Wall clock time and date at job start Tue Mar 31 2020 13:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99600 * 180.02562 * 13 12 11 16 16 H 1.09000 * 115.54860 * 325.66569 * 15 13 12 17 17 C 1.53000 * 117.49911 * 111.37701 * 15 13 12 18 18 C 1.53001 * 117.49752 * 180.02562 * 15 13 12 19 19 H 1.09001 * 117.49892 * 0.02562 * 18 15 13 20 20 C 1.50697 * 117.50367 * 145.01871 * 18 15 13 21 21 C 1.36126 * 120.17040 * 59.99540 * 20 18 15 22 22 C 1.39335 * 120.98732 * 179.97438 * 21 20 18 23 23 C 1.36122 * 120.98880 * 0.02562 * 22 21 20 24 24 C 1.40502 * 119.65816 * 0.02562 * 23 22 21 25 25 C 1.40541 * 121.29386 * 179.97438 * 24 23 22 26 26 C 1.36089 * 119.65232 * 180.02562 * 25 24 23 27 27 C 1.39375 * 120.99420 * 0.02562 * 26 25 24 28 28 C 1.36090 * 120.99678 * 0.02562 * 27 26 25 29 29 C 1.40494 * 120.17505 * 239.72432 * 20 18 15 30 30 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 35 35 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 36 36 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 37 37 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 38 38 H 1.08993 * 117.50045 * 214.97666 * 17 15 13 39 39 H 1.08998 * 117.49608 * 0.02562 * 17 15 13 40 40 H 1.08005 * 119.51062 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.50316 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.17450 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.17166 * 0.03656 * 25 24 23 44 44 H 1.08000 * 119.50551 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.50123 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.17471 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0398 -4.0178 0.0220 13 6 7.3649 -4.2641 0.0279 14 8 8.1529 -3.3423 0.0293 15 6 7.8672 -5.6849 0.0316 16 1 7.2558 -6.3982 0.5845 17 6 8.5744 -6.1875 -1.2286 18 6 9.3821 -5.8986 0.0389 19 1 10.0155 -5.0115 0.0415 20 6 9.9147 -7.0795 0.8089 21 6 9.5300 -8.3424 0.4769 22 6 10.0122 -9.4465 1.1769 23 6 10.8815 -9.2943 2.2133 24 6 11.3005 -8.0059 2.5858 25 6 12.1964 -7.8090 3.6506 26 6 12.5796 -6.5463 3.9833 27 6 12.0965 -5.4419 3.2838 28 6 11.2270 -5.5938 2.2480 29 6 10.8151 -6.8832 1.8693 30 1 -0.4849 0.8400 0.0004 31 1 3.8786 -0.6821 -0.8838 32 1 3.8711 -0.6785 0.8962 33 1 3.6545 -3.1486 0.9003 34 1 3.6618 -3.1522 -0.8796 35 1 5.9188 -2.1245 -0.8715 36 1 5.9108 -2.1211 0.9084 37 1 5.4095 -4.7551 0.0205 38 1 8.4284 -7.2316 -1.5052 39 1 8.6767 -5.4903 -2.0602 40 1 8.8408 -8.4909 -0.3412 41 1 9.6915 -10.4378 0.8929 42 1 11.2466 -10.1592 2.7471 43 1 12.5788 -8.6554 4.2018 44 1 13.2678 -6.3977 4.8022 45 1 12.4163 -4.4504 3.5686 46 1 10.8606 -4.7287 1.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170968041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:38 Heat of formation + Delta-G solvation = -3.758249 kcal Electronic energy + Delta-G solvation = -25118.199837 eV Core-core repulsion = 21550.658537 eV Total energy + Delta-G solvation = -3567.541300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69887 -40.79892 -38.40181 -37.10162 -36.59285 -35.15706 -33.49308 -33.18279 -31.20727 -30.07776 -29.17093 -25.96319 -25.01628 -24.07108 -23.86061 -23.49790 -22.26732 -21.24804 -20.67687 -19.00558 -18.65406 -18.27263 -17.58948 -17.29944 -16.92040 -16.71428 -16.23293 -15.84852 -15.43583 -15.28165 -15.02882 -14.79552 -14.67928 -14.58380 -14.29930 -13.95640 -13.83220 -13.66764 -13.49278 -12.85168 -12.76467 -12.75766 -12.72248 -12.46952 -11.98660 -11.95895 -11.83097 -11.74891 -11.61637 -11.54689 -11.46384 -11.34804 -10.94010 -10.77337 -10.56799 -10.12159 -9.52826 -8.71419 -8.30499 -6.34333 -0.40972 0.09847 1.04298 1.35611 1.37365 1.46780 1.49065 2.05006 2.17621 2.35125 2.81609 3.05042 3.23311 3.43818 3.62690 3.79947 3.83973 3.96333 4.01787 4.04450 4.11766 4.16024 4.19038 4.20912 4.35460 4.47710 4.48051 4.52243 4.61119 4.75275 4.85809 4.87502 4.89863 4.94459 5.01398 5.02294 5.07469 5.26952 5.31852 5.37087 5.38040 5.48083 5.53714 5.54993 5.63780 5.64054 5.74085 5.94600 6.12002 6.26168 6.54218 6.73627 7.20766 7.30381 8.85791 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.001993 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.120661 B =14042.461768 C =14672.305213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.126 3.874 12 N -0.712 5.712 13 C 0.535 3.465 14 O -0.587 6.587 15 C -0.176 4.176 16 H 0.147 0.853 17 C -0.122 4.122 18 C -0.093 4.093 19 H 0.104 0.896 20 C -0.055 4.055 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.071 4.071 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.065 4.065 30 H 0.266 0.734 31 H 0.020 0.980 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.416 0.584 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.133 0.867 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.300 -22.865 3.654 35.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.363 5.363 13 C 0.323 3.677 14 O -0.468 6.468 15 C -0.197 4.197 16 H 0.165 0.835 17 C -0.159 4.159 18 C -0.111 4.111 19 H 0.123 0.877 20 C -0.055 4.055 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.132 4.132 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.065 4.065 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.253 0.747 38 H 0.158 0.842 39 H 0.119 0.881 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.170 0.830 44 H 0.164 0.836 45 H 0.151 0.849 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 27.681 -22.088 3.658 35.602 hybrid contribution -0.649 1.097 0.081 1.277 sum 27.031 -20.992 3.739 34.429 Atomic orbital electron populations 1.70055 1.08164 1.28127 1.52626 1.25990 0.95622 1.03431 0.94255 0.85701 0.79468 0.78554 0.79206 1.19177 1.20983 1.17283 1.21457 0.91843 0.93279 1.50268 0.94349 1.19472 0.94143 0.94690 0.96759 1.21476 0.91904 0.98134 1.02243 1.21307 0.94475 0.82718 1.01248 1.45925 1.06943 1.09340 1.74082 1.20203 0.82093 0.90642 0.74800 1.90668 1.56514 1.47635 1.52016 1.22362 0.96227 0.94118 1.06970 0.83499 1.23304 0.98497 1.04169 0.89912 1.20920 0.91593 0.98119 1.00507 0.87749 1.18960 0.97171 0.93946 0.95389 1.21072 1.00458 0.91269 1.00636 1.21175 0.96923 0.99808 0.95409 1.21364 0.97972 0.95892 0.97985 1.18410 0.98405 0.93534 0.96730 1.21371 0.96797 0.98501 0.96300 1.21179 1.00312 0.92366 1.00302 1.21157 0.97205 1.00229 0.95810 1.21242 0.98474 0.96404 0.98347 1.18139 0.98190 0.93642 0.96497 0.92497 0.96180 0.96241 0.91772 0.91500 0.92352 0.92723 0.74726 0.84172 0.88073 0.83438 0.83048 0.83176 0.83020 0.83614 0.84865 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.00 0.23 5.47 84.66 0.46 0.69 16 3 Si 0.95 44.60 27.47 68.60 1.88 46.49 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 7 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.61 5.27 30.59 0.16 -3.45 16 11 C 0.13 4.06 5.67 86.38 0.49 4.55 16 12 N -0.71 -18.48 5.56 -463.06 -2.57 -21.05 16 13 C 0.53 14.70 7.61 87.66 0.67 15.37 16 14 O -0.59 -21.16 16.26 -3.01 -0.05 -21.21 16 15 C -0.18 -3.35 5.82 -11.54 -0.07 -3.42 16 16 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.12 -1.82 9.56 30.61 0.29 -1.52 16 18 C -0.09 -1.85 5.00 -11.52 -0.06 -1.90 16 19 H 0.10 2.57 6.18 -2.39 -0.01 2.56 16 20 C -0.05 -1.03 5.62 -19.81 -0.11 -1.14 16 21 C -0.12 -1.62 9.23 22.04 0.20 -1.41 16 22 C -0.12 -1.37 9.95 22.04 0.22 -1.15 16 23 C -0.11 -1.52 9.77 22.33 0.22 -1.30 16 24 C -0.07 -1.27 5.74 -21.30 -0.12 -1.40 16 25 C -0.11 -1.66 9.77 22.33 0.22 -1.44 16 26 C -0.12 -1.87 9.95 22.04 0.22 -1.66 16 27 C -0.13 -2.34 9.95 22.04 0.22 -2.12 16 28 C -0.13 -2.81 9.35 22.34 0.21 -2.60 16 29 C -0.06 -1.38 5.74 -21.30 -0.12 -1.50 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.02 0.90 7.58 -2.38 -0.02 0.88 16 32 H 0.02 0.89 7.19 -2.39 -0.02 0.87 16 33 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.42 8.27 8.47 -92.71 -0.79 7.48 16 38 H 0.14 1.19 6.18 -2.39 -0.01 1.18 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.15 1.27 5.96 -2.91 -0.02 1.25 16 41 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.12 2.80 6.38 -2.91 -0.02 2.78 16 Total: -1.00 -75.10 380.53 3.18 -71.92 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.15 Total: 18.74 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.47 Total: -35.82 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -2.27 Total: -80.11 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -75.10 3.18 -71.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170968041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.157 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds