Wall clock time and date at job start Tue Mar 31 2020 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20818 * 119.99632 * 2 1 4 4 O 1.34231 * 120.00272 * 179.97438 * 2 1 3 5 5 C 1.45197 * 117.00251 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47277 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46680 * 60.00326 * 6 5 4 8 8 C 1.52995 * 109.47217 * 300.00294 * 6 5 4 9 9 C 1.52996 * 109.47389 * 180.02562 * 6 5 4 10 10 C 1.50696 * 109.47220 * 180.02562 * 9 6 5 11 11 O 1.21290 * 120.00012 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 6 13 13 C 1.40159 * 119.99983 * 179.97438 * 12 10 9 14 14 C 1.40409 * 125.97033 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86602 * 179.73843 * 14 13 12 16 16 N 1.34966 * 107.86079 * 0.39163 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.87198 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31219 * 125.97718 * 179.97438 * 13 12 10 27 27 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47463 * 300.00092 * 1 2 3 29 29 H 1.09000 * 109.47371 * 60.00455 * 1 2 3 30 30 H 1.09001 * 109.46934 * 59.99987 * 5 4 2 31 31 H 1.08996 * 109.46974 * 300.00584 * 5 4 2 32 32 H 1.09008 * 109.47161 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47321 * 299.99362 * 7 6 5 34 34 H 1.08993 * 109.47649 * 60.00125 * 7 6 5 35 35 H 1.09004 * 109.47466 * 300.00092 * 8 6 5 36 36 H 1.09004 * 109.47470 * 60.00218 * 8 6 5 37 37 H 1.09004 * 109.47585 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.46879 * 60.00047 * 9 6 5 39 39 H 1.09006 * 109.47056 * 300.00623 * 9 6 5 40 40 H 0.97003 * 120.00166 * 0.02562 * 12 10 9 41 41 H 1.08002 * 126.06850 * 0.02562 * 14 13 12 42 42 H 1.08003 * 126.07024 * 180.26845 * 15 14 13 43 43 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 44 44 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 45 45 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1110 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0864 0.0011 6 6 4.2130 -2.5003 0.0023 7 6 3.7420 -3.2479 -1.2468 8 6 3.7410 -3.2464 1.2517 9 6 5.7409 -2.4202 0.0035 10 6 6.3169 -3.8127 0.0040 11 8 5.5781 -4.7746 0.0030 12 7 7.6531 -3.9893 0.0046 13 6 8.1888 -5.2844 0.0056 14 6 7.4540 -6.4809 0.0057 15 6 8.3337 -7.5081 0.0009 16 7 9.5787 -6.9869 0.0068 17 6 10.8304 -7.7481 0.0072 18 6 11.6834 -7.3129 -1.1565 19 1 11.3288 -6.5457 -1.8288 20 6 12.9165 -7.8941 -1.3629 21 7 13.3507 -8.8246 -0.5411 22 14 13.9742 -7.3541 -2.8048 23 1 15.2455 -8.1216 -2.8010 24 1 13.2467 -7.6075 -4.0745 25 1 14.2709 -5.9040 -2.6853 26 7 9.4647 -5.5908 0.0058 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9638 -0.5541 0.8911 31 1 3.9644 -0.5544 -0.8888 32 1 4.1583 -4.2554 -1.2458 33 1 2.6535 -3.3051 -1.2472 34 1 4.0783 -2.7164 -2.1369 35 1 4.0765 -2.7137 2.1416 36 1 2.6524 -3.3036 1.2513 37 1 4.1572 -4.2538 1.2524 38 1 6.0761 -1.8876 0.8935 39 1 6.0776 -1.8884 -0.8865 40 1 8.2439 -3.2200 0.0050 41 1 6.3774 -6.5659 0.0045 42 1 8.0843 -8.5589 -0.0044 43 1 10.6089 -8.8116 -0.0826 44 1 11.3662 -7.5659 0.9387 45 1 12.8016 -9.1049 0.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417648024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:53 Heat of formation + Delta-G solvation = -52.117676 kcal Electronic energy + Delta-G solvation = -26736.014582 eV Core-core repulsion = 22755.526997 eV Total energy + Delta-G solvation = -3980.487586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04652 -40.70688 -39.77881 -37.50553 -35.82150 -34.75647 -33.70954 -31.12059 -30.81390 -29.44672 -28.58537 -27.36336 -26.97087 -26.13443 -23.24018 -22.11105 -21.43422 -20.59448 -19.68322 -19.25661 -17.94818 -17.21691 -17.11290 -16.91689 -16.71058 -16.12598 -15.72152 -15.17991 -14.76991 -14.62293 -14.27567 -14.09161 -13.80892 -13.48686 -13.40337 -13.24896 -13.11084 -12.84399 -12.65153 -12.47544 -12.35206 -11.95117 -11.89785 -11.62788 -11.29496 -11.23877 -11.16488 -11.08365 -10.87984 -10.81615 -10.76963 -10.38806 -10.17928 -10.02281 -9.44968 -9.02444 -8.60474 -8.24183 -7.56254 -6.60433 -4.34671 1.82454 2.21568 2.27164 2.73507 2.82204 3.36129 3.37796 3.56593 3.61686 3.73814 4.27075 4.28666 4.39093 4.42280 4.58026 4.73018 4.79936 4.81339 4.96908 5.02031 5.10912 5.13446 5.22854 5.28086 5.42044 5.42939 5.67785 5.73740 5.79866 5.86236 5.97636 6.10907 6.12893 6.32158 6.34303 6.38073 6.49709 6.60922 6.72247 7.31334 7.38473 7.43323 7.67375 7.79808 8.18021 8.31398 8.50989 8.59391 9.33550 10.77111 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.001999 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.626267 B =14005.776558 C =14471.173419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.458 3.542 3 O -0.519 6.519 4 O -0.348 6.348 5 C 0.077 3.923 6 C -0.043 4.043 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.130 4.130 10 C 0.524 3.476 11 O -0.507 6.507 12 N -0.631 5.631 13 C 0.258 3.742 14 C -0.284 4.284 15 C 0.050 3.950 16 N -0.317 5.317 17 C 0.249 3.751 18 C -0.608 4.608 19 H 0.063 0.937 20 C 0.023 3.977 21 N -0.904 5.904 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 N -0.302 5.302 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.411 0.589 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 14.587 2.074 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.302 3.698 3 O -0.408 6.408 4 O -0.264 6.264 5 C 0.003 3.997 6 C -0.044 4.044 7 C -0.211 4.211 8 C -0.211 4.211 9 C -0.170 4.170 10 C 0.310 3.690 11 O -0.381 6.381 12 N -0.279 5.279 13 C 0.005 3.995 14 C -0.316 4.316 15 C -0.100 4.100 16 N -0.099 5.099 17 C 0.131 3.869 18 C -0.646 4.646 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.539 5.539 22 Si 0.904 3.096 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.211 1.211 26 N -0.133 5.133 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.246 0.754 41 H 0.180 0.820 42 H 0.185 0.815 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.437 14.304 1.335 25.806 hybrid contribution -1.741 0.557 0.777 1.986 sum -23.178 14.861 2.112 27.614 Atomic orbital electron populations 1.21588 0.87203 1.05864 1.05758 1.23864 0.92184 0.81672 0.72108 1.90696 1.70951 1.33273 1.45833 1.86503 1.22159 1.34409 1.83356 1.23140 0.76256 0.97740 1.02572 1.20285 0.91992 0.93074 0.99003 1.22099 1.01800 1.02595 0.94597 1.22096 1.01805 1.02568 0.94582 1.21634 0.95629 0.94560 1.05214 1.20388 0.80924 0.91640 0.76017 1.90531 1.57963 1.42180 1.47450 1.42542 1.07104 1.05640 1.72576 1.19128 0.91598 0.85486 1.03324 1.21531 1.01157 0.89033 1.19834 1.22578 0.85025 0.99859 1.02530 1.48788 1.06733 1.02305 1.52025 1.19765 0.78164 0.89724 0.99267 1.22095 1.04600 1.25541 1.12410 0.91861 1.25927 0.96115 0.94015 1.02129 1.70854 1.39944 1.28170 1.14977 0.83418 0.75878 0.76041 0.74293 1.20504 1.21233 1.21140 1.77354 1.14755 0.93368 1.27848 0.88959 0.87794 0.87780 0.91057 0.91029 0.89141 0.92123 0.93464 0.93504 0.92125 0.89166 0.88162 0.88131 0.75372 0.82050 0.81542 0.93613 0.94769 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 10.42 36.01 0.38 -0.20 16 2 C 0.46 3.84 8.07 36.01 0.29 4.13 16 3 O -0.52 -6.11 16.85 -18.74 -0.32 -6.42 16 4 O -0.35 -3.03 8.88 -39.26 -0.35 -3.38 16 5 C 0.08 0.64 4.32 37.16 0.16 0.80 16 6 C -0.04 -0.38 0.60 -154.51 -0.09 -0.47 16 7 C -0.15 -1.51 8.03 37.16 0.30 -1.21 16 8 C -0.15 -1.47 8.03 37.16 0.30 -1.18 16 9 C -0.13 -1.07 4.77 -27.89 -0.13 -1.20 16 10 C 0.52 6.49 7.21 -10.99 -0.08 6.41 16 11 O -0.51 -7.45 8.48 5.55 0.05 -7.40 16 12 N -0.63 -8.98 5.45 -11.13 -0.06 -9.04 16 13 C 0.26 4.97 8.11 -154.39 -1.25 3.71 16 14 C -0.28 -5.39 9.61 -39.83 -0.38 -5.77 16 15 C 0.05 0.97 11.44 -17.24 -0.20 0.78 16 16 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 17 C 0.25 6.25 5.57 -5.19 -0.03 6.22 16 18 C -0.61 -17.01 9.24 -34.44 -0.32 -17.33 16 19 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 21 N -0.90 -26.19 13.65 55.43 0.76 -25.43 16 22 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 26 N -0.30 -6.87 12.42 31.44 0.39 -6.48 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.09 1.09 5.51 -51.92 -0.29 0.80 16 33 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 37 H 0.09 1.06 5.51 -51.93 -0.29 0.78 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.41 4.73 8.82 -40.82 -0.36 4.37 16 41 H 0.16 2.89 5.92 -52.49 -0.31 2.58 16 42 H 0.17 2.65 8.06 -52.48 -0.42 2.23 16 43 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 44 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 45 H 0.27 7.56 7.22 -40.82 -0.29 7.26 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -34.74 374.89 -6.95 -41.69 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.60 Total: 3.40 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.16 Total: -4.75 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.86 Total: -48.47 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.62 Total: -17.21 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.74 -6.95 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417648024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.429 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds