Wall clock time and date at job start Tue Mar 31 2020 13:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20818 * 119.99632 * 2 1 4 4 O 1.34231 * 120.00272 * 179.97438 * 2 1 3 5 5 C 1.45197 * 117.00251 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47277 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46680 * 60.00326 * 6 5 4 8 8 C 1.52995 * 109.47217 * 300.00294 * 6 5 4 9 9 C 1.52996 * 109.47389 * 180.02562 * 6 5 4 10 10 C 1.50696 * 109.47220 * 180.02562 * 9 6 5 11 11 O 1.21290 * 120.00012 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99736 * 179.97438 * 10 9 6 13 13 C 1.40159 * 119.99983 * 179.97438 * 12 10 9 14 14 C 1.40409 * 125.97033 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86602 * 179.73843 * 14 13 12 16 16 N 1.34966 * 107.86079 * 0.39163 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.87198 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31219 * 125.97718 * 179.97438 * 13 12 10 27 27 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47463 * 300.00092 * 1 2 3 29 29 H 1.09000 * 109.47371 * 60.00455 * 1 2 3 30 30 H 1.09001 * 109.46934 * 59.99987 * 5 4 2 31 31 H 1.08996 * 109.46974 * 300.00584 * 5 4 2 32 32 H 1.09008 * 109.47161 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47321 * 299.99362 * 7 6 5 34 34 H 1.08993 * 109.47649 * 60.00125 * 7 6 5 35 35 H 1.09004 * 109.47466 * 300.00092 * 8 6 5 36 36 H 1.09004 * 109.47470 * 60.00218 * 8 6 5 37 37 H 1.09004 * 109.47585 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.46879 * 60.00047 * 9 6 5 39 39 H 1.09006 * 109.47056 * 300.00623 * 9 6 5 40 40 H 0.97003 * 120.00166 * 0.02562 * 12 10 9 41 41 H 1.08002 * 126.06850 * 0.02562 * 14 13 12 42 42 H 1.08003 * 126.07024 * 180.26845 * 15 14 13 43 43 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 44 44 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 45 45 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1110 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0864 0.0011 6 6 4.2130 -2.5003 0.0023 7 6 3.7420 -3.2479 -1.2468 8 6 3.7410 -3.2464 1.2517 9 6 5.7409 -2.4202 0.0035 10 6 6.3169 -3.8127 0.0040 11 8 5.5781 -4.7746 0.0030 12 7 7.6531 -3.9893 0.0046 13 6 8.1888 -5.2844 0.0056 14 6 7.4540 -6.4809 0.0057 15 6 8.3337 -7.5081 0.0009 16 7 9.5787 -6.9869 0.0068 17 6 10.8304 -7.7481 0.0072 18 6 11.6834 -7.3129 -1.1565 19 1 11.3288 -6.5457 -1.8288 20 6 12.9165 -7.8941 -1.3629 21 7 13.3507 -8.8246 -0.5411 22 14 13.9742 -7.3541 -2.8048 23 1 15.2455 -8.1216 -2.8010 24 1 13.2467 -7.6075 -4.0745 25 1 14.2709 -5.9040 -2.6853 26 7 9.4647 -5.5908 0.0058 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9638 -0.5541 0.8911 31 1 3.9644 -0.5544 -0.8888 32 1 4.1583 -4.2554 -1.2458 33 1 2.6535 -3.3051 -1.2472 34 1 4.0783 -2.7164 -2.1369 35 1 4.0765 -2.7137 2.1416 36 1 2.6524 -3.3036 1.2513 37 1 4.1572 -4.2538 1.2524 38 1 6.0761 -1.8876 0.8935 39 1 6.0776 -1.8884 -0.8865 40 1 8.2439 -3.2200 0.0050 41 1 6.3774 -6.5659 0.0045 42 1 8.0843 -8.5589 -0.0044 43 1 10.6089 -8.8116 -0.0826 44 1 11.3662 -7.5659 0.9387 45 1 12.8016 -9.1049 0.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417648024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:52 Heat of formation + Delta-G solvation = -73.414781 kcal Electronic energy + Delta-G solvation = -26736.938094 eV Core-core repulsion = 22755.526997 eV Total energy + Delta-G solvation = -3981.411097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32499 -41.55577 -40.89659 -38.31061 -36.74717 -36.09421 -35.47434 -32.79480 -31.26730 -31.02461 -29.57851 -28.13932 -27.95661 -27.58450 -25.12463 -23.25900 -22.36678 -21.94551 -20.97458 -20.11618 -19.23470 -18.61638 -18.19176 -18.00482 -17.55979 -16.93808 -16.84738 -16.63534 -15.94728 -15.64115 -15.51895 -15.41772 -15.05807 -14.88902 -14.31819 -14.09795 -13.96969 -13.89247 -13.77889 -13.68125 -13.34360 -13.23576 -13.08567 -12.76657 -12.62803 -12.51455 -12.09176 -11.96064 -11.95422 -11.82296 -11.76690 -11.60082 -11.54744 -11.45221 -10.98865 -10.70185 -10.52527 -9.81002 -9.18327 -8.77881 -6.56654 0.90715 1.21169 1.28894 1.43378 1.50913 1.57044 1.78022 1.80469 2.21306 2.35625 2.48966 3.00507 3.43867 3.65255 3.73786 3.83219 3.98192 4.03693 4.15244 4.32416 4.34632 4.43296 4.56099 4.56637 4.58876 4.58927 4.74253 4.75930 4.79785 4.85098 4.96177 4.96833 5.06833 5.08521 5.13689 5.24512 5.49942 5.51215 5.55036 5.61508 5.84991 5.95939 6.24027 6.27588 6.41273 6.76603 6.97228 7.15396 7.19324 8.57626 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.001999 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.626267 B =14005.776558 C =14471.173419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.456 3.544 3 O -0.558 6.558 4 O -0.353 6.353 5 C 0.077 3.923 6 C -0.038 4.038 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.122 4.122 10 C 0.523 3.477 11 O -0.528 6.528 12 N -0.628 5.628 13 C 0.269 3.731 14 C -0.288 4.288 15 C 0.051 3.949 16 N -0.345 5.345 17 C 0.259 3.741 18 C -0.621 4.621 19 H 0.045 0.955 20 C -0.019 4.019 21 N -0.923 5.923 22 Si 1.120 2.880 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.275 1.275 26 N -0.349 5.349 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.424 0.576 41 H 0.174 0.826 42 H 0.199 0.801 43 H 0.053 0.947 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.436 16.108 1.500 30.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.302 3.698 3 O -0.449 6.449 4 O -0.269 6.269 5 C 0.003 3.997 6 C -0.039 4.039 7 C -0.208 4.208 8 C -0.207 4.207 9 C -0.162 4.162 10 C 0.312 3.688 11 O -0.403 6.403 12 N -0.278 5.278 13 C 0.014 3.986 14 C -0.319 4.319 15 C -0.097 4.097 16 N -0.127 5.127 17 C 0.140 3.860 18 C -0.659 4.659 19 H 0.064 0.936 20 C -0.219 4.219 21 N -0.559 5.559 22 Si 0.941 3.059 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.200 1.200 26 N -0.180 5.180 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.261 0.739 41 H 0.191 0.809 42 H 0.215 0.785 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.051 15.835 0.776 27.977 hybrid contribution -1.453 0.119 1.001 1.768 sum -24.504 15.954 1.776 29.293 Atomic orbital electron populations 1.21730 0.83813 1.07287 1.07042 1.24742 0.93660 0.80828 0.70602 1.90679 1.71987 1.34415 1.47852 1.86518 1.22327 1.34857 1.83240 1.23100 0.76397 0.97055 1.03108 1.20221 0.92382 0.93242 0.98016 1.22032 1.01741 1.01460 0.95535 1.22027 1.01730 1.01463 0.95483 1.21702 0.94842 0.91817 1.07814 1.21226 0.79888 0.93167 0.74547 1.90534 1.58257 1.43517 1.48000 1.42770 1.08061 1.04167 1.72760 1.19514 0.90727 0.87695 1.00629 1.21763 1.01531 0.88930 1.19646 1.23194 0.83849 1.01680 1.00972 1.48544 1.06825 1.02700 1.54599 1.19402 0.79011 0.90251 0.97351 1.22282 1.05446 1.25162 1.13025 0.93650 1.27284 0.97370 0.93423 1.03834 1.70949 1.40174 1.29256 1.15515 0.82878 0.74718 0.76235 0.72099 1.20014 1.19631 1.20040 1.77266 1.16773 0.93476 1.30504 0.87494 0.86376 0.86398 0.90496 0.90578 0.91460 0.92106 0.92696 0.92579 0.92133 0.91429 0.85403 0.85562 0.73851 0.80923 0.78452 0.92950 0.96654 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 10.42 71.24 0.74 -0.02 16 2 C 0.46 6.84 8.07 71.24 0.57 7.42 16 3 O -0.56 -12.46 16.85 21.99 0.37 -12.09 16 4 O -0.35 -5.49 8.88 -51.43 -0.46 -5.95 16 5 C 0.08 1.12 4.32 71.98 0.31 1.43 16 6 C -0.04 -0.59 0.60 -52.18 -0.03 -0.62 16 7 C -0.15 -2.73 8.03 71.98 0.58 -2.15 16 8 C -0.15 -2.66 8.03 71.98 0.58 -2.08 16 9 C -0.12 -1.66 4.77 29.85 0.14 -1.52 16 10 C 0.52 12.07 7.21 87.66 0.63 12.71 16 11 O -0.53 -15.01 8.48 -3.06 -0.03 -15.03 16 12 N -0.63 -17.03 5.45 -307.52 -1.68 -18.71 16 13 C 0.27 10.26 8.11 133.32 1.08 11.34 16 14 C -0.29 -10.74 9.61 22.11 0.21 -10.52 16 15 C 0.05 1.98 11.44 83.52 0.96 2.93 16 16 N -0.34 -16.11 3.67 -351.83 -1.29 -17.41 16 17 C 0.26 13.35 5.57 85.64 0.48 13.83 16 18 C -0.62 -35.34 9.24 25.60 0.24 -35.10 16 19 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 20 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 21 N -0.92 -53.96 13.65 21.45 0.29 -53.67 16 22 Si 1.12 49.57 29.90 68.60 2.05 51.62 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 N -0.35 -16.06 12.42 -54.45 -0.68 -16.74 16 27 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.07 1.57 5.51 -2.38 -0.01 1.55 16 33 H 0.06 1.08 7.68 -2.38 -0.02 1.06 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 1.05 7.68 -2.38 -0.02 1.03 16 37 H 0.07 1.54 5.51 -2.39 -0.01 1.53 16 38 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.42 9.08 8.82 -92.71 -0.82 8.27 16 41 H 0.17 6.04 5.92 -2.91 -0.02 6.02 16 42 H 0.20 6.07 8.06 -2.91 -0.02 6.04 16 43 H 0.05 2.59 7.94 -2.39 -0.02 2.57 16 44 H 0.02 0.84 8.00 -2.39 -0.02 0.83 16 45 H 0.26 15.07 7.22 -92.71 -0.67 14.40 16 Total: -1.00 -76.54 374.89 5.83 -70.70 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.29 Total: 20.24 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 6.95 Total: -2.98 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.35 Total: -106.52 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.11 Total: -33.07 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Total: -76.54 5.83 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417648024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.712 kcal (2) G-P(sol) polarization free energy of solvation -76.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds