 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.71 5.47 84.65 0.46 1.17 16 8 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 9 Si 0.95 43.38 27.47 68.60 1.88 45.26 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 13 C 0.50 20.06 7.75 87.65 0.68 20.74 16 14 O -0.57 -28.45 16.08 15.76 0.25 -28.19 16 15 C 0.06 1.86 4.51 71.23 0.32 2.18 16 16 O -0.35 -10.99 9.77 -51.50 -0.50 -11.49 16 17 C 0.55 15.43 7.93 70.00 0.56 15.98 16 18 O -0.51 -15.10 16.70 19.46 0.33 -14.77 16 19 C -0.10 -2.43 7.13 39.97 0.29 -2.15 16 20 C 0.09 2.07 11.66 84.13 0.98 3.05 16 21 N -0.52 -11.77 11.20 -187.35 -2.10 -13.87 16 22 C 0.27 5.18 6.84 138.20 0.95 6.13 16 23 C -0.01 -0.18 3.39 -11.54 -0.04 -0.21 16 24 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 25 C -0.16 -1.71 8.93 71.98 0.64 -1.07 16 26 N -0.53 -11.40 5.94 -176.18 -1.05 -12.45 16 27 H 0.44 8.59 8.12 -92.70 -0.75 7.83 16 28 H 0.06 1.16 7.22 -2.39 -0.02 1.14 16 29 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.10 1.45 8.14 -2.38 -0.02 1.44 16 31 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 32 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 33 H 0.06 2.38 7.13 -2.39 -0.02 2.37 16 34 H 0.02 1.11 6.85 -2.38 -0.02 1.09 16 35 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.12 3.08 7.40 -2.39 -0.02 3.06 16 37 H 0.13 3.02 7.18 -2.38 -0.02 3.00 16 38 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.05 0.65 7.40 -2.39 -0.02 0.63 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -79.63 382.82 4.65 -74.99 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.20 Total: 18.82 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 7.36 Total: 25.55 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.88 Total: -110.16 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: 0.08 Total: -54.46 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.26 kcal Total: -79.63 4.65 -74.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771634001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.635 kcal (2) G-P(sol) polarization free energy of solvation -79.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds