Wall clock time and date at job start Tue Mar 31 2020 13:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99600 * 180.02562 * 13 12 11 16 16 H 1.09000 * 115.54860 * 325.66569 * 15 13 12 17 17 C 1.53000 * 117.49911 * 111.37701 * 15 13 12 18 18 C 1.53001 * 117.49752 * 180.02562 * 15 13 12 19 19 H 1.09001 * 117.49892 * 0.02562 * 18 15 13 20 20 C 1.50697 * 117.50367 * 145.01871 * 18 15 13 21 21 C 1.36126 * 120.17040 * 59.99540 * 20 18 15 22 22 C 1.39335 * 120.98732 * 179.97438 * 21 20 18 23 23 C 1.36122 * 120.98880 * 0.02562 * 22 21 20 24 24 C 1.40502 * 119.65816 * 0.02562 * 23 22 21 25 25 C 1.40541 * 121.29386 * 179.97438 * 24 23 22 26 26 C 1.36089 * 119.65232 * 180.02562 * 25 24 23 27 27 C 1.39375 * 120.99420 * 0.02562 * 26 25 24 28 28 C 1.36090 * 120.99678 * 0.02562 * 27 26 25 29 29 C 1.40494 * 120.17505 * 239.72432 * 20 18 15 30 30 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 35 35 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 36 36 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 37 37 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 38 38 H 1.08993 * 117.50045 * 214.97666 * 17 15 13 39 39 H 1.08998 * 117.49608 * 0.02562 * 17 15 13 40 40 H 1.08005 * 119.51062 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.50316 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.17450 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.17166 * 0.03656 * 25 24 23 44 44 H 1.08000 * 119.50551 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.50123 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.17471 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0398 -4.0178 0.0220 13 6 7.3649 -4.2641 0.0279 14 8 8.1529 -3.3423 0.0293 15 6 7.8672 -5.6849 0.0316 16 1 7.2558 -6.3982 0.5845 17 6 8.5744 -6.1875 -1.2286 18 6 9.3821 -5.8986 0.0389 19 1 10.0155 -5.0115 0.0415 20 6 9.9147 -7.0795 0.8089 21 6 9.5300 -8.3424 0.4769 22 6 10.0122 -9.4465 1.1769 23 6 10.8815 -9.2943 2.2133 24 6 11.3005 -8.0059 2.5858 25 6 12.1964 -7.8090 3.6506 26 6 12.5796 -6.5463 3.9833 27 6 12.0965 -5.4419 3.2838 28 6 11.2270 -5.5938 2.2480 29 6 10.8151 -6.8832 1.8693 30 1 -0.4849 0.8400 0.0004 31 1 3.8786 -0.6821 -0.8838 32 1 3.8711 -0.6785 0.8962 33 1 3.6545 -3.1486 0.9003 34 1 3.6618 -3.1522 -0.8796 35 1 5.9188 -2.1245 -0.8715 36 1 5.9108 -2.1211 0.9084 37 1 5.4095 -4.7551 0.0205 38 1 8.4284 -7.2316 -1.5052 39 1 8.6767 -5.4903 -2.0602 40 1 8.8408 -8.4909 -0.3412 41 1 9.6915 -10.4378 0.8929 42 1 11.2466 -10.1592 2.7471 43 1 12.5788 -8.6554 4.2018 44 1 13.2678 -6.3977 4.8022 45 1 12.4163 -4.4504 3.5686 46 1 10.8606 -4.7287 1.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170968041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:39 Heat of formation + Delta-G solvation = 14.589597 kcal Electronic energy + Delta-G solvation = -25117.404215 eV Core-core repulsion = 21550.658537 eV Total energy + Delta-G solvation = -3566.745678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00126 -39.80727 -37.59309 -36.19470 -35.39639 -33.32558 -32.73868 -31.45263 -30.60259 -29.40113 -27.52435 -24.76364 -24.27912 -23.41769 -22.93108 -22.35068 -20.76556 -20.33699 -19.63125 -17.89452 -17.65858 -16.97632 -16.66576 -16.57056 -15.74113 -15.46118 -14.99170 -14.75323 -14.32715 -14.18567 -13.98834 -13.97149 -13.81728 -13.57995 -13.27612 -12.72673 -12.71521 -12.22762 -12.16062 -12.03816 -11.96488 -11.80149 -11.36637 -11.12639 -11.09723 -10.92865 -10.90219 -10.73062 -10.22287 -9.99413 -9.94917 -9.79273 -9.56612 -9.24256 -8.90213 -8.89286 -8.56769 -8.08530 -6.07538 -4.06301 0.21573 0.72704 1.70656 2.47858 2.70808 3.21122 3.30266 3.37905 3.42098 3.57724 3.91584 4.14879 4.34972 4.43243 4.50396 4.51978 4.61835 4.63299 4.71542 4.81711 4.91555 4.96785 5.08758 5.13709 5.16394 5.26450 5.38029 5.49094 5.54271 5.62789 5.64003 5.66666 5.70435 5.89256 5.93947 5.96408 5.99181 6.18136 6.26106 6.32556 6.37210 6.42360 6.54866 6.67444 6.71616 6.77148 7.20958 7.34439 7.60514 7.75212 8.28857 8.49023 8.96219 9.54635 11.05649 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.001993 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.120661 B =14042.461768 C =14672.305213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.720 5.720 13 C 0.538 3.462 14 O -0.545 6.545 15 C -0.174 4.174 16 H 0.126 0.874 17 C -0.142 4.142 18 C -0.088 4.088 19 H 0.129 0.871 20 C -0.034 4.034 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.049 4.049 25 C -0.112 4.112 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.100 4.100 29 C -0.043 4.043 30 H 0.263 0.737 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.401 0.599 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.663 -20.804 3.556 33.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.370 5.370 13 C 0.324 3.676 14 O -0.423 6.423 15 C -0.195 4.195 16 H 0.143 0.857 17 C -0.180 4.180 18 C -0.107 4.107 19 H 0.147 0.853 20 C -0.034 4.034 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.049 4.049 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.118 4.118 29 C -0.043 4.043 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 26.046 -19.989 3.563 33.025 hybrid contribution -0.126 0.549 0.095 0.571 sum 25.920 -19.440 3.658 32.606 Atomic orbital electron populations 1.69911 1.06304 1.26960 1.50962 1.25037 0.94764 0.99253 0.94473 0.86773 0.80401 0.83518 0.78590 1.20237 1.21352 1.18908 1.21094 0.89292 0.94511 1.51121 0.91004 1.19505 0.97293 0.91463 0.96658 1.21706 0.90573 1.01069 1.01775 1.21672 0.96197 0.81067 1.01940 1.46086 1.06494 1.10061 1.74375 1.19563 0.82612 0.89361 0.76109 1.90685 1.55539 1.45916 1.50170 1.22400 0.95823 0.96335 1.04964 0.85656 1.23161 1.01010 1.02714 0.91080 1.21051 0.92182 0.98426 0.99027 0.85341 1.18931 0.96191 0.93423 0.94900 1.20766 1.00852 0.91866 1.00444 1.20808 0.97418 0.98758 0.95875 1.21014 0.98302 0.95878 0.97825 1.18078 0.97700 0.93020 0.96137 1.21000 0.97617 0.97580 0.96781 1.20886 0.99885 0.92666 0.99731 1.20907 0.97648 0.99067 0.96154 1.21220 0.96949 0.96411 0.97209 1.17881 0.97435 0.93294 0.95677 0.92690 0.96742 0.96316 0.92076 0.92071 0.91765 0.91753 0.76498 0.87297 0.87505 0.85630 0.85847 0.85637 0.85643 0.86007 0.85859 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.10 5.27 -26.74 -0.14 -2.24 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.72 -9.73 5.56 -60.30 -0.34 -10.06 16 13 C 0.54 7.49 7.61 -10.98 -0.08 7.41 16 14 O -0.55 -9.59 16.26 5.56 0.09 -9.50 16 15 C -0.17 -1.77 5.82 -91.77 -0.53 -2.30 16 16 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.14 -1.19 9.56 -26.70 -0.26 -1.45 16 18 C -0.09 -0.89 5.00 -91.75 -0.46 -1.34 16 19 H 0.13 1.45 6.18 -51.93 -0.32 1.13 16 20 C -0.03 -0.34 5.62 -104.53 -0.59 -0.92 16 21 C -0.12 -1.00 9.23 -39.93 -0.37 -1.36 16 22 C -0.11 -0.83 9.95 -39.93 -0.40 -1.22 16 23 C -0.11 -0.89 9.77 -39.49 -0.39 -1.28 16 24 C -0.05 -0.47 5.74 -106.83 -0.61 -1.09 16 25 C -0.11 -0.92 9.77 -39.49 -0.39 -1.30 16 26 C -0.11 -0.91 9.95 -39.93 -0.40 -1.31 16 27 C -0.12 -1.08 9.95 -39.93 -0.40 -1.48 16 28 C -0.10 -1.04 9.35 -39.48 -0.37 -1.41 16 29 C -0.04 -0.45 5.74 -106.83 -0.61 -1.07 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.01 0.33 7.58 -51.93 -0.39 -0.06 16 32 H 0.02 0.44 7.19 -51.93 -0.37 0.07 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.40 4.35 8.47 -40.82 -0.35 4.00 16 38 H 0.11 0.67 6.18 -51.93 -0.32 0.34 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.13 0.78 5.96 -52.48 -0.31 0.47 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.13 1.37 6.38 -52.49 -0.33 1.04 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -33.69 380.53 -11.60 -45.29 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.64 Total: 2.48 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -6.55 Total: -24.08 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.44 Total: -36.99 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.69 -11.60 -45.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170968041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.877 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds