Wall clock time and date at job start Tue Mar 31 2020 13:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35731 * 116.99999 * 2 1 4 4 C 1.41856 * 126.79168 * 180.27959 * 3 2 1 5 5 C 1.36658 * 103.81391 * 180.13907 * 4 3 2 6 6 C 1.47548 * 126.87668 * 179.87846 * 5 4 3 7 7 O 1.21572 * 119.99970 * 354.21192 * 6 5 4 8 8 N 1.34775 * 119.99781 * 174.48553 * 6 5 4 9 9 C 1.46925 * 120.62973 * 183.67897 * 8 6 5 10 10 C 1.53634 * 108.54154 * 126.36913 * 9 8 6 11 11 C 1.53033 * 109.23946 * 54.85538 * 10 9 8 12 12 C 1.53009 * 109.44725 * 178.49880 * 11 10 9 13 13 N 1.46505 * 109.46741 * 295.06232 * 12 11 10 14 14 C 1.46499 * 120.00246 * 89.99805 * 13 12 11 15 15 C 1.36936 * 119.99720 * 269.99865 * 13 12 11 16 16 H 1.08007 * 119.99768 * 139.50846 * 15 13 12 17 17 C 1.38813 * 120.00211 * 319.50387 * 15 13 12 18 18 N 1.31619 * 120.00018 * 160.32831 * 17 15 13 19 19 Si 1.86796 * 120.00020 * 340.33308 * 17 15 13 20 20 H 1.48501 * 109.47028 * 95.25245 * 19 17 15 21 21 H 1.48498 * 109.47345 * 215.25024 * 19 17 15 22 22 H 1.48498 * 109.47261 * 335.25504 * 19 17 15 23 23 C 1.53039 * 109.54290 * 298.50829 * 11 10 9 24 24 C 1.46924 * 120.63187 * 3.95743 * 8 6 5 25 25 O 1.34654 * 106.24195 * 359.61158 * 5 4 3 26 26 N 1.20877 * 111.63371 * 0.26811 * 25 5 4 27 27 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47701 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47437 * 60.00018 * 1 2 3 30 30 H 1.08000 * 128.09110 * 0.04814 * 4 3 2 31 31 H 1.08997 * 109.58852 * 246.19880 * 9 8 6 32 32 H 1.08994 * 109.58402 * 6.62801 * 9 8 6 33 33 H 1.08996 * 109.63081 * 294.86201 * 10 9 8 34 34 H 1.08994 * 109.42877 * 174.72432 * 10 9 8 35 35 H 1.09005 * 109.46360 * 58.53454 * 11 10 9 36 36 H 1.08999 * 109.47042 * 55.05597 * 12 11 10 37 37 H 1.08999 * 109.47471 * 175.06691 * 12 11 10 38 38 H 1.09000 * 109.46696 * 92.93955 * 14 13 12 39 39 H 1.09000 * 109.47394 * 212.94152 * 14 13 12 40 40 H 1.09005 * 109.47077 * 332.94492 * 14 13 12 41 41 H 0.96993 * 120.00135 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.49477 * 301.41912 * 23 11 10 43 43 H 1.08994 * 109.52492 * 181.33595 * 23 11 10 44 44 H 1.09006 * 109.58916 * 353.37618 * 24 8 6 45 45 H 1.08999 * 109.59026 * 113.65551 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0055 5 6 3.5389 2.8138 0.0003 6 6 4.7784 3.6143 0.0006 7 8 5.8575 3.0636 0.1014 8 7 4.7138 4.9563 -0.1054 9 6 5.9407 5.7606 -0.1875 10 6 5.8564 6.6544 -1.4342 11 6 4.5679 7.4781 -1.3780 12 6 4.4973 8.3975 -2.5990 13 7 5.5870 9.3749 -2.5378 14 6 6.8819 9.0675 -3.1500 15 6 5.3950 10.5758 -1.9084 16 1 6.1772 10.9933 -1.2916 17 6 4.1952 11.2565 -2.0631 18 7 3.8451 12.1793 -1.1923 19 14 3.0774 10.8629 -3.5070 20 1 2.0495 9.8785 -3.0833 21 1 2.4107 12.1063 -3.9703 22 1 3.8834 10.2909 -4.6154 23 6 3.3596 6.5389 -1.3766 24 6 3.4155 5.6434 -0.1350 25 8 2.2757 3.2802 -0.0003 26 7 1.4684 2.3805 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.2441 0.7263 -0.0113 31 1 6.0316 6.3805 0.7044 32 1 6.8051 5.1013 -0.2666 33 1 5.8527 6.0337 -2.3302 34 1 6.7157 7.3244 -1.4588 35 1 4.5610 8.0800 -0.4693 36 1 4.5931 7.8030 -3.5075 37 1 3.5407 8.9199 -2.6057 38 1 6.9014 9.4504 -4.1704 39 1 7.6779 9.5358 -2.5710 40 1 7.0299 7.9877 -3.1643 41 1 3.0066 12.6547 -1.3001 42 1 3.3794 5.9194 -2.2732 43 1 2.4416 7.1263 -1.3605 44 1 2.6132 4.9068 -0.1793 45 1 3.3035 6.2519 0.7623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753362752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:22 Heat of formation + Delta-G solvation = 37.619628 kcal Electronic energy + Delta-G solvation = -28125.924925 eV Core-core repulsion = 24149.328641 eV Total energy + Delta-G solvation = -3976.596284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.31128 -40.25833 -39.23328 -37.96028 -35.81822 -33.58881 -33.11096 -32.19554 -31.46192 -30.71117 -28.09447 -27.64042 -26.16941 -24.64947 -23.84848 -23.16564 -22.59769 -21.19510 -20.74654 -19.74760 -18.30043 -18.25182 -17.40434 -16.73602 -16.35062 -16.17513 -15.94562 -15.40519 -15.27398 -15.07754 -14.44771 -14.30559 -14.12070 -13.73447 -13.46040 -13.36989 -13.04494 -12.76486 -12.59859 -12.36332 -12.28736 -12.04893 -11.77784 -11.68494 -11.47069 -11.11337 -10.85050 -10.77086 -10.59014 -10.46514 -10.28505 -10.17580 -9.98350 -9.70989 -9.69214 -9.50853 -8.79091 -8.52572 -6.75851 -6.00817 -3.46350 0.46999 1.77900 2.23391 2.29403 2.74510 3.01471 3.27539 3.44616 3.50376 3.72941 4.19797 4.46649 4.50124 4.67548 4.74423 4.82524 4.91877 4.98828 5.07075 5.12318 5.22816 5.26970 5.31689 5.36329 5.48022 5.63430 5.73715 5.86942 5.99441 6.06237 6.11979 6.22307 6.27490 6.29589 6.39456 6.54358 6.55440 6.63947 6.71281 6.79514 6.99076 7.08965 7.62916 7.85246 8.06822 8.38242 8.98544 9.69427 10.12293 11.14788 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.003087 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.942110 B = 9068.516962 C = 9980.521481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.206 3.794 4 C -0.155 4.155 5 C -0.051 4.051 6 C 0.600 3.400 7 O -0.517 6.517 8 N -0.588 5.588 9 C 0.112 3.888 10 C -0.123 4.123 11 C -0.107 4.107 12 C 0.145 3.855 13 N -0.612 5.612 14 C 0.120 3.880 15 C -0.267 4.267 16 H 0.077 0.923 17 C 0.036 3.964 18 N -0.903 5.903 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.302 1.302 22 H -0.271 1.271 23 C -0.130 4.130 24 C 0.094 3.906 25 O 0.116 5.884 26 N -0.394 5.394 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.190 0.810 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.005 0.995 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -21.958 2.385 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.009 3.991 4 C -0.178 4.178 5 C -0.117 4.117 6 C 0.385 3.615 7 O -0.394 6.394 8 N -0.319 5.319 9 C -0.009 4.009 10 C -0.161 4.161 11 C -0.128 4.128 12 C 0.019 3.981 13 N -0.336 5.336 14 C -0.025 4.025 15 C -0.396 4.396 16 H 0.094 0.906 17 C -0.164 4.164 18 N -0.544 5.544 19 Si 0.712 3.288 20 H -0.213 1.213 21 H -0.230 1.230 22 H -0.195 1.195 23 C -0.169 4.169 24 C -0.029 4.029 25 O 0.054 5.946 26 N -0.121 5.121 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.207 0.793 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.715 -21.974 2.469 22.610 hybrid contribution -0.556 -0.440 -0.796 1.066 sum -5.271 -22.415 1.674 23.087 Atomic orbital electron populations 1.23108 0.76494 1.04283 1.02572 1.86216 1.22829 1.20408 1.89352 1.21860 0.90570 0.85818 1.00877 1.22161 0.94468 0.94852 1.06336 1.24112 0.87025 0.93815 1.06719 1.16611 0.85097 0.81740 0.78079 1.90858 1.26766 1.70896 1.50882 1.48130 1.09391 1.04722 1.69702 1.21971 0.85627 0.93643 0.99675 1.22095 1.00286 0.97558 0.96133 1.21778 0.92340 0.95682 1.03002 1.21171 0.92653 0.90304 0.93976 1.44022 1.09482 1.15168 1.64916 1.21200 0.88528 0.97195 0.95579 1.18768 1.02431 0.95599 1.22812 0.90558 1.25536 0.98179 0.95653 0.97067 1.69842 1.23138 1.26963 1.34457 0.86856 0.80420 0.76219 0.85311 1.21309 1.23034 1.19549 1.21963 1.00307 0.97803 0.96779 1.22347 0.83577 0.96786 1.00162 1.85101 1.12052 1.28655 1.68785 1.73989 1.16784 0.96870 1.24443 0.87479 0.92057 0.92051 0.79293 0.90528 0.89042 0.92362 0.89222 0.89822 0.94542 0.92894 0.97654 0.94186 0.94675 0.92727 0.91874 0.90292 0.88425 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.73 101.05 1.08 1.29 16 2 O -0.28 -2.81 10.57 -18.90 -0.20 -3.01 16 3 C 0.21 2.32 8.00 -16.72 -0.13 2.19 16 4 C -0.16 -1.69 10.97 -38.77 -0.43 -2.11 16 5 C -0.05 -0.61 6.99 -36.36 -0.25 -0.86 16 6 C 0.60 7.95 7.69 -12.46 -0.10 7.85 16 7 O -0.52 -7.98 16.34 5.30 0.09 -7.89 16 8 N -0.59 -7.49 2.97 -173.73 -0.52 -8.01 16 9 C 0.11 1.45 6.45 -3.48 -0.02 1.42 16 10 C -0.12 -1.76 4.42 -26.38 -0.12 -1.87 16 11 C -0.11 -1.76 2.36 -90.58 -0.21 -1.98 16 12 C 0.14 2.90 3.96 -4.03 -0.02 2.89 16 13 N -0.61 -13.82 2.26 -181.11 -0.41 -14.23 16 14 C 0.12 2.29 9.66 59.85 0.58 2.87 16 15 C -0.27 -7.21 9.92 -15.06 -0.15 -7.35 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 17 C 0.04 1.01 5.33 -17.43 -0.09 0.92 16 18 N -0.90 -26.89 13.97 55.49 0.78 -26.11 16 19 Si 0.88 21.79 25.00 -169.99 -4.25 17.54 16 20 H -0.29 -6.73 6.71 56.52 0.38 -6.35 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.13 -1.78 5.36 -26.61 -0.14 -1.92 16 24 C 0.09 1.12 6.33 -3.71 -0.02 1.10 16 25 O 0.12 1.37 7.73 15.52 0.12 1.49 16 26 N -0.39 -4.72 11.50 30.47 0.35 -4.37 16 27 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.18 7.03 -51.93 -0.36 0.81 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.37 5.83 -51.93 -0.30 1.06 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 37 H 0.05 1.18 3.45 -51.93 -0.18 1.00 16 38 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 40 H 0.03 0.56 6.09 -51.93 -0.32 0.25 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.09 3.81 -54.81 -0.21 0.88 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -31.38 357.61 -5.12 -36.50 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.44 Total: -1.73 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.02 Total: 4.42 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.20 Total: -52.72 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.01 Total: -9.41 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.25 Total: 17.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.38 -5.12 -36.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753362752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.119 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds